Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g0378 ATGGTTAGCAATTTCTCTTATAGAAAAGCCTTCATCGACTCCACAATCAAAATTGCAAGATCTTATGGGTTTGATGGGCTTGATTTTTGTTGGGTTTCAGCCAATTCAAGTTCTGACATGTCAAACATGGGGAAACTCTTTCAAGAATGGAGACAAGCTGCAGAAGTAGAAGCAAGAAGCTCAAAAAAACAAGTATTGATTTTGACATCAGCAGTTCAATACAAGCCAGATTTGGAAAATGGGTCATCTTTTCCAGTGGATTCCATAAGGAATAATTTGAATTGGGTAAATATTTTGGCTTATGATTATTACATGCCAAATTGGGCAAATTTTACAGCTCCTTTTGCAGCTTTATACGATACAAAATTAGGAGCAAATACAGATAGTGGAATTGGGAAATGGATTGAAAAAGGATTACCAGCTGCTAATATTCTTTTGGCTTTACCATTTTATGGATATGCTTGGAGGCTTAAAAATGTTGAGAATTTTGGTGTTGGGGCAGCAGCAATTGGGGCAGCAATTACTAATGATGGGTCAATTAGTTATAAGAATATAAAGGAATTTATGGAGAGAAATGGGGTTGATGAAGTGAAGTTTAATGGAAGTTATGTGATGAGTTATTGTGTGGTTGGATCTACTTGGATTGCTTTTGATGATGCTGAGGTTGTTAAAATTAAGGTTTCTTATGTTAAACAAAGGAGGTTGCTTGGTTACTTTGTTTGGTTGGTGTCTTATGATGACAATTGGGAGCTCTCTTCTGTTGCAGCAAGAGAGTTTGGCAATGAGAAAGAGAAGAAGGTATCATTGCTGATAATCATCCCAAGTACAATTGGTGCAGCCATATTATTACTACTACTAGGATTTTTGTTGTTTAGAAGACTCAAATCCAAAGGAAGAAGATCAAAATTCAATGTAAACAATCTTGTTGGTGGAGAAGATTTTGGTAGCAATGCACCTGATTTGCAAGTTTTTAGCTTTGATGAGATTGAAAAGGCTACCAATAAGTTTGCTTTCATGAATAAACTTGGACAAGGTGGTTATGGTCCTGTTTATAAGGGTATACTACCAAATGGTAAGGAGATAGCAGTGAAAAGATTGTCAGAAACTTCAGGACAGGGTTTTGAGGAGTTTAAGAATGAAGTTTTGCTGACTGCAAGATTACAACATGTCAATCTTGTGAGAGTTCTTGGATTTTGTGTTGACACTCATCAACATATATTGGTTTATGAGTACATGCCTAACAAAAGCTTGGACTTCCACCTATTTGGCCCTGGAAGAGGAAATTTGTTGAATTGGGCAAAAAGAGTGGAGATCATTGAAGGGGTAACTCAAGGACTTCTTTACCTACAAGAATACTCAAGATTGACAATAATTCATAGGGATTTGAAGCCTAGCAATATTTTGTTGGATGATGGAATGAAACCGAAAATCTCGGATTTTGGCATGGCTAGAATTTTTGCAAAAGATGAACTTGAAGCAAACACAAGTCGGATTGCGGGAACACATGGTTATATACCTCCTGAGTATGTGAGAAAAGGACTATATTCTACGAAATCAGATGTATTTAGCTTCGGAGTTCTTCTTCTTCAAATCATAAGTGGCAAGAAGATTACCAAGTTGTATGGAGTGCATGAACATTTGAACCTTCTAGATTATGCATATGAGCTGTGGAAAGATGGCAAAGGGATGGAGTTTATGGATTCATCACTTGATGATTCTGATTCAACTTGCAAACTCACAAGATGCATGCAAATAGCTTTGCTTTGTGTCCAAGAAAATGCAGATGATAGGCCATCCATGTTGGAAATCTCTTCAATGCTTAAAAATACAACTTCAGATATTAAAGCTCCACAAAGACCTGCTTTCTCTACAAAAGAAATTCAACATGAAACTGATGATCATACCTTTACCATTCAACAAGAAACTTACTCAATTTGTACTCCAACAGTTTCCGAATTTGCAGCTCGATGA 1971 36.58 MVSNFSYRKAFIDSTIKIARSYGFDGLDFCWVSANSSSDMSNMGKLFQEWRQAAEVEARSSKKQVLILTSAVQYKPDLENGSSFPVDSIRNNLNWVNILAYDYYMPNWANFTAPFAALYDTKLGANTDSGIGKWIEKGLPAANILLALPFYGYAWRLKNVENFGVGAAAIGAAITNDGSISYKNIKEFMERNGVDEVKFNGSYVMSYCVVGSTWIAFDDAEVVKIKVSYVKQRRLLGYFVWLVSYDDNWELSSVAAREFGNEKEKKVSLLIIIPSTIGAAILLLLLGFLLFRRLKSKGRRSKFNVNNLVGGEDFGSNAPDLQVFSFDEIEKATNKFAFMNKLGQGGYGPVYKGILPNGKEIAVKRLSETSGQGFEEFKNEVLLTARLQHVNLVRVLGFCVDTHQHILVYEYMPNKSLDFHLFGPGRGNLLNWAKRVEIIEGVTQGLLYLQEYSRLTIIHRDLKPSNILLDDGMKPKISDFGMARIFAKDELEANTSRIAGTHGYIPPEYVRKGLYSTKSDVFSFGVLLLQIISGKKITKLYGVHEHLNLLDYAYELWKDGKGMEFMDSSLDDSDSTCKLTRCMQIALLCVQENADDRPSMLEISSMLKNTTSDIKAPQRPAFSTKEIQHETDDHTFTIQQETYSICTPTVSEFAAR 656
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3775201 3781623 + CcPI632755_11g003780.1 Cco11g0378 191614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g0378 656 SMART serkin_6 336 607 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco11g0378 656 Gene3D Glycosidases 1 261 - -
Cco11g0378 656 SUPERFAMILY (Trans)glycosidases 1 262 IPR017853 -
Cco11g0378 656 FunFam Uncharacterized protein 312 411 - -
Cco11g0378 656 ProSitePatterns Serine/Threonine protein kinases active-site signature. 457 469 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco11g0378 656 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 1 262 IPR001223 GO:0005975(InterPro)
Cco11g0378 656 CDD STKc_IRAK 342 609 - -
Cco11g0378 656 Pfam Protein kinase domain 338 603 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco11g0378 656 Gene3D Transferase(Phosphotransferase) domain 1 412 632 - -
Cco11g0378 656 FunFam Uncharacterized protein 412 616 - -
Cco11g0378 656 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 226 622 - GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Cco11g0378 656 FunFam Class V chitinase CHIT5b 150 217 - -
Cco11g0378 656 Gene3D Phosphorylase Kinase; domain 1 301 411 - -
Cco11g0378 656 ProSiteProfiles Protein kinase domain profile. 336 622 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco11g0378 656 SUPERFAMILY Protein kinase-like (PK-like) 319 632 IPR011009 -
Cco11g0378 656 Pfam Glycosyl hydrolases family 18 1 246 IPR001223 GO:0005975(InterPro)
Cco11g0378 656 Gene3D - 154 217 IPR029070 -
Cco11g0378 656 SUPERFAMILY Chitinase insertion domain 151 217 IPR029070 -
Cco11g0378 656 SMART 2g34 1 246 IPR011583 GO:0008061(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco11g0376 Cco-Chr11:3757424 Cco11g0378 Cco-Chr11:3775201 1.30E-37 dispersed
Cco11g0378 Cco-Chr11:3775201 Cco09g0207 Cco-Chr9:1841038 1.80E-99 dispersed
Cco11g0377 Cco-Chr11:3763994 Cco11g0378 Cco-Chr11:3775201 1.50E-42 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87220 PF00069 Pkinase 5.70E-43 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g0378 - - - 0.0