Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g0413 ATGAAGATCCGTTGTGATGTTTGCGAGAAAGAAGAAGCCTCTGTTTTTTGCCCCTCCGACGAAGCGGCCCTCTGCGCCGCCTGTGACCGCCACGTCCACCGCGCCAACAAGCTCGCCGAGAAACACAACCGTTTCTCTCTCCTCCAATCCACCCCCGCCGCTGCCAATTCACTGCCGTTGTGCGATATCTGCCAGGTCCGGCGAGCGTTTCTGTTCTGTCGCGAAGACAGAGCAATCCTCTGTAGAGAATGCGACATTCCAATTCACATCACCAACGATCGAACCCAGAAGCACACCCGGTTTCTTCTCACCGGCGTGAAGGTCTCGCCGTCGCTGTTGGCTTCTTCTACTTCCTCCTCCTCCGTCTCAGGCGGCGGTGAAGAAATTGAAGGCGAAATTGGGTTGTTCAAGAGACGCTCGAGGAAGAGGGCTAAGATGGAGGAATTAGAGAAGCCATTGAACGTTGAAGAAAATGGGGTATCAATAAGCAGTATTTGGGAGTATTTGGAGAGTTTGCCTGGTTGGTGTGTGGAGGAGTTTCTTGATTCTTCATCTGCTGCTGATATTTTTCTGTAA 576 52.08 MKIRCDVCEKEEASVFCPSDEAALCAACDRHVHRANKLAEKHNRFSLLQSTPAAANSLPLCDICQVRRAFLFCREDRAILCRECDIPIHITNDRTQKHTRFLLTGVKVSPSLLASSTSSSSVSGGGEEIEGEIGLFKRRSRKRAKMEELEKPLNVEENGVSISSIWEYLESLPGWCVEEFLDSSSAADIFL 191
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4270059 4270634 - CcPI632755_11g004130.1 Cco11g0413 191649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g0413 191 CDD Bbox1_BBX-like 60 103 IPR049808 -
Cco11g0413 191 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
Cco11g0413 191 CDD Bbox1_BBX-like 5 47 IPR049808 -
Cco11g0413 191 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 184 IPR051979 GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER)
Cco11g0413 191 SMART bboxneu5 4 47 IPR000315 GO:0008270(InterPro)
Cco11g0413 191 SMART bboxneu5 56 103 IPR000315 GO:0008270(InterPro)
Cco11g0413 191 Gene3D Classic Zinc Finger 1 102 - -
Cco11g0413 191 ProSiteProfiles Zinc finger B-box type profile. 56 103 IPR000315 GO:0008270(InterPro)
Cco11g0413 191 Pfam B-box zinc finger 58 99 IPR000315 GO:0008270(InterPro)
Cco11g0413 191 Pfam B-box zinc finger 3 46 IPR000315 GO:0008270(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g1085 Cco-Chr7:24391664 Cco11g0413 Cco-Chr11:4270059 4.50E-29 dispersed
Cco09g1456 Cco-Chr9:19798289 Cco11g0413 Cco-Chr11:4270059 1.30E-34 dispersed
Cco11g0413 Cco-Chr11:4270059 Cco02g0508 Cco-Chr2:4723704 2.10E-48 wgd
Cco11g0413 Cco-Chr11:4270059 Cco08g1639 Cco-Chr8:27887923 3.10E-39 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60236 PF00643 zf-B_box 1.60E-06 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g0413 - - - 0.0