Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g0417 ATGGTAAAGTGTTTCTCTCTCATCGTCGCTCTCTCTCTCCTCGCCGTATCGGCGATTGGCGCCGAGGTCTTCTCCGGAGAATCGGACGGAGATTTTGTTATCCGTCAGGTTGTTGACGACGGAGGAGTCAACGGAGGAAGTAACGGCGACGATCTGCTACTCGGAGCCGAGCACCACTTTTCGCTCTTTAAGCGAAAGTTTGGGAAGTCGTACGCTTCCAAGGAGGAGCATGATCACCGGTTCAGGGTATTCAAAGCCAACCTGAGGCGCGCTCAACGCCACCAGGCCCTTGATCCCTCTGCTACTCATGGCGTCACTCAGTTCTCTGATTTGACTCCATCGGAGTTCCGAAGATCGTTTCTAGGGCTTAGAGGTCGTCGTCTTGGACTCCCTGCGGATGCTAACAAGGCCCCCATTCTTCCTACCGATGGTCTTCCAACTGATTTCGATTGGAGAGATCATGGCGCCGTAACGGAAGTCAAGAATCAGGGTTCGTGTGGATCCTGCTGGAGTTTCAGTACAACCGGTGCTCTTGAAGGCGCTAACTTCCTTGCTACCGGAAAACTTGTTAGCCTTAGCGAACAACAGCTTGTAGATTGTGATCACGAGTGTGATCCAGAAGAAAAAGATTCCTGTGATTCTGGCTGCAATGGAGGGCTAATGAATAGTGCATTCGAGTACACATTGAAAGCCGGTGGACTTATGAAAGAGAACGACTACCCATACGCTGGTACAGATCGTGGAACCTGCAAATTTGACAAGAGCAAAATTGCTGCATCAGTAGCCAACTTTAGTGTTGTCTCTCTTGATGAAGAACAAATTGCTGCCAATCTCGTGAAGAATGGCCCTCTTGCAATTGCTATCAATGCTGTATTCATGCAAACATATATAGGAGGGGTTTCTTGCCCTTACATTTGCTCAAAACATTTGGATCATGGAGTTCTATTGGTTGGTTATGGATCTGGTGCCTATGCTCCCATCCGATTGAAAGAGAAACCATACTGGATCATTAAGAACTCCTGGGGAGCCAACTGGGGGGAGAATGGATACTACAAAATCTGCAGGGGCCGGAATATCTGTGGAGTCGACTCCATGGTGTCGACAGTCGCTGCAGTTCATACCGCTGCGAATTAA 1134 49.03 MVKCFSLIVALSLLAVSAIGAEVFSGESDGDFVIRQVVDDGGVNGGSNGDDLLLGAEHHFSLFKRKFGKSYASKEEHDHRFRVFKANLRRAQRHQALDPSATHGVTQFSDLTPSEFRRSFLGLRGRRLGLPADANKAPILPTDGLPTDFDWRDHGAVTEVKNQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEKDSCDSGCNGGLMNSAFEYTLKAGGLMKENDYPYAGTDRGTCKFDKSKIAASVANFSVVSLDEEQIAANLVKNGPLAIAINAVFMQTYIGGVSCPYICSKHLDHGVLLVGYGSGAYAPIRLKEKPYWIIKNSWGANWGENGYYKICRGRNICGVDSMVSTVAAVHTAAN 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4300049 4302144 - CcPI632755_11g004170.1 Cco11g0417 191653

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g0417 377 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 65 362 IPR013128 GO:0004197(PANTHER)|GO:0005615(PANTHER)|GO:0005764(PANTHER)|GO:0008234(InterPro)|GO:0051603(PANTHER)
Cco11g0417 377 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 334 353 IPR025661 -
Cco11g0417 377 SMART Inhibitor_I29_2 60 116 IPR013201 -
Cco11g0417 377 CDD Peptidase_C1A 146 369 IPR039417 -
Cco11g0417 377 Gene3D Cysteine proteinases 47 370 - -
Cco11g0417 377 SUPERFAMILY Cysteine proteinases 58 369 IPR038765 -
Cco11g0417 377 FunFam Cysteine protease RD19A 32 370 - -
Cco11g0417 377 Pfam Cathepsin propeptide inhibitor domain (I29) 60 116 IPR013201 -
Cco11g0417 377 Pfam Papain family cysteine protease 145 368 IPR000668 GO:0006508(InterPro)|GO:0008234(InterPro)
Cco11g0417 377 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 163 174 IPR000169 -
Cco11g0417 377 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 310 320 IPR025660 -
Cco11g0417 377 PRINTS Papain cysteine protease (C1) family signature 312 322 IPR000668 GO:0006508(InterPro)|GO:0008234(InterPro)
Cco11g0417 377 PRINTS Papain cysteine protease (C1) family signature 163 178 IPR000668 GO:0006508(InterPro)|GO:0008234(InterPro)
Cco11g0417 377 PRINTS Papain cysteine protease (C1) family signature 334 340 IPR000668 GO:0006508(InterPro)|GO:0008234(InterPro)
Cco11g0417 377 SMART pept_c1 145 370 IPR000668 GO:0006508(InterPro)|GO:0008234(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g0417 K01373 - - csv:101204401 687.952
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2384 Cco-Chr5:32331667 Cco11g0417 Cco-Chr11:4300049 1.20E-114 dispersed
Cco10g1312 Cco-Chr10:26062233 Cco11g0417 Cco-Chr11:4300049 2.40E-17 dispersed
Cco11g0417 Cco-Chr11:4300049 Cco11g1951 Cco-Chr11:32067263 5.20E-54 dispersed
Cco11g0417 Cco-Chr11:4300049 Cco02g0513 Cco-Chr2:4783411 5.30E-176 wgd
Cco11g0417 Cco-Chr11:4300049 Cco08g1645 Cco-Chr8:27939533 1.80E-152 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1030 . . . . . . . . . . . . . . . . . Bhi04g00217 . . . Hepe10g0121 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla11g00383 Cam11g0429 Cec11g0423 Cco11g0417 Clacu11g0551 Cmu11g0408 Cre11g0894 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000642 3 3 5 4 4 3 3 3 3 3 2 3 6 3 3 4 3 5 5 3 3 3 3 3 3 3 2 4 3 4 102