Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g0426 ATGGGATCTGCGTGTTGTGTTGCTGCTAGGGACAAGACTATAGTAAGTGGATCTGGAAGTGAAACCTTATGTAGGAATATAAGGTATTCACCTAGTTGGAGCTTTCGATGGGATAATCGTGGACGGGTAGCTGGCGAAGAGACTTCCATAAATTGGTTTTCTGATGGTGTTAGCCGCAATGATAGAGTGGAACTGAAGTTTGAGTCGGCATATGCATCAGAGGATGGAAGTCCACTTGAACATCTCCGTAGACGTGCATGGCAAAAGTCCCCACCACCAGAAGGCACAACTAATAATTTGAGGACTCCTAGTTCAGGTCAATCAAATTCAAGGAATATATCGACAGATGTGAGTATAGAACAGGTGAAGGAGGCTATAGAATCTCCCACAGCTTCATATAAGTCTCCTGCAAAATTGTCACTTTCATTGCCTTCAACTTCATCTTTGTCAACATCTCCTTTGTCATCTCAGAGTTATCTGCCTCCAACCAATTCATCCCTAACAAGATGTTCCCACCGATCTCCAGGACATCAGTTGTTGCGTCAAGTGTCTGACAGCCGAATCCGAGGATTAAAATCACCAAGTAGCTATTTAGCTTCGGAAGATAGACCAAGACTTCCCTCTTGGAGCAATGAATCGGTCCGGGACTCACATGGAGGGTCTTCAGATTGTTGGTCTGTGCATGCTTTCTCTGAACTCATGGCCACTTCTCATAGAGAAAGGTGGTCTTTTGATAGCGACTCGTTTGGCTTTAATGGTGAGAAAATTGCCAGATCTAGTAGTCAGATTTCAACTTCCTCAGTTGACTTGCAAACTTGCGGAGTTTGCTCGAAGCTGTTGACCGAGAAATCCTCGTGGAGTAGCCAAAGGATTATTGCTAACAATGAACTTTCCATTGCTGCTGTACTAACCTGTGGACATGTTTATCATGCCGATTGTTTGGAGAGTATGACACCTGAGATTTACAAGTACGACCCCGCTTGTCCTGTTTGTACCTTTGGGGAGAAGCATACTCAAAAGTTGTCCGAAAAGGCGCTTAAAGCTGAAATGGACTGGAAGAGTCTATATAAGAGACCCAAAAACTGTATTGCAGATAGTGATTTCGATGTCGATTTTGCTGCAAACGACCCTTTCAAAAATAATGCGCGTCTTGAAAGGGGATCGAAAATGTCTGCCAGTTCTAGCATGAGAAGCTCCTCAGGGAAGCCTTTCTTGAAACGGCACTTCTCCTTCGGCTCAAAGGGATCTTCTAGAGTGATGTCTGATAATCACTCCACAAGAAGGAAAGGATTCTTCTGGGCAAAGTCTAGCAAAGTATGA 1320 44.09 MGSACCVAARDKTIVSGSGSETLCRNIRYSPSWSFRWDNRGRVAGEETSINWFSDGVSRNDRVELKFESAYASEDGSPLEHLRRRAWQKSPPPEGTTNNLRTPSSGQSNSRNISTDVSIEQVKEAIESPTASYKSPAKLSLSLPSTSSLSTSPLSSQSYLPPTNSSLTRCSHRSPGHQLLRQVSDSRIRGLKSPSSYLASEDRPRLPSWSNESVRDSHGGSSDCWSVHAFSELMATSHRERWSFDSDSFGFNGEKIARSSSQISTSSVDLQTCGVCSKLLTEKSSWSSQRIIANNELSIAAVLTCGHVYHADCLESMTPEIYKYDPACPVCTFGEKHTQKLSEKALKAEMDWKSLYKRPKNCIADSDFDVDFAANDPFKNNARLERGSKMSASSSMRSSSGKPFLKRHFSFGSKGSSRVMSDNHSTRRKGFFWAKSSKV 439
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4390691 4393754 - CcPI632755_11g004260.1 Cco11g0426 191662

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g0426 439 PANTHER EXPRESSED PROTEIN 1 337 - -
Cco11g0426 439 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 253 333 IPR013083 -
Cco11g0426 439 MobiDBLite consensus disorder prediction 206 220 - -
Cco11g0426 439 MobiDBLite consensus disorder prediction 91 121 - -
Cco11g0426 439 ProSiteProfiles Zinc finger RING-type profile. 273 332 IPR001841 -
Cco11g0426 439 SMART ring_2 273 331 IPR001841 -
Cco11g0426 439 SUPERFAMILY RING/U-box 272 332 - -
Cco11g0426 439 MobiDBLite consensus disorder prediction 133 181 - -
Cco11g0426 439 MobiDBLite consensus disorder prediction 74 221 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g0426 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2685 Cco-Chr5:34822314 Cco11g0426 Cco-Chr11:4390691 6.90E-15 dispersed
Cco06g1349 Cco-Chr6:23957629 Cco11g0426 Cco-Chr11:4390691 5.50E-10 dispersed
Cco11g0426 Cco-Chr11:4390691 Cco02g0521 Cco-Chr2:4830709 1.00E-133 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g998 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone4ag1933 Cone7ag1845 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla11g00392 Cam11g0437 Cec11g0432 Cco11g0426 Clacu11g0560 Cmu11g0417 Cre11g0902 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001394 4 6 2 3 3 2 3 2 2 2 2 2 2 2 2 1 2 2 3 2 2 2 2 2 2 2 2 5 5 1 74