Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco11g0413 | ATGAAGATCCGTTGTGATGTTTGCGAGAAAGAAGAAGCCTCTGTTTTTTGCCCCTCCGACGAAGCGGCCCTCTGCGCCGCCTGTGACCGCCACGTCCACCGCGCCAACAAGCTCGCCGAGAAACACAACCGTTTCTCTCTCCTCCAATCCACCCCCGCCGCTGCCAATTCACTGCCGTTGTGCGATATCTGCCAGGTCCGGCGAGCGTTTCTGTTCTGTCGCGAAGACAGAGCAATCCTCTGTAGAGAATGCGACATTCCAATTCACATCACCAACGATCGAACCCAGAAGCACACCCGGTTTCTTCTCACCGGCGTGAAGGTCTCGCCGTCGCTGTTGGCTTCTTCTACTTCCTCCTCCTCCGTCTCAGGCGGCGGTGAAGAAATTGAAGGCGAAATTGGGTTGTTCAAGAGACGCTCGAGGAAGAGGGCTAAGATGGAGGAATTAGAGAAGCCATTGAACGTTGAAGAAAATGGGGTATCAATAAGCAGTATTTGGGAGTATTTGGAGAGTTTGCCTGGTTGGTGTGTGGAGGAGTTTCTTGATTCTTCATCTGCTGCTGATATTTTTCTGTAA | 576 | 52.08 | MKIRCDVCEKEEASVFCPSDEAALCAACDRHVHRANKLAEKHNRFSLLQSTPAAANSLPLCDICQVRRAFLFCREDRAILCRECDIPIHITNDRTQKHTRFLLTGVKVSPSLLASSTSSSSVSGGGEEIEGEIGLFKRRSRKRAKMEELEKPLNVEENGVSISSIWEYLESLPGWCVEEFLDSSSAADIFL | 191 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 4270059 | 4270634 | - | CcPI632755_11g004130.1 | Cco11g0413 | 191649 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco11g0413 | 191 | CDD | Bbox1_BBX-like | 60 | 103 | IPR049808 | - | |
Cco11g0413 | 191 | ProSiteProfiles | Zinc finger B-box type profile. | 1 | 47 | IPR000315 | GO:0008270(InterPro) | |
Cco11g0413 | 191 | CDD | Bbox1_BBX-like | 5 | 47 | IPR049808 | - | |
Cco11g0413 | 191 | PANTHER | B-BOX ZINC FINGER PROTEIN 22 | 1 | 184 | IPR051979 | GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER) | |
Cco11g0413 | 191 | SMART | bboxneu5 | 4 | 47 | IPR000315 | GO:0008270(InterPro) | |
Cco11g0413 | 191 | SMART | bboxneu5 | 56 | 103 | IPR000315 | GO:0008270(InterPro) | |
Cco11g0413 | 191 | Gene3D | Classic Zinc Finger | 1 | 102 | - | - | |
Cco11g0413 | 191 | ProSiteProfiles | Zinc finger B-box type profile. | 56 | 103 | IPR000315 | GO:0008270(InterPro) | |
Cco11g0413 | 191 | Pfam | B-box zinc finger | 58 | 99 | IPR000315 | GO:0008270(InterPro) | |
Cco11g0413 | 191 | Pfam | B-box zinc finger | 3 | 46 | IPR000315 | GO:0008270(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco07g1085 | Cco-Chr7:24391664 | Cco11g0413 | Cco-Chr11:4270059 | 4.50E-29 | dispersed | |
Cco09g1456 | Cco-Chr9:19798289 | Cco11g0413 | Cco-Chr11:4270059 | 1.30E-34 | dispersed | |
Cco11g0413 | Cco-Chr11:4270059 | Cco02g0508 | Cco-Chr2:4723704 | 2.10E-48 | wgd | |
Cco11g0413 | Cco-Chr11:4270059 | Cco08g1639 | Cco-Chr8:27887923 | 3.10E-39 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
60236 | PF00643 | zf-B_box | 1.60E-06 | No_clan | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco11g0413 | - | - | - | 0.0 |