Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g0432 ATGGCGGCTGCAAATCTCTACTCTCCTTCACCTTCCCTTCCCAGCACCCTCAGACACTCTCTTAATTCAAACCCTTTTACCCGTATTCCTTTTCGACTTCACAAACCCTTCTCCAAAACTCCCCTCTCCCTAAAAGCTGTTCTTTCTCAAAACCCCTCTAAAACCCAGACCCAATTTCACCATTGTTTCTCCAAATCCTCAGATGGGTTTCTTTATTGCGAGGGAATTAAGGTGCAGGACATCATGGAATCTGTTGATAAGCGCCCTTTCTATCTTTACAGCAAACCCCAGATAACTAGAAATGTTGAGGCTTATAAAGAGGCTTTGGAAGGGCTGAATTCGATCATTGGTTATGCAATTAAGGCCAATAATAATTTGAAAGTGTTGGAGCATTTGAGGAAGTTGGGTTGTGGAGCTGTGCTTGTTAGTGGAAATGAGCTTCGCTTGGCTCTTCATGCTGGCTTTGACCCCACCAGATGTATTTTTAATGGGAATGGTAAACTTTTGGAGGATTTGGTTCTAGCTGCGGAACAAGGTGTTTTTGTCAATGTGGACAGTGAGTTTGACTTGGACAATATTGTGGCTGCTGCAAGAATCTCTGGAAAGAAAGTCAATGTTTTACTTCGTATTAATCCGGATGTGGACCCTCAGGTACATCCTTACGTTGCCACTGGTAATAAAAACTCCAAATTTGGTATTAGGAATGAAAAGTTGCAATGGTTTCTGGATGCTGTTAAGGCACATCCTGATGAGCTTAAGCTTGTTGGAGCCCATTGCCATCTTGGTTCCACCATCACCAAGGTGGACATATTCAGAGATGCTGCAGTATTAATGGTCAACTACATTGACCAGATCAGAGATCAAGGTTTTGAAGTTAATTACCTAAACATTGGAGGTGGTCTTGGTATAGATTATTATCATGCTGGTGCCATTCTTCCTACTCCTAGAGATCTCATTAATACGGTACGGGAGTTGGTCCTTTCACGAGATCTTAATCTAATCATTGAACCCGGGAGATCACTTATTGCCAATACTTGCTGTTTGGTTAATCGAGTGACAGGGGTCAAAACTAATGGGACTAAAAACTTTATTGTTATCGATGGAAGCATGGCTGAACTTATCCGCCCTAGTCTTTATGATGCTTATCAACACATAGAGTTGGTTGCTCCTTCGTCACCTGGTGCCGAGATCTCAACTTTTGATGTGGTTGGCCCTGTCTGCGAGTCTGCAGATTTCTTAGGGAAGCAAAGGGAACTCCCAACTCCAACCAAGGGGGCTGGCTTGGTTGTCCATGATGCTGGTGCTTACTGCATGAGTATGGCGTCTACTTACAATCTCAAGATGCGTCCTCCCGAGTTGACGAAGATGGATCAGTGTCCAAAATCAGGCATGGTGAGACATTTGACGATCACCTCCGGTTCTTCAAAAATCTTTGATTGGAAATTCGAGTTCATTCTTGTTGTCAGAATTATATCTGGTATGGCCTTTTCCCCCATTTTGTTAGGTAGGGAAGAATCTGGAGGTTTTGGCTGCATTGAATTTCAGGTTCTACCGCACTTCCGTGGAAGTTGGGTGTGCGGGGGAAAATCATTGAAGTCACCACTATTTAGGTTTGGTCAAGTTTTTAGTTCTAATATGGCTGGCGATCCTTTGACAAGCTCTAATGGCAATGCTAATGTAAATGCACCACCTGATCCTCGGAGGACTTATCAAGTTGTTGTAGCTGCTACTGAAAATATGGGCATTGGTAAGGATGGGAAACTACCATGGAGGTTGCCTTCTGATCTCAGCTTTTTTAGAAACATAACCACAACAACATCCGATCATGGGAAAAGGAATGCAGTTCTAATGGGTCGTAAAACATGGGAGAGTATTCCTGCTGAGCATCGGCCACTACCTGGTCGTCTGAATGTTGTTCTGACTCGCTCTGGGAGTTTTGACATTGCAACTGTTGAAAATGTTATTATATGTGGTAGTATAACGTCTGCTTTGGAATTATTAGCAGCTTCTCCTTACTGTTTGTCAATAGAGAAAGTGTTTGTTATAGGCGGTGGTGAGATATTAAGGGAAGCTCTGAATGCCCCTGAATGTGATGCTATCCACATTACTGAAATTGAGACAAATGTTGAATGTGACACCTTCATGCCAGCTATTGATAAGTCTATGTTTCAACCATGGTACTCATCCTTTCCAGTGGTGGAAAATAGTTTGCGATATTCGTTCACTAGTTATGTTCGTGTGAGGAGCTCAATTGAATCCCCCATTGATCAGAACAATGGTCTGGACTCTCATAAGAAACCTGATTTTTCTAACTTTGAGGCTAAGAAGTTCTCTTTCTTACCTAAGGAGATCTTTGAGAGGCATGAGGAGTACTTGTACCTAAACCTTGTTCAAGAAATCATCTCAGATGGTATTCCTAAGGATGATAGAACAGGGACAGGTACTTTGTCAAGATTTGGTTGCCAGATGCGGTACAACTTGCGCAAAACTTTTCCGCTGCTTACAACTAAGAAAGTATTTTGGCGGGGGGTTGTTGAAGAACTTCTTTGGTTCATCCGTGGTTCAACTAATGCAAAGGTTCTTCAGGAGAAAGGCATTCATATATGGGATGGCAATGCATCCAGAGATTACCTCGATAGTATTGGTTTAAGAGAAAGAGAGGAAGGCGACTTGGGACCTGTATATGGGTTCCAGTGGCGACACTTTGGTGCTAGGTATACGGACATGCATGCTGACTACACTGGTCAAGGATTTGATCAGTTGCTAGATGTTATTAACAAGATAAAAAATAATCCTGATGACCGGAGGATCATTCTTTCTGCATGGAATCCATCTGATCTCAAACTGATGGCACTTCCTCCTTGCCACATGTTCGCTCAGTTTTATGTAGCGAATGGGGAGTTATCCTGTCAAATGTATCAGCGCTCTGCTGACATGGGCCTTGGTGTTCCATTTAATATTGCATCATATGCGCTTCTGACTTGCATGATTGCTCATGTTTGTGGTCTTGCTCGAGGTGACTTCATTCACGTGATTGGAGATGCTCATATTTACCGTACTCATGTGAGGCCATTGCAGGAGCAGCTTCAGAAACTCCCCAAACCGTTCCCCATTTTGAAGATAAATCCCGAGAAGAAGGATATCGATTCTTTTGTGGCAGATGATTTTGAACTAACAGGTACAAGCATCACAGAGGCTTCGGTTGATATGAGTGCAGAAATTGTAGTGGCATCTGAGTCCCTCAACTGGGGTTCTTGTTTGGAGATGGAAGTTGGAATTGGATGCCTCTATTCCAAGGACTGGTTGCCTTGA 3312 43.03 MAAANLYSPSPSLPSTLRHSLNSNPFTRIPFRLHKPFSKTPLSLKAVLSQNPSKTQTQFHHCFSKSSDGFLYCEGIKVQDIMESVDKRPFYLYSKPQITRNVEAYKEALEGLNSIIGYAIKANNNLKVLEHLRKLGCGAVLVSGNELRLALHAGFDPTRCIFNGNGKLLEDLVLAAEQGVFVNVDSEFDLDNIVAAARISGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPDELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDQIRDQGFEVNYLNIGGGLGIDYYHAGAILPTPRDLINTVRELVLSRDLNLIIEPGRSLIANTCCLVNRVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVAPSSPGAEISTFDVVGPVCESADFLGKQRELPTPTKGAGLVVHDAGAYCMSMASTYNLKMRPPELTKMDQCPKSGMVRHLTITSGSSKIFDWKFEFILVVRIISGMAFSPILLGREESGGFGCIEFQVLPHFRGSWVCGGKSLKSPLFRFGQVFSSNMAGDPLTSSNGNANVNAPPDPRRTYQVVVAATENMGIGKDGKLPWRLPSDLSFFRNITTTTSDHGKRNAVLMGRKTWESIPAEHRPLPGRLNVVLTRSGSFDIATVENVIICGSITSALELLAASPYCLSIEKVFVIGGGEILREALNAPECDAIHITEIETNVECDTFMPAIDKSMFQPWYSSFPVVENSLRYSFTSYVRVRSSIESPIDQNNGLDSHKKPDFSNFEAKKFSFLPKEIFERHEEYLYLNLVQEIISDGIPKDDRTGTGTLSRFGCQMRYNLRKTFPLLTTKKVFWRGVVEELLWFIRGSTNAKVLQEKGIHIWDGNASRDYLDSIGLREREEGDLGPVYGFQWRHFGARYTDMHADYTGQGFDQLLDVINKIKNNPDDRRIILSAWNPSDLKLMALPPCHMFAQFYVANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCGLARGDFIHVIGDAHIYRTHVRPLQEQLQKLPKPFPILKINPEKKDIDSFVADDFELTGTSITEASVDMSAEIVVASESLNWGSCLEMEVGIGCLYSKDWLP 1103
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4531692 4547313 + CcPI632755_11g004320.1 Cco11g0432 191668

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g0432 1103 FunFam Diaminopimelate decarboxylase 332 469 - -
Cco11g0432 1103 CDD DHFR 573 745 IPR001796 GO:0004146(InterPro)|GO:0046654(InterPro)
Cco11g0432 1103 Gene3D Alanine racemase 95 340 IPR029066 -
Cco11g0432 1103 FunFam Bifunctional dihydrofolate reductase-thymidylate synthase 552 747 - -
Cco11g0432 1103 ProSitePatterns Thymidylate synthase active site. 935 963 IPR020940 GO:0004799(InterPro)|GO:0006231(InterPro)
Cco11g0432 1103 Hamap Thymidylate synthase [thyA]. 790 1076 IPR000398 GO:0004799(InterPro)|GO:0006231(InterPro)
Cco11g0432 1103 PRINTS Thymidylate synthase family signature 968 994 IPR000398 GO:0004799(InterPro)|GO:0006231(InterPro)
Cco11g0432 1103 PRINTS Thymidylate synthase family signature 831 852 IPR000398 GO:0004799(InterPro)|GO:0006231(InterPro)
Cco11g0432 1103 PRINTS Thymidylate synthase family signature 950 965 IPR000398 GO:0004799(InterPro)|GO:0006231(InterPro)
Cco11g0432 1103 PRINTS Thymidylate synthase family signature 924 943 IPR000398 GO:0004799(InterPro)|GO:0006231(InterPro)
Cco11g0432 1103 PRINTS Thymidylate synthase family signature 1006 1023 IPR000398 GO:0004799(InterPro)|GO:0006231(InterPro)
Cco11g0432 1103 ProSiteProfiles Dihydrofolate reductase (DHFR) domain profile. 569 746 IPR001796 GO:0004146(InterPro)|GO:0046654(InterPro)
Cco11g0432 1103 CDD TS_Pyrimidine_HMase 793 1026 IPR023451 -
Cco11g0432 1103 Hamap Diaminopimelate decarboxylase [lysA]. 75 482 IPR002986 GO:0008836(InterPro)|GO:0009089(InterPro)
Cco11g0432 1103 FunFam Diaminopimelate decarboxylase 95 340 - -
Cco11g0432 1103 SUPERFAMILY PLP-binding barrel 88 344 IPR029066 -
Cco11g0432 1103 Gene3D Dihydrofolate Reductase, subunit A 553 748 IPR024072 -
Cco11g0432 1103 NCBIfam diaminopimelate decarboxylase 66 454 IPR002986 GO:0008836(InterPro)|GO:0009089(InterPro)
Cco11g0432 1103 ProSitePatterns Dihydrofolate reductase (DHFR) domain signature. 581 603 IPR017925 GO:0004146(InterPro)
Cco11g0432 1103 SUPERFAMILY Dihydrofolate reductase-like 567 746 IPR024072 -
Cco11g0432 1103 PANTHER THYMIDYLATE SYNTHASE 1 592 1064 IPR045097 GO:0004146(PANTHER)|GO:0004799(PANTHER)|GO:0005739(PANTHER)|GO:0005829(PANTHER)|GO:0006231(PANTHER)|GO:0016741(InterPro)
Cco11g0432 1103 ProSitePatterns Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. 118 136 IPR022653 -
Cco11g0432 1103 SUPERFAMILY Alanine racemase C-terminal domain-like 319 457 IPR009006 GO:0003824(InterPro)
Cco11g0432 1103 Pfam Pyridoxal-dependent decarboxylase, C-terminal sheet domain 344 434 IPR022643 GO:0003824(InterPro)
Cco11g0432 1103 Gene3D Lyase, Ornithine Decarboxylase; Chain A, domain 1 76 454 IPR009006 GO:0003824(InterPro)
Cco11g0432 1103 CDD PLPDE_III_DapDC 89 453 IPR002986 GO:0008836(InterPro)|GO:0009089(InterPro)
Cco11g0432 1103 NCBIfam thymidylate synthase 793 1062 IPR000398 GO:0004799(InterPro)|GO:0006231(InterPro)
Cco11g0432 1103 FunFam Possible thymidylate synthase 784 1074 - -
Cco11g0432 1103 Pfam Thymidylate synthase 793 1060 IPR023451 -
Cco11g0432 1103 ProSitePatterns Orn/DAP/Arg decarboxylases family 2 signature 2. 289 302 IPR022657 -
Cco11g0432 1103 Pfam Dihydrofolate reductase 571 746 IPR001796 GO:0004146(InterPro)|GO:0046654(InterPro)
Cco11g0432 1103 SUPERFAMILY Thymidylate synthase/dCMP hydroxymethylase 751 1061 IPR036926 -
Cco11g0432 1103 Pfam Pyridoxal-dependent decarboxylase, pyridoxal binding domain 97 343 IPR022644 GO:0003824(InterPro)
Cco11g0432 1103 Gene3D Thymidylate synthase/dCMP hydroxymethylase domain 782 1071 IPR036926 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g0432 K13998 - - csv:101208660 1002.28
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g987 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone20ag0127 . . . . . . . Bda01g01504 Bpe02g01702 . Bma01g00752 . . . . . . . . . . . . . . . . . Cla11g00400 Cam11g0445 Cec11g0441 Cco11g0432 Clacu11g0569 Cmu11g0425 Cre11g0909 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004370 2 2 3 2 2 1 1 1 1 1 1 1 2 1 1 1 1 4 2 1 1 1 1 1 1 1 1 2 1 2 43