Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g0413 ATGAAGATCCGTTGTGATGTTTGCGAGAAAGAAGAAGCCTCTGTTTTTTGCCCCTCCGACGAAGCGGCCCTCTGCGCCGCCTGTGACCGCCACGTCCACCGCGCCAACAAGCTCGCCGAGAAACACAACCGTTTCTCTCTCCTCCAATCCACCCCCGCCGCTGCCAATTCACTGCCGTTGTGCGATATCTGCCAGGTCCGGCGAGCGTTTCTGTTCTGTCGCGAAGACAGAGCAATCCTCTGTAGAGAATGCGACATTCCAATTCACATCACCAACGATCGAACCCAGAAGCACACCCGGTTTCTTCTCACCGGCGTGAAGGTCTCGCCGTCGCTGTTGGCTTCTTCTACTTCCTCCTCCTCCGTCTCAGGCGGCGGTGAAGAAATTGAAGGCGAAATTGGGTTGTTCAAGAGACGCTCGAGGAAGAGGGCTAAGATGGAGGAATTAGAGAAGCCATTGAACGTTGAAGAAAATGGGGTATCAATAAGCAGTATTTGGGAGTATTTGGAGAGTTTGCCTGGTTGGTGTGTGGAGGAGTTTCTTGATTCTTCATCTGCTGCTGATATTTTTCTGTAA 576 52.08 MKIRCDVCEKEEASVFCPSDEAALCAACDRHVHRANKLAEKHNRFSLLQSTPAAANSLPLCDICQVRRAFLFCREDRAILCRECDIPIHITNDRTQKHTRFLLTGVKVSPSLLASSTSSSSVSGGGEEIEGEIGLFKRRSRKRAKMEELEKPLNVEENGVSISSIWEYLESLPGWCVEEFLDSSSAADIFL 191
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4270059 4270634 - CcPI632755_11g004130.1 Cco11g0413 191649

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g0413 191 CDD Bbox1_BBX-like 60 103 IPR049808 -
Cco11g0413 191 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
Cco11g0413 191 CDD Bbox1_BBX-like 5 47 IPR049808 -
Cco11g0413 191 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 184 IPR051979 GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER)
Cco11g0413 191 SMART bboxneu5 4 47 IPR000315 GO:0008270(InterPro)
Cco11g0413 191 SMART bboxneu5 56 103 IPR000315 GO:0008270(InterPro)
Cco11g0413 191 Gene3D Classic Zinc Finger 1 102 - -
Cco11g0413 191 ProSiteProfiles Zinc finger B-box type profile. 56 103 IPR000315 GO:0008270(InterPro)
Cco11g0413 191 Pfam B-box zinc finger 58 99 IPR000315 GO:0008270(InterPro)
Cco11g0413 191 Pfam B-box zinc finger 3 46 IPR000315 GO:0008270(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g0413 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g1085 Cco-Chr7:24391664 Cco11g0413 Cco-Chr11:4270059 4.50E-29 dispersed
Cco09g1456 Cco-Chr9:19798289 Cco11g0413 Cco-Chr11:4270059 1.30E-34 dispersed
Cco11g0413 Cco-Chr11:4270059 Cco02g0508 Cco-Chr2:4723704 2.10E-48 wgd
Cco11g0413 Cco-Chr11:4270059 Cco08g1639 Cco-Chr8:27887923 3.10E-39 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1041 Blo01g01583 . Bda01g00506 . Bpe02g00365 . . . Cmo05g00289 Cmo12g00380 Cma01g01945 . Car01g01519 Car12g00406 . . Cpe07g00385 Bhi04g00162 . . . . . . Cla08g01445 Cam08g1926 Cec08g1501 Cco08g1638 Clacu08g1616 . Cre08g1403 Cone4ag1948 . Cone17ag1378 Cone20ag0105 . . . Cme03g01907 . Blo18g00789 Bda08g01236 Bda01g01521 Bpe02g01717 Bpe05g00126 Bma01g00739 Bma05g00152 . Cmo01g02006 . Cma12g00429 Cma05g00283 . . Cpe11g00234 Cpe02g00094 . . . . . . . Cla11g00377 Cam11g0424 Cec11g0420 Cco11g0413 Clacu11g0546 Cmu11g0403 Cre11g0890 Lsi08g01348 Csa02g02104 Chy03g01411 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco08g1564 . 1 337 C2C2-CO-like Transcription Factor Family AT5G24930 61.4 1.8e-83 306.6
Cco06g1497 . 20 375 C2C2-CO-like Transcription Factor Family AT5G24930 51.4 8.8e-59 224.6
Cco06g1497 . 1 375 C2C2-CO-like Transcription Factor Family AT5G57660 50.5 1.7e-67 253.4
Cco08g1564 . 2 337 C2C2-CO-like Transcription Factor Family AT5G57660 51.0 8.3e-54 208.0
Cco02g1179 . 1 416 C2C2-CO-like Transcription Factor Family AT3G07650 54.0 5.8e-90 328.2
Cco02g0319 . 1 407 C2C2-CO-like Transcription Factor Family AT3G07650 54.5 2.9e-89 325.9
Cco02g1179 . 1 416 C2C2-CO-like Transcription Factor Family AT5G48250 54.1 2.1e-87 319.7
Cco02g0319 . 1 407 C2C2-CO-like Transcription Factor Family AT5G48250 54.7 3.9e-86 315.5
Cco02g1179 . 1 416 C2C2-CO-like Transcription Factor Family AT5G48250 54.1 2.1e-87 319.7
Cco02g0319 . 1 407 C2C2-CO-like Transcription Factor Family AT5G48250 54.7 3.9e-86 315.5
Cco02g0508 . 1 208 C2C2-CO-like Transcription Factor Family AT1G75540 55.2 3.6e-51 199.1
Cco11g0413 . 1 184 C2C2-CO-like Transcription Factor Family AT1G75540 53.2 1.4e-42 170.6
Cco07g1085 . 1 298 C2C2-CO-like Transcription Factor Family AT1G78600 50.3 4.1e-76 282.0
Cco07g0890 . 1 185 C2C2-CO-like Transcription Factor Family AT2G21320 61.1 9.6e-56 213.4
Cco04g1775 . 1 107 C2C2-CO-like Transcription Factor Family AT2G21320 81.3 5.7e-48 187.6
Cco07g0890 . 1 186 C2C2-CO-like Transcription Factor Family AT4G38960 63.4 6.4e-58 220.7
Cco04g1775 . 1 107 C2C2-CO-like Transcription Factor Family AT4G38960 82.2 1.2e-48 189.9
Cco02g0508 . 1 198 C2C2-CO-like Transcription Factor Family AT4G39070 59.9 3.0e-55 212.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000846 4 5 1 2 4 3 4 3 3 3 3 3 4 3 3 4 3 2 4 3 3 3 3 4 3 3 2 3 2 0 90
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60236 PF00643 zf-B_box 1.60E-06 No_clan Cco TF