Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g0371 ATGACTGTGGAGGTTGGAAGGGCTAATTTGGTGGGTGAAAATGAGGATATGGATCAATTTCCTATTGGTATGCGTATTCTTGCTGTGGATGATGACCCCATTTGCCTTAAGGTTTTGGAGAATTTGCTTCGTAAATGCCAATATCATGTTACAACAACCAATCAGGCGGTTCAGGCACTTAAAATGTTGAGGGAGAACAAAAACAGGTTTGACCTGGTTATCAGCGATGTTAACATGCCAGACATGGATGGTTTTAAGCTCCTTGAGCTAGTAGGCCTTGAAATGGACCTACCTGTTATCATGTTGTCTGCTCATAGCAATACCGAACTTGTAAAGAAGGGAGTTATTCATGGGGCGTGTGACTATTTGCTGAAACCTGTTCGAATTGAAGAATTGAAGAATATATGGCAACATGTCCTTCGGAGAAAGAAGCCTTCTGCTAAGAACCAAAATAAGCGCACTAATGGAAATAACACGAGTCAAAGTGTTGAAGGTGCAAAATGTTTTCCACCTGCAATCAGTACTGATAATGAGAAACCTGGTAAAAGGCAAAAAGACCAGGACGACGACGAGGAAGGAGGTGAAGAAGACAGTACTTATGAGAATGATGACTCCTCAACCCAAAAAAAGCCAAGGGTAAATTGGTATGACGGAGATGAAAATTTGCACAGGAAGTTTGTGGCAGCTGTTAACTTTTTGGGCTATGAAAAGGCTGTTCCTAAGAAGATACTTGATCTGATGAATGTTGAAGGACTTACAAGAGAAAATGTGGCCAGCCATCTTCAGAAATACAGACAATACCTTAAAAAACTGTGTAGTGAGGAAGCTCAGCAATGTAACATGATGGGTGCATTTGGAGGTAAACAAACCTCCTTCAGGCCCATGGCTTCACTCAATGGATTTTCAATGACTGGAATAGGAAGGCTCTCAAATGCTACATTCTTGCCGTATCCCTCTCGAGAAATAGTTGGTCAATTAAACTCTACTTCTGGATTGAGTTTACATGGAATTGCTTCCTCTGGAATGTTCCAGTCCCATAAATGGAGTAGCTCATTAAATACTGTTGGAAAATCCCATCCAGCTTTCTTGCTTGCCAACCAACCTACGCACACATTCAATGGTATTTCAACATCATCGGATCACATCCAGTTGCATCGGGATAAATGCACTCTGTCATTCAAAGAGTCTAATTCGATAAATGATGCCTCAAGTTTTACAGTTTCCACCAGCTTCCCTGATGCTAGAATGGCTGTTGGTAGCTCAAGCAATTATGATTTCGGTTCGAGCCATTTGTTGATGTTACAAGGACAGAAGCAACAGATTCAAGGTGGTGGAGAATTTGGAGGTCAGTCTTCTCTTAAGGTAACTCTAGACAACCCAGAACCATTAGCAAACGGCACAGTTGTTTCTAATATTTTGGGCCATGGTGAGTCTAACAAAAACTGGCCAGGATCAATCCAGCTGCCCAAGTTTTCATCTAATGTCTCAGTCACTGGAATTTACCCTCCTGCTGGAATGCCTGCTACTTATTTGACAATTTCCTCGGCTCAGCCTGATAACGACAACTTTCCTGTTGGTTTTCCTTCAACAAGTGTGGATTCAAGTTCTCAGCTTGATTTAAGAGGGGACACAAAATGCTATGAAGAACTAATTGGTAGTGTTGTTGAAGCCATGAATGGAAGATCAAAACAACAATGGGATGCAGCTAAACAGGATTATTATGGCAACCATAGTTCCATTGTGAGAGACTCTCTAGTTTCTGGGAATAGTGTTGTAGATCCCTTGAACCAGATTGCAAATCAGAACAATGCAATCTGTCTAGAAAACATTGGAAGCTCTTCGACTAACCAATTGAATGATGGTGCTCCAACCTTCATTCACAATGGTGCGGAAATATCTGCAATGGACACTTGGATGAACTACGATGGAAAAATTCTCATGGATCAAACAAAGCTACAAAGTGGATTTGCAAATTCTAGTTTTAATTCCTTGGATGAATTGGTTAATGCTCTGTCAAAACAGGATCAAGATCAATCCATTCAAATAAATGACGAATTTGGATTTGATGCCCAATCTCTCGGGTCGTCGTGTATATGA 2097 41.01 MTVEVGRANLVGENEDMDQFPIGMRILAVDDDPICLKVLENLLRKCQYHVTTTNQAVQALKMLRENKNRFDLVISDVNMPDMDGFKLLELVGLEMDLPVIMLSAHSNTELVKKGVIHGACDYLLKPVRIEELKNIWQHVLRRKKPSAKNQNKRTNGNNTSQSVEGAKCFPPAISTDNEKPGKRQKDQDDDEEGGEEDSTYENDDSSTQKKPRVNWYDGDENLHRKFVAAVNFLGYEKAVPKKILDLMNVEGLTRENVASHLQKYRQYLKKLCSEEAQQCNMMGAFGGKQTSFRPMASLNGFSMTGIGRLSNATFLPYPSREIVGQLNSTSGLSLHGIASSGMFQSHKWSSSLNTVGKSHPAFLLANQPTHTFNGISTSSDHIQLHRDKCTLSFKESNSINDASSFTVSTSFPDARMAVGSSSNYDFGSSHLLMLQGQKQQIQGGGEFGGQSSLKVTLDNPEPLANGTVVSNILGHGESNKNWPGSIQLPKFSSNVSVTGIYPPAGMPATYLTISSAQPDNDNFPVGFPSTSVDSSSQLDLRGDTKCYEELIGSVVEAMNGRSKQQWDAAKQDYYGNHSSIVRDSLVSGNSVVDPLNQIANQNNAICLENIGSSSTNQLNDGAPTFIHNGAEISAMDTWMNYDGKILMDQTKLQSGFANSSFNSLDELVNALSKQDQDQSIQINDEFGFDAQSLGSSCI 698
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3717960 3721974 - CcPI632755_11g003710.1 Cco11g0371 191607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g0371 698 SUPERFAMILY Homeodomain-like 208 270 IPR009057 -
Cco11g0371 698 CDD REC_typeB_ARR-like 26 140 - -
Cco11g0371 698 MobiDBLite consensus disorder prediction 150 165 - -
Cco11g0371 698 PIRSF RR_ARR_type-B 6 698 IPR017053 GO:0003677(InterPro)|GO:0003700(InterPro)|GO:0009736(InterPro)
Cco11g0371 698 FunFam Two-component response regulator 206 272 - -
Cco11g0371 698 SUPERFAMILY CheY-like 23 151 IPR011006 -
Cco11g0371 698 NCBIfam myb-like DNA-binding domain, SHAQKYF class 210 266 IPR006447 GO:0003677(InterPro)
Cco11g0371 698 ProSiteProfiles Response regulatory domain profile. 25 140 IPR001789 GO:0000160(InterPro)
Cco11g0371 698 SMART REC_2 24 136 IPR001789 GO:0000160(InterPro)
Cco11g0371 698 Gene3D - 24 178 - -
Cco11g0371 698 Gene3D - 206 272 - -
Cco11g0371 698 PANTHER TWO-COMPONENT RESPONSE REGULATOR 19 350 IPR045279 GO:0009736(InterPro)
Cco11g0371 698 MobiDBLite consensus disorder prediction 141 215 - -
Cco11g0371 698 Pfam Response regulator receiver domain 26 134 IPR001789 GO:0000160(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1069 Cco-Chr4:26178465 Cco11g0371 Cco-Chr11:3717960 1.10E-16 dispersed
Cco05g1878 Cco-Chr5:27815117 Cco11g0371 Cco-Chr11:3717960 1.60E-106 dispersed
Cco06g1521 Cco-Chr6:25706929 Cco11g0371 Cco-Chr11:3717960 2.60E-45 dispersed
Cco06g1523 Cco-Chr6:25725651 Cco11g0371 Cco-Chr11:3717960 1.40E-38 dispersed
Cco08g1918 Cco-Chr8:30151572 Cco11g0371 Cco-Chr11:3717960 2.90E-64 dispersed
Cco09g0531 Cco-Chr9:4642800 Cco11g0371 Cco-Chr11:3717960 6.20E-18 dispersed
Cco09g1279 Cco-Chr9:13921233 Cco11g0371 Cco-Chr11:3717960 5.90E-21 dispersed
Cco10g0198 Cco-Chr10:2000341 Cco11g0371 Cco-Chr11:3717960 7.10E-18 dispersed
Cco10g1632 Cco-Chr10:29685087 Cco11g0371 Cco-Chr11:3717960 2.70E-15 dispersed
Cco11g0371 Cco-Chr11:3717960 Cco06g1405 Cco-Chr6:24515754 1.10E-153 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60234 PF00072 Response_reg 1.60E-25 CL0304 Cco TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g0371 K14491 - csv:101203718 1184.86