Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco11g0379 | ATGGCTGATATTTCATTGGAAGATGTTAGAAATGAGAATGTTGACCTGGAGAGGATTCCAATTGAGGAGGTATTTGAGCAACTGAAATGCAACAGAAATGGTTTGTCATCTGAGGAAGGAGAAAAGAGACTTCAAATCTTTGGCCCTAACAAACTTGAAGAGAAAAAAGAGAGCAAATTCCGCAAGTTTTTGGGGTTCATGTGGAATCCCCTCTCATGGGTCATGGAATCTGCTGCTATCATGGCTATTGTCTTGGCCAATGGAGGGGGAAAGCCTCCGGACTGGCAAGATTTTGTTGGAATAGTGGTGTTGCTCATTATCAACTCTACCATCAGTTTTATTGAAGAGAACAATGCAGGTAATGCAGCTGCTGCTCTAATGGCAGGACTTGCTCCAAAAACCAAGAACCCGGGCGACGAGGTTTTCTCTGGCTCGACTTGTAAACAAGGAGAAATTGAGGCTATTGTTATTGCCACTGGTGTCCACGCCTTCTTTGGCAAGGCAGCTCATCTTGTTGATAGCACTAACCAAGTTGGTCATTTCCAAAAGGTGTTGACAGCCATTGGTAACTTCTGCATTTGCTCCATTGCTCTAGGAATGCTCATTGAAATCAAAGTGATGTACCCAATCCAAAATAGGGCATACAGAGAGGGCATTGATAACTTGCTGGTTCTTCTCATCGGTGGCATTCCAATTGCCATGCCGACAGTGTTGTCGGTGACCATGGCTATTGGTTCTCACCGTCTAGCAGAGCAAGGTGCTATTACCGAAAGAATGACAGCCATTGAAGAAATGGCAGGAATGGATGTGCTTTGTAGTGACAAGACTGGGACTCTCACCCTCAACAAGCTGACAGTGGACAAGAGTTTGATTGAAGCAAGAGCAGGGATCACTGAGGTACATTTCTTACCTTTCAATCCTGTTGAGAAGCGCACGGCTATCACTTACATTGATAGTAATGGAAACTGGCATAGAATTAGCAAGGGTGCTCCGGAACAGATAATTGACCTTTGTGACCTCAAAGGGGAGATAAGGAAGAAGGCTCATGATATTATCAGTAATTATGCAGATCGTGGTCTTCGTTCTCTAGTCATCGCTCATCAGACTGTTCTAGAGAAAACCAAAGAGAGTGCTGGAGAGCCATGGGACTTTGTGGGCTTGTTGCCCCTCTTTGATCCTCCAAGGCATGATAGTGCAGAGACTATTCGTCAAGCACTCGAACTCGGGGTAAATGTTAAGATGATCACTGGAGATCAATTGGCCATTGGAAAAGAGACCGGTGGTAGGCTCGGTATGGGCACCAATATGTATCCATCGTCTTCCTTGCTTGGTCAAAGCAAGGATGAATCCATTGCTAGCATTCCTGTTGATGAACTTATTGAGAAGGCAGATGGGTTTGCTGGTGTCTTCCCAGAACACAAGTATGAGATAGTGAAAAAGCTCCAAGAGAGGAAACACATTTGTGGGATGACTGGTGACGGTGTTAACGATGCCCCTGCGCTCAAGAAGGCCGACATCAGAATTTCTGTAGCTGATGCAACTGATGCAGCAAGGAGTGCATCAGACATTGTTTTAACAGAACCAGGTCTCAGTGTAATCGTGAGTGCAGTTCTAACAAGTAGGGCCATCTTTCAAAGGATGAAAAACTACACAATCTATGCAGTTTCCATCACAATCCGAATCGTGTTGGGTTTCTTGCTTGTAGCTCTGATATGGAAGTTTGACTTCTCACCTTTCATGGTCTTGATTATTGCCATCTTGAATGATGGAACCATCATGACCATCTCCAAGGATAGAGTGAAGCCATCTCCTATGCCTGATTCATGGAAGCTAAACGAAATTCACCGGTGTTGTTCTCGGAACAAAACATTTGGGGTGAAGCAAATCAGTGAAAATCTAGCTGAGCTTAACTCTGCTCTTTACCTCCAATTGGCAACCGTCATCGCCGTGTATGCCGAATGGGACTTTGCTAGAATTCATGGCATTGGTTGGGGATGGGCAGGAGTGATCTGGATTTACAGCATCATCACATACCTCCCCCTTGATGTCCTCAAGTTCATCATCCGCTATGCATTGAGTAGGAAGGCCTGGGATAATTTGCTTCAAAACAAGACTGCATTCACAACTAAGAAGGATTATGGAAAAGGAGAAAGGGAGACACAATGGGCATCAGCACAACGTACACTTCACGGCTTACAGAAACCAGAACCGCTATTTAACGACACGAGTAGCTACCGAGAGCTTTCCGAGATCGCAGAATAA | 2262 | 44.87 | MADISLEDVRNENVDLERIPIEEVFEQLKCNRNGLSSEEGEKRLQIFGPNKLEEKKESKFRKFLGFMWNPLSWVMESAAIMAIVLANGGGKPPDWQDFVGIVVLLIINSTISFIEENNAGNAAAALMAGLAPKTKNPGDEVFSGSTCKQGEIEAIVIATGVHAFFGKAAHLVDSTNQVGHFQKVLTAIGNFCICSIALGMLIEIKVMYPIQNRAYREGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLAEQGAITERMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKSLIEARAGITEVHFLPFNPVEKRTAITYIDSNGNWHRISKGAPEQIIDLCDLKGEIRKKAHDIISNYADRGLRSLVIAHQTVLEKTKESAGEPWDFVGLLPLFDPPRHDSAETIRQALELGVNVKMITGDQLAIGKETGGRLGMGTNMYPSSSLLGQSKDESIASIPVDELIEKADGFAGVFPEHKYEIVKKLQERKHICGMTGDGVNDAPALKKADIRISVADATDAARSASDIVLTEPGLSVIVSAVLTSRAIFQRMKNYTIYAVSITIRIVLGFLLVALIWKFDFSPFMVLIIAILNDGTIMTISKDRVKPSPMPDSWKLNEIHRCCSRNKTFGVKQISENLAELNSALYLQLATVIAVYAEWDFARIHGIGWGWAGVIWIYSIITYLPLDVLKFIIRYALSRKAWDNLLQNKTAFTTKKDYGKGERETQWASAQRTLHGLQKPEPLFNDTSSYRELSEIAE | 753 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 3782865 | 3787332 | + | CcPI632755_11g003790.1 | Cco11g0379 | 191615 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco11g0379 | 753 | Pfam | E1-E2 ATPase | 132 | 251 | - | - | |
| Cco11g0379 | 753 | Gene3D | - | 392 | 528 | IPR023214 | - | |
| Cco11g0379 | 753 | Gene3D | - | 269 | 283 | IPR023214 | - | |
| Cco11g0379 | 753 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 274 | 280 | IPR018303 | - | |
| Cco11g0379 | 753 | Gene3D | - | 160 | 268 | - | - | |
| Cco11g0379 | 753 | Gene3D | - | 529 | 616 | - | - | |
| Cco11g0379 | 753 | NCBIfam | HAD-IC family P-type ATPase | 466 | 578 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Cco11g0379 | 753 | NCBIfam | HAD-IC family P-type ATPase | 163 | 439 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Cco11g0379 | 753 | Gene3D | - | 294 | 391 | IPR023299 | GO:0000166(InterPro) | |
| Cco11g0379 | 753 | SUPERFAMILY | HAD-like | 265 | 545 | IPR036412 | - | |
| Cco11g0379 | 753 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 14 | 692 | IPR023298 | - | |
| Cco11g0379 | 753 | Pfam | Cation transporter/ATPase, N-terminus | 18 | 81 | IPR004014 | - | |
| Cco11g0379 | 753 | PANTHER | CALCIUM-TRANSPORTING ATPASE | 636 | 721 | - | GO:0005886(PANTHER)|GO:0008553(PANTHER)|GO:0015662(PANTHER)|GO:0016021(PANTHER)|GO:0034220(PANTHER)|GO:0051453(PANTHER)|GO:1902600(PANTHER) | |
| Cco11g0379 | 753 | FunFam | Plasma membrane ATPase | 383 | 539 | - | - | |
| Cco11g0379 | 753 | Pfam | haloacid dehalogenase-like hydrolase | 268 | 505 | - | - | |
| Cco11g0379 | 753 | Gene3D | - | 65 | 119 | - | - | |
| Cco11g0379 | 753 | Gene3D | - | 134 | 159 | - | - | |
| Cco11g0379 | 753 | Gene3D | - | 33 | 133 | - | - | |
| Cco11g0379 | 753 | PRINTS | H+-transporting ATPase (proton pump) signature | 522 | 547 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Cco11g0379 | 753 | PRINTS | H+-transporting ATPase (proton pump) signature | 491 | 507 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Cco11g0379 | 753 | PRINTS | H+-transporting ATPase (proton pump) signature | 348 | 366 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Cco11g0379 | 753 | PRINTS | H+-transporting ATPase (proton pump) signature | 463 | 479 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Cco11g0379 | 753 | PRINTS | P-type cation-transporting ATPase superfamily signature | 272 | 286 | - | - | |
| Cco11g0379 | 753 | PRINTS | P-type cation-transporting ATPase superfamily signature | 386 | 397 | - | - | |
| Cco11g0379 | 753 | PRINTS | P-type cation-transporting ATPase superfamily signature | 514 | 526 | - | - | |
| Cco11g0379 | 753 | PRINTS | P-type cation-transporting ATPase superfamily signature | 408 | 418 | - | - | |
| Cco11g0379 | 753 | PRINTS | P-type cation-transporting ATPase superfamily signature | 491 | 510 | - | - | |
| Cco11g0379 | 753 | SMART | Cation_ATPase_N_a_2 | 15 | 87 | IPR004014 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco11g0379 | Cco-Chr11:3782865 | Cco11g1233 | Cco-Chr11:24483315 | 0.00E+00 | dispersed | |
| Cco11g0379 | Cco-Chr11:3782865 | Cco06g1399 | Cco-Chr6:24452780 | 0.00E+00 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco11g0379 | K01535 | - | csv:101211582 | 1202.19 |