Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco11g0351 | ATGGAACCTGCCGATTCCACCAATGGCGATGAAGAATCCATTATTACTCCCTTGCTTGCTCAGAAATCATTTGCCATTTCTTCCTCACAGGTCGCTATTGTTGGGGCTAATGTCTGCCCCATTGAGAGCCTTGACTACGAGATTTTTGATAATGAGTTCTTCATGCAAGATTGGAGGAGTCGTGAGGATTTCCAGATATTTCAATACTTGGTTATGAAGTGGCTTTCATGCTTCTTGATCGGTTTGATTATGGGTCTTGTTGGATTTTTCAACAACCTGGCGGTGGAGAATATTGCAGGGAAGAAGTTTGTGGTCACTTCGAATATGATGCTTGAGGGCAGGTATGGGATGGCTTTTCTTGTTTTCTCTGTTTCCAATTTAGTTCTCACCCTATTCGCATCTGTCATTACGGCATTGATCTGTCCCCAAGCAGCCGGCTCAGGTATACCAGAAGTAAAGGCTTATCTGAATGGCGTGGATGCACCTGGAATATTATCGCCTCGAACACTGTTAGTGAAGATTGTTGGCAGCATTTCTATTGTGTCATCATCTATGATCGTCGGAAAAGCTGGGCCTATGGTACATACAGGGGCATGTGTTGCATCCTTGGTAGGTCAGGGGGGTTTCAAAATATTTGGCTTGACATGGAGATGGCTATACCATCTCAAGAATGATCGAGATAGGCGGGATCTTGTAACATGTGGAGCCGCTGCTGGAATAGCTGCTGCTTTTCGTGCTCCTGTTGGTGGTGTGTTGTTTGCTTTTGAAGAGATGGCATCTTGGTGGAGAAGTGCCCTTCTGTGGCGATCATTTTTCACAACGGCTGTAGTTGCTGTGGTCTTACGCTCACTGATTGACCTTTGCTTAAATGGATTATGTGGATTATTTGGTAAAGGGGGACTTATAATATTTGATACCTACTCAGACTCCCCCACATATCACCTCGAAGATCTACCTCCGGTGCTTGTTCTTGCTTTTATTGGAGGCATACTTGGAAGCTTATATAATTTTCTTTTGAACAAGTTTCTTCGCATTTACAATCTCATACACGAGAAAGGTATTATTTACAAAATTTTACTGGCTTGCTCGGTCTCAATTTTCACATCTTTCCTTCTTTTTGGATTACCATGGTTCGCATCATGCCAACCTTGCCCATCAAGTGCTCGAGAAATTTGTCCTACGATAGGTCGATCTGGTAACTTCAAGAAGTTTCAGTGTGCTCCTGGTCACTACAATGATCTTGCAAGTCTCATATTTAACACCAATGATGATGCCATAAAAAATCTCTTTAGCAAGGGCACGGACTCTGAGTTTCAGTTATCGTCAATGCTTACATTTTTCGTTGCCTGTTTTTCCTTGAGTATTCTCAGTTATGGGACAGTTGCTCCTGTTGGCCTGTTTGTCCCTGTTATTGTGACTGGAGCTTCTTATGGTCGTTTCGTTGGAATGGTTGTCGGTCCGTACACAAACCTCAGCCATGGCTTCTTTGCGATATTAGGCGCTGCTTCATTTCTCGGGGGGTCCATGAGGACAACAGTGTCTCTCTGTGTTATTATGCTTGAATTGACCAATAATTTGTTGTTGTTGCCTTTAATAATGTTGGTTCTCCTTATTTCCAAGACTGTAGCTGATGCTTTCAACAGTAATATATATAACTTGATCATGAAAGCGAAAGGATTTCCTTATCTAGAAGGCCATGTTGAGCCATACATGAGGCAGCTCACTGTTGCTGATGTGTTAACGAGTCCGCTTCAATTATTGCATGGCATTGAGAAGGTTCGTAACGTAATAAACATTCTCAGAATGACGAGCCATCACGGATTTCCTGTCATTGACGAACCTCCTTTCTCCGAAGTCCCTGTTTTATATGGTCTAATTCTCAGAGCCCATCTTATCATGTTGTTAAAGAAGAAAGCTTTCTTGTCCGTGCCAATACGTGGATCAGAAAGAGATCTCTGTAAGCTATTCTCAGCTGATGATTTTGTAAAGATGGGTTCGGGTGACGTTGAAAGGATTGAAGATGTACAATTGACCGATGAAGAGATGGAGATGTTCATTGATCTACATCCGTTTGCCAATACTTCACCTTGTACCGTCTTGGAGACAATGTCACTCGCAAAGGCTCTCGAAATTTTTCGAGAAACTGGTTTAAGACACATGCTGGTGATACCCAAGGTCCCTGGGAGATCGCCCGTGGTTGGTGTATTGACTCGGCACGACTTCATGCCAGATTACATTCTTAGTTTGCATCCATTGCTAGAGAAGAGCAGATGGAAAAGCAGTATCAGACATATAGAAAAGTCTCTCTTAGGGAAAATACATGAACATATGACTGCTAAAGGTGGACCAATCTGGCCAATATTTACCAAGAATGATGAAAATGTGATAAGAGTTGTGGCATGGTAG | 2406 | 42.68 | MEPADSTNGDEESIITPLLAQKSFAISSSQVAIVGANVCPIESLDYEIFDNEFFMQDWRSREDFQIFQYLVMKWLSCFLIGLIMGLVGFFNNLAVENIAGKKFVVTSNMMLEGRYGMAFLVFSVSNLVLTLFASVITALICPQAAGSGIPEVKAYLNGVDAPGILSPRTLLVKIVGSISIVSSSMIVGKAGPMVHTGACVASLVGQGGFKIFGLTWRWLYHLKNDRDRRDLVTCGAAAGIAAAFRAPVGGVLFAFEEMASWWRSALLWRSFFTTAVVAVVLRSLIDLCLNGLCGLFGKGGLIIFDTYSDSPTYHLEDLPPVLVLAFIGGILGSLYNFLLNKFLRIYNLIHEKGIIYKILLACSVSIFTSFLLFGLPWFASCQPCPSSAREICPTIGRSGNFKKFQCAPGHYNDLASLIFNTNDDAIKNLFSKGTDSEFQLSSMLTFFVACFSLSILSYGTVAPVGLFVPVIVTGASYGRFVGMVVGPYTNLSHGFFAILGAASFLGGSMRTTVSLCVIMLELTNNLLLLPLIMLVLLISKTVADAFNSNIYNLIMKAKGFPYLEGHVEPYMRQLTVADVLTSPLQLLHGIEKVRNVINILRMTSHHGFPVIDEPPFSEVPVLYGLILRAHLIMLLKKKAFLSVPIRGSERDLCKLFSADDFVKMGSGDVERIEDVQLTDEEMEMFIDLHPFANTSPCTVLETMSLAKALEIFRETGLRHMLVIPKVPGRSPVVGVLTRHDFMPDYILSLHPLLEKSRWKSSIRHIEKSLLGKIHEHMTAKGGPIWPIFTKNDENVIRVVAW | 801 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 3589858 | 3594801 | - | CcPI632755_11g003510.1 | Cco11g0351 | 191587 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco11g0351 | 801 | CDD | CBS_pair_voltage-gated_CLC_euk_bac | 575 | 744 | - | - | |
| Cco11g0351 | 801 | SMART | cbs_1 | 695 | 748 | IPR000644 | - | |
| Cco11g0351 | 801 | SMART | cbs_1 | 583 | 636 | IPR000644 | - | |
| Cco11g0351 | 801 | Gene3D | - | 564 | 744 | IPR046342 | - | |
| Cco11g0351 | 801 | PANTHER | CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER | 27 | 748 | IPR051280 | GO:0009705(PANTHER)|GO:0015108(PANTHER)|GO:0043231(PANTHER) | |
| Cco11g0351 | 801 | Gene3D | Clc chloride channel | 65 | 563 | - | - | |
| Cco11g0351 | 801 | ProSiteProfiles | CBS domain profile. | 692 | 752 | IPR000644 | - | |
| Cco11g0351 | 801 | SUPERFAMILY | CBS-domain pair | 566 | 742 | IPR046342 | - | |
| Cco11g0351 | 801 | SUPERFAMILY | Clc chloride channel | 51 | 565 | IPR014743 | - | |
| Cco11g0351 | 801 | PRINTS | Chloride channel signature | 550 | 564 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cco11g0351 | 801 | PRINTS | Chloride channel signature | 462 | 482 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cco11g0351 | 801 | PRINTS | Chloride channel signature | 142 | 159 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cco11g0351 | 801 | PRINTS | Chloride channel signature | 512 | 531 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cco11g0351 | 801 | PRINTS | Chloride channel signature | 237 | 256 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cco11g0351 | 801 | PRINTS | Chloride channel signature | 494 | 510 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cco11g0351 | 801 | PRINTS | Chloride channel signature | 173 | 192 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cco11g0351 | 801 | Pfam | Voltage gated chloride channel | 130 | 544 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cco11g0351 | 801 | PRINTS | Plant CLC chloride channel signature | 414 | 430 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Cco11g0351 | 801 | PRINTS | Plant CLC chloride channel signature | 258 | 266 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Cco11g0351 | 801 | PRINTS | Plant CLC chloride channel signature | 272 | 282 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Cco11g0351 | 801 | PRINTS | Plant CLC chloride channel signature | 47 | 55 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Cco11g0351 | 801 | PRINTS | Plant CLC chloride channel signature | 290 | 297 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Cco11g0351 | 801 | FunFam | Chloride channel ClC3 | 65 | 384 | - | - | |
| Cco11g0351 | 801 | Pfam | CBS domain | 694 | 742 | IPR000644 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco10g0698 | Cco-Chr10:9695242 | Cco11g0351 | Cco-Chr11:3589858 | 1.20E-262 | dispersed | |
| Cco11g0351 | Cco-Chr11:3589858 | Cco11g0721 | Cco-Chr11:7968440 | 7.50E-220 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco11g0351 | K05016 | - | csv:101216071 | 1380.93 |