Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g0415 ATGCTGACGAAGTTTGAAACCAAGAGTAATAGAGTCAAAGGGTTGAGTTTCCACAGTAAGAGGCCATGGATCCTTGCAAGTCTTCACAGCGGAGTGATCCAGCTATGGGATTACCGGATGGGCACACTTATTGATAGATTTGATGAGCATGAGGGGCCTGTTCGTGGTGTTCACTTTCACAAGTCTCAGCCTCTTTTTGTGTCTGGAGGGGATGATTATAAGATTAAAGTGTGGAACTATAAGACTCATAGGTGTCTATTTACTCTTCTTGGACACCTTGATTATATACGTACTGTGCAATTTCACCATGAGTATCCATGGATTGTGAGTGCTAGTGATGATCAGACTATTCGTATATGGAACTGGCAATCACGTACATGTATCTCTGTGTTGACGGGCCACAATCACTATGTAATGTGTGCATCATTCCACCTTAAGGAAGATCTTGTTGTGTCAGCTTCCCTAGATCAGACCGTTCGTGTATGGGACATTGGTGCCTTGAGGAAGAAGACTGTATCTCCAGCAGATGATGTCTTGCGGTTGAGTCAAATGAATGCTGATCTATTTGGCGGAGTTGATGCTGTTGTTAAATATGTCTTGGAAGGTCATGATCGAGGGGTTAATTGGGCGGCATTCCATCCAACCTTGCCATTGATTGTGTCAGGGGCTGATGATCGACAAGTGAAATTGTGGCGAATGAACGACACAAAAGCGTGGGAAGTGGACACACTAAGGGGGCACATGAATAATGTTTCATGTGTGATGTTCCATGCCAAACAAGATATAATCGTTTCCAACTCAGAGGATAAAAGCATTCGTATTTGGGATGCTACAAAGCGAACTGGACTTCAGACATTTCGTAGAGAGCATGATAGATTTTGGATTCTTGCTGCTCACCCTGAGATGAATTTGTTGGCAGCTGGGCATGACAGTGGCATGATTGTATTTAAGCTGGAGAGAGAAAGACCGGCCTTTGCTATAAGTGGCGATTCTCTATTTTATGTGAAGGACCGCTTTTTGCGCTTCTATGAGTTCTCCACTCAAAAAGATTCACAGGTCATCCCGATTCGAAGGCCTGGTTCCACTAGCTTGAATCAGAGCCCAAGGACCCTTTCATTTAGCCCTACTGAAAACACAATTCTTATTTGCTCAGATCTGGATGGGGGGTGTTATGAATTTTACACCATTCCTAAGGATAGCTTTGGTAGAAGCGATGGCTTCCAAGATGCTAAGAGAGGACTTGGAGGATCGGCAGTGTTTGTGGCTCGGAATAGGTTTGCCGTGCTCGATAAAAGTCACAACCAAGTCTTGTTAAAAAATCTTAAGAATGAGGTTGTTAAGAAGGTCCCTATTCCCATTACTGCAGATGCAATATTTTATGCTGGAACTGGTAATTTATTGTGCCGAGCAGAGGATAGAGTTGTTATATATGATCTTCAACAGCGAATTATCCTTGGTGATCTTCAAACCCCATTTGTTAGGTACGTTGTTTGGTCCAATGACATGGAGAGTGTTGCATTGCTTAGCAAACATGCAATTATTATTGCTAACAAGAAACTTGTTCACCAGTGCACACTTCATGAGACAATTCGTGTAAAGAGTGGAGCATGGGATGATAATGGTGTTTTTATCTACACAACCCTAAACCACATTAAGTATTGCCTCCCGAATGGAGATAGTGGTATAATCAGAACCCTCGATGTTCCAATATATATTACAAAGGTTTCTGGCAATACACTTTTTTGCTTGGATAGGGATGGAACTGTTCGATCGTTGATTATTGATGCAACAGAATACATATTCAAACTCTCTCTCCTGAAGAAGAGATTTGACCATGTCATGAGCATGATAAAGAACTCACAGCTCTGTGGGCAAGCAATGATTGCCTATTTGCAACAAAAGGGATTTCCTGAAGTTGCACTTCACTTTGTGAAGGACGAGAGAACCAGGTTCAATTTGGCTCTTGAAAGTGGAAACATTCAGATTGCAGTTGCTTCTGCTACAGCAATTGATGAGAAAGATCATTGGTATAGGCTGGGTGTGGAGGCTCTTCGTCAAGGCAATGCAGGCATTGTGGAATACGCCTATCAGAAGACAAAAAATTTTGAGAGGTTATCATTTCTTTATCTCATAACTGGTAACACAGCAAAACTGTCCAAGATGTTGAAGATCGCTGAAGTTAAGAATGATGTCATGGGTCAATTTCACAATGCTCTATATCTTGGTGATGTGCGTGAGCGCGTAAAGATCTTGGAGAGTGTTGGCCACTTACCTCTTGCGTACATCACAGCATCAACCCATGGTTTACATGATGTAGCTGAAAGGCTAGCTGCTGAATTGGGAGATGACATTCCATCTTTACCAGAAGGCAAGACCGCATCCCTCCTCTTGCCTCCTACTCCAGTCATGTGCGGTGGTGATTGGCCACTTCTGAGAGTCATGAAAGGAATATTTGAAGGTGGGCTGGATAATGTGGGTGCTGGTCGTGTTGACGAAGACGATGACGAGGTTGCAGATGGTGATTGGGGTGAGGAGCTGGATGTGGTTGATGTTGATGGCTTACAGAATGGGGATGTGACAGCAATTTTGGAGGATGAGGAAGGTGCAGAAGGAAATGAGGAAGAAGGGGGATGGGACCTTGAAGATTTGGAACTCCCACCAGAGGCTGACACCCCAAAAGTATCAGTCAGTTCTCGCAGTTCAGTTTTTGTGGCCCCAACTCCTGGCCTGCCTGCCAACCAGGTTTGGATACAGAGGTCGTCCCTTGCTGCAGAGCATGCTGCGGCTGGTAATTTTGATACTGCAATGCGGTTGCTTAGCAGACAACTAGGAATTAAAAACTTTTCTCCCTTAAGACCCATATTTCTTGATCTTCATGCCGGGAGTCAAACCTATCTTCGTGCCTTTTCATCTGCTCCCATAATATTATTAGCAGTTGAACGAGGATTCAGTGAATCTAGCAATCCGAATGCAAAAGGATCTCCTGCACTTATTTACAGTTTCACTCAGTTGGAGGAGAAGCTTAAAGCTGGTTACAAGGCCACAACATCAGGGAAGTTTGCTGAGGCTCTTCGTCTTTTTCTTTCTATTCTTTATACCATCCCTCTGATTGTTGTTGAGTCTAGGAGGGAAGTGGATGAGGTGAAGGAGTTAATTATTATCGTTAAAGAGTATGTTTTGGGTTTGCAAATGGAACTGAAGAGGAGGGAACTCAAGGACAATCCAGTACGCCAGATGGAGCTTGCAGCCTATTTTACGCACTGCAACCTGCAGTTGCCACATTTGAGGCTTGCTCTATTAAATGCTATGACTGTCTGTTACAAGGCTAAGAACCTTGCCAGTGCTGCAAACTTTGCTCGCAGACTTCTTGAGACTAATCCCTCAATTGAGAATCAAGCTAAGACAGCCAGGCAAGTTCTGCAGGCTGCAGAGAGGAATATGACAGATGCCTCCCAACTGAATTATGACTTTAGAAACCCTTTCGTGACCTGTGGTGCAACTTATGTTCCAATTTACCGAGGTCAGAAGGATGTTTCTTGCCCATACTGTAGTTCCAGGTTTGTGCCAGGTCAGGAAGGGAAAATTTGCACTGTTTGTGATCTTGCTGTTATTGGAGCAGATGCATCTGGAGCTTTGTTGTTGAGTATTTACGTCTCCTCGTGGAAGGTAAATGAAAGTGATGGATGGAGTAAAACAGCTAGCGAAGCTACCTTGAAAACAATTTCAGTTGTCTGCTTACTTGCGACCCTAGCTCCATTTATTGTTGTCTGTAGAGCGGCCAGAGCTTCTTGCTTGGTAAAAGATGAACATGTCTGTGAGCTTCCTTTTGCTTATCTGTTCTCTTGCATCTCTGAACTCGACTTTTAG 3867 43.68 MLTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHEGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKTHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHLKEDLVVSASLDQTVRVWDIGALRKKTVSPADDVLRLSQMNADLFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNDTKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRIWDATKRTGLQTFRREHDRFWILAAHPEMNLLAAGHDSGMIVFKLERERPAFAISGDSLFYVKDRFLRFYEFSTQKDSQVIPIRRPGSTSLNQSPRTLSFSPTENTILICSDLDGGCYEFYTIPKDSFGRSDGFQDAKRGLGGSAVFVARNRFAVLDKSHNQVLLKNLKNEVVKKVPIPITADAIFYAGTGNLLCRAEDRVVIYDLQQRIILGDLQTPFVRYVVWSNDMESVALLSKHAIIIANKKLVHQCTLHETIRVKSGAWDDNGVFIYTTLNHIKYCLPNGDSGIIRTLDVPIYITKVSGNTLFCLDRDGTVRSLIIDATEYIFKLSLLKKRFDHVMSMIKNSQLCGQAMIAYLQQKGFPEVALHFVKDERTRFNLALESGNIQIAVASATAIDEKDHWYRLGVEALRQGNAGIVEYAYQKTKNFERLSFLYLITGNTAKLSKMLKIAEVKNDVMGQFHNALYLGDVRERVKILESVGHLPLAYITASTHGLHDVAERLAAELGDDIPSLPEGKTASLLLPPTPVMCGGDWPLLRVMKGIFEGGLDNVGAGRVDEDDDEVADGDWGEELDVVDVDGLQNGDVTAILEDEEGAEGNEEEGGWDLEDLELPPEADTPKVSVSSRSSVFVAPTPGLPANQVWIQRSSLAAEHAAAGNFDTAMRLLSRQLGIKNFSPLRPIFLDLHAGSQTYLRAFSSAPIILLAVERGFSESSNPNAKGSPALIYSFTQLEEKLKAGYKATTSGKFAEALRLFLSILYTIPLIVVESRREVDEVKELIIIVKEYVLGLQMELKRRELKDNPVRQMELAAYFTHCNLQLPHLRLALLNAMTVCYKAKNLASAANFARRLLETNPSIENQAKTARQVLQAAERNMTDASQLNYDFRNPFVTCGATYVPIYRGQKDVSCPYCSSRFVPGQEGKICTVCDLAVIGADASGALLLSIYVSSWKVNESDGWSKTASEATLKTISVVCLLATLAPFIVVCRAARASCLVKDEHVCELPFAYLFSCISELDF 1288
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4282035 4287507 - CcPI632755_11g004150.1 Cco11g0415 191651

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g0415 1288 ProSitePatterns Trp-Asp (WD) repeats signature. 150 164 IPR019775 -
Cco11g0415 1288 Gene3D - 640 812 - -
Cco11g0415 1288 SMART WD40_4 2 37 IPR001680 GO:0005515(InterPro)
Cco11g0415 1288 SMART WD40_4 124 163 IPR001680 GO:0005515(InterPro)
Cco11g0415 1288 SMART WD40_4 237 276 IPR001680 GO:0005515(InterPro)
Cco11g0415 1288 SMART WD40_4 40 79 IPR001680 GO:0005515(InterPro)
Cco11g0415 1288 SMART WD40_4 82 121 IPR001680 GO:0005515(InterPro)
Cco11g0415 1288 SMART WD40_4 193 232 IPR001680 GO:0005515(InterPro)
Cco11g0415 1288 SMART WD40_4 279 317 IPR001680 GO:0005515(InterPro)
Cco11g0415 1288 FunFam Coatomer subunit alpha 640 812 - -
Cco11g0415 1288 ProSiteProfiles Trp-Asp (WD) repeats profile. 244 285 IPR001680 GO:0005515(InterPro)
Cco11g0415 1288 Pfam Coatomer WD associated region 340 768 IPR006692 GO:0005198(InterPro)|GO:0006886(InterPro)|GO:0016192(InterPro)|GO:0030117(InterPro)
Cco11g0415 1288 SUPERFAMILY WD40 repeat-like 4 315 IPR036322 GO:0005515(InterPro)
Cco11g0415 1288 CDD WD40 9 317 - -
Cco11g0415 1288 SUPERFAMILY C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase 236 548 IPR011048 -
Cco11g0415 1288 ProSiteProfiles Trp-Asp (WD) repeats profile. 200 241 IPR001680 GO:0005515(InterPro)
Cco11g0415 1288 PRINTS G protein beta WD-40 repeat signature 108 122 IPR020472 -
Cco11g0415 1288 PRINTS G protein beta WD-40 repeat signature 263 277 IPR020472 -
Cco11g0415 1288 PRINTS G protein beta WD-40 repeat signature 150 164 IPR020472 -
Cco11g0415 1288 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 131 164 - -
Cco11g0415 1288 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 47 82 - -
Cco11g0415 1288 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 244 276 - -
Cco11g0415 1288 ProSiteProfiles Trp-Asp (WD) repeats profile. 47 88 IPR001680 GO:0005515(InterPro)
Cco11g0415 1288 PIRSF Alpha-COP 1 1215 IPR016391 GO:0006886(InterPro)|GO:0006888(InterPro)|GO:0030126(InterPro)
Cco11g0415 1288 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 89 121 - -
Cco11g0415 1288 ProSiteProfiles Trp-Asp (WD) repeats profile. 131 164 IPR001680 GO:0005515(InterPro)
Cco11g0415 1288 Pfam Coatomer (COPI) alpha subunit C-terminus 815 1213 IPR010714 GO:0005198(InterPro)|GO:0005515(InterPro)|GO:0006886(InterPro)|GO:0016192(InterPro)|GO:0030126(InterPro)
Cco11g0415 1288 ProSiteProfiles Trp-Asp (WD) repeats profile. 89 130 IPR001680 GO:0005515(InterPro)
Cco11g0415 1288 CDD Coatomer_WDAD_alpha 323 776 IPR047312 -
Cco11g0415 1288 FunFam Coatomer subunit alpha 1 319 - -
Cco11g0415 1288 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 200 234 - -
Cco11g0415 1288 PANTHER COATOMER 3 723 IPR050844 GO:0006886(PANTHER)|GO:0006888(PANTHER)|GO:0006890(PANTHER)|GO:0006891(PANTHER)|GO:0030126(PANTHER)
Cco11g0415 1288 Coils Coil 1126 1153 - -
Cco11g0415 1288 Gene3D - 1 319 IPR015943 GO:0005515(InterPro)
Cco11g0415 1288 Pfam WD domain, G-beta repeat 126 163 IPR001680 GO:0005515(InterPro)
Cco11g0415 1288 Pfam WD domain, G-beta repeat 84 121 IPR001680 GO:0005515(InterPro)
Cco11g0415 1288 Pfam WD domain, G-beta repeat 198 231 IPR001680 GO:0005515(InterPro)
Cco11g0415 1288 Pfam WD domain, G-beta repeat 241 276 IPR001680 GO:0005515(InterPro)
Cco11g0415 1288 Pfam WD domain, G-beta repeat 42 79 IPR001680 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g0415 K05236 - - csv:101207280 2331.98
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco09g0217 Cco-Chr9:1946344 Cco11g0415 Cco-Chr11:4282035 5.10E-15 dispersed
Cco11g0415 Cco-Chr11:4282035 Cco11g0416 Cco-Chr11:4292906 0.00E+00 tandem
Cco11g0415 Cco-Chr11:4282035 Cco02g0509 Cco-Chr2:4746705 0.00E+00 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1035 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo17g00761 Blo18g00790 Bda08g01238 Bda01g01520 Bpe02g01716 Bpe05g00125 Bma01g00740 Bma05g00150 . . . . . . . . . . . . . . . . Cla11g00380 Cam11g0427 Cec11g0421 Cco11g0415 Clacu11g0549 Cmu11g0406 Cre11g0892 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000684 3 4 3 3 2 3 5 3 3 3 3 3 5 3 3 5 3 4 3 3 3 3 3 3 3 2 3 7 4 1 99