Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g0420 ATGGCAACTTACTACTCTAGTTCGAATAACGAAAGGGATGCTACTCCCATCCTCTATTCAAGGGGATCTTTGCTCGGTTCGTATGAAGAAACAACAGTTCTTCCTCGGAATATGATGATGCATGTAAATTCTGGGACATACATGGATTCATTGCCTTCGCAGGCGCAAAATGGTTGTGGTCAGATAACGTCCGTTGGAGCAGCGGGAACTACCCAACAGCAGCAAGAGTTTTTATCGAATCTTGGTGGTTCGCAAATTGCTGAGCATGATTTCAATACATGGAGAGAGAACCGGAGTGAAATGCTTGGCACGAACTCGATGCGTGGCCCTACCAATGTTCTTCATGCTGGGCATAATTTGCAGGGTCAGGGGTTATCCCTTACTCTCAGTACACAAATCCCATCTGCAATCCAAATCCCTTCAATCCCCTACAGAAATTCGGATATGGGTTTAACTTCATTCCTGAGTCCTAATCCGACTAATTCAGGCGAGGATGGCTGCAGAAATGGCGCTTCTAGAGACGAACAGATGAGAAATGGAGAAAACTTGCCACCTAATTTTCAAGAATTGGCTAAGGGTGAATTATCTCAATACAGCATGTCTAGTATTGCAAGAACTATGCCCAATTCAAAGTACCTCAAGGCAGCTCAACAACTGCTTGATGAAGTTGTTAATGTCAGGAAAGCTTTGAAGCGACCTAATAACGAGAGAAACCAGAGTTCACATGAGCATGAAACTAGAAGTGCAAAGAATGGTGATGCAGGAACCAAAAATGACAGTTCGATGCTCACTGCAAGTGGAGCATCTTCAAACCCTCAAGAAACTGGGAGCAATTCAACATGTGAGCTCTCACATGCCGAAAAGCAAGATTTGCAGAACAAGTTGACAAAGCTTTTATACATGTTGGATGAGGTTGATAGAAGGTACAATCAGTATTATCATCAGATGCAGATTGTGGTGTCATCATTTGATGTGATAGCTGGATGTGGGGCATCTAAACCATATACTGCACTTGCTCTCCAGACTATATCCCGTCATTTTCGGTGCTTGCGGGATGCAATAGCTGGCCAAGTCAGAGCTACCCGTAAAAGCCTAGGAGAGCATGAGAATTCTGGAAATGACAAAGGAGTTGGAATCACTCGTCTCCGATATGTGGACCAGCAGTTAAGGCAACAGAGGGCTCTTCAGCAGCTTGGTATGATTCAGCAGCATGCTTGGAGGCCTCAAAGAGGGTTGCCTGAGAACTCTGTTTCAATTCTCCGTGCTTGGCTGTTCGAGCATTTCCTTCATCCGTATCCAAAGGATTCTGATAAGATCATGCTGGCACGGCAGACAGGATTGACTAGAAGTCAGGTCTCTAATTGGTTTATCAATGCGCGTGTACGTCTTTGGAAACCTATGGTAGAGGAGATGTACAAGGAAGAAATAGGAAGTGTAGACATGGACTCTATATCATCATCTGAAAATGCTGTAAAGGCAACAAAAGGAGATAACAAGACCTTTGAGGATGATAAAGAGGAGGATCTGCAACAAAGTGCAAGCTCAACAGCCACCGAAAGATGTAGCGCTGGAGACATTATCGACTTAAAATCTGATCAAGTCTCTAATCTCGGAAATTCCAGTTCCAACAGACTAGCTAGTTTCCAAAATGGTGCTCACATTGAAGCCCAAAATGAGCTGGTGAAACCGAGCGAGGAGTTAAGGCCTAATGTAAATAACTCTAGTTTCTTTCCTGATGCAATTGTCCACTCTCAGGGTGAGAGTGACAGGTTTATGGCTGCCGCTGCTGCCTATCACATGTCTGAATTGGGAAGGTTTGGGACGGTTGGCGGGGTATCGCTTACGCTGGGTTTGCAGCATTGTGAGGGTGGTGGCATGCCTATGCCTGCTGGGACACATCATGGTTTTGCAGCCATGAGAGGAGACGATATGTACAATGCCGCAGCGTCTTCTCTCGGGGAAACAGTGCATTTTGAATGCGTAAATAGTGGGAATCCGCAACCGAGGTTTGGCCCTTCCCATCTTTATCATGATTTTGTTGTGTAA 2046 45.06 MATYYSSSNNERDATPILYSRGSLLGSYEETTVLPRNMMMHVNSGTYMDSLPSQAQNGCGQITSVGAAGTTQQQQEFLSNLGGSQIAEHDFNTWRENRSEMLGTNSMRGPTNVLHAGHNLQGQGLSLTLSTQIPSAIQIPSIPYRNSDMGLTSFLSPNPTNSGEDGCRNGASRDEQMRNGENLPPNFQELAKGELSQYSMSSIARTMPNSKYLKAAQQLLDEVVNVRKALKRPNNERNQSSHEHETRSAKNGDAGTKNDSSMLTASGASSNPQETGSNSTCELSHAEKQDLQNKLTKLLYMLDEVDRRYNQYYHQMQIVVSSFDVIAGCGASKPYTALALQTISRHFRCLRDAIAGQVRATRKSLGEHENSGNDKGVGITRLRYVDQQLRQQRALQQLGMIQQHAWRPQRGLPENSVSILRAWLFEHFLHPYPKDSDKIMLARQTGLTRSQVSNWFINARVRLWKPMVEEMYKEEIGSVDMDSISSSENAVKATKGDNKTFEDDKEEDLQQSASSTATERCSAGDIIDLKSDQVSNLGNSSSNRLASFQNGAHIEAQNELVKPSEELRPNVNNSSFFPDAIVHSQGESDRFMAAAAAYHMSELGRFGTVGGVSLTLGLQHCEGGGMPMPAGTHHGFAAMRGDDMYNAAASSLGETVHFECVNSGNPQPRFGPSHLYHDFVV 681
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4344386 4347513 + CcPI632755_11g004200.1 Cco11g0420 191656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g0420 681 SUPERFAMILY Homeodomain-like 407 474 IPR009057 -
Cco11g0420 681 MobiDBLite consensus disorder prediction 150 187 - -
Cco11g0420 681 FunFam BEL1-like homeodomain protein 4 409 471 - -
Cco11g0420 681 SMART prehox3 201 356 IPR006563 -
Cco11g0420 681 ProSiteProfiles 'Homeobox' domain profile. 403 466 IPR001356 GO:0003677(InterPro)
Cco11g0420 681 MobiDBLite consensus disorder prediction 150 167 - -
Cco11g0420 681 Pfam Homeobox KN domain 423 462 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Cco11g0420 681 SMART HOX_1 406 470 IPR001356 GO:0003677(InterPro)
Cco11g0420 681 MobiDBLite consensus disorder prediction 231 285 - -
Cco11g0420 681 Pfam Associated with HOX 208 355 IPR006563 -
Cco11g0420 681 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 153 503 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cco11g0420 681 Gene3D - 401 479 - -
Cco11g0420 681 Coils Coil 288 308 - -
Cco11g0420 681 MobiDBLite consensus disorder prediction 253 285 - -
Cco11g0420 681 CDD homeodomain 406 467 IPR001356 GO:0003677(InterPro)
Cco11g0420 681 MobiDBLite consensus disorder prediction 231 252 - -
Cco11g0420 681 MobiDBLite consensus disorder prediction 486 520 - -
Cco11g0420 681 MobiDBLite consensus disorder prediction 495 510 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g2400 Cco-Chr2:36351654 Cco11g0420 Cco-Chr11:4344386 7.00E-81 dispersed
Cco04g1384 Cco-Chr4:29223308 Cco11g0420 Cco-Chr11:4344386 7.80E-72 dispersed
Cco08g1876 Cco-Chr8:29783625 Cco11g0420 Cco-Chr11:4344386 2.90E-37 dispersed
Cco09g0266 Cco-Chr9:2388096 Cco11g0420 Cco-Chr11:4344386 7.60E-93 dispersed
Cco10g2138 Cco-Chr10:34601680 Cco11g0420 Cco-Chr11:4344386 2.20E-49 dispersed
Cco11g0420 Cco-Chr11:4344386 Cco10g1818 Cco-Chr10:31809157 5.60E-83 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60237 PF07526 POX 4.00E-51 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g0420 - - - 0.0