Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g0441 ATGATCATGCACTACGATGTTAGTGAATATTGTTTGGTAAAACCACCACTTACCGGCCGTGGAGAAAACGAAACAGCAACTCCAAATTCCAAACCCTCAGATTGTTCTTCGTCGCCGGTGGAAGCTGCTACATTTCTCCGATTCAACTCGAAAATGGAGGAGAAAAGCAAGATTCTGATCATTGGAGCAACAGGTTACCTAGGGTTTCATTTGGCTCAAGCCAGCTGCAATTCTTCTCACCCTACATTTGCTCTCATCAGAGATTCTACTTTCTCTTCACCTCACAAACTAGACAAGCTCCGAGCTCTTTCCGATGCCGGAGTTAAATTCCTCAAGGGTTCTCTAGAAGACGAAGCTAGCCTTGTGGAAGCTATTAATGAAGTGGATGTGGTCATTTGTGCTGTTTCCTCTAAACAGGTGTCGGAACAGAAGCCTCTGATTCGAATCATAAAACAAACTGGATCCATTAAGAGGTTTATTCCATCGGAATTTGGACTTGATCCGGATAAGGTTCAAATATTAAATATGGATTACGACTTCTATTCCCGCAAAGCTGAAATTCGTCGGCTAATTGAAGCTGAAGGCATTCCATATACCATAGTTTCTTGCAATTTTTTTACAAGTTATTTACTTCCTTCCCTTGTACAACCAGGCATGAAAAGCCCTCCAAGGGATAAGGTGACAATATTTGGTGATGGAAATACCAAAGGTGTATTTGTGAAGGTCAATGATGTTGCTGCCTTAACAATTAGTGCTGTGGATGATCCACGCACATTGAACAAGGTACTTTATTTAAGGCCCGAAGGAAATGTTTATTCCTTGAATGAACTGGTTGAGATTTGGGAGAGCAAAATTGGGAAGAAGCTTGAGAAGAATTATGTATCAGAAGAGGAGCTGCTAAAGAAAATTGAAGAGACTCCTTATCCTGACAACATGGCTTTCATTTTCATATATTCTGCATTTATAAAGGGAGATCAAACATACTTCGATATTGAGGCATCAAATGGCGTTGATGGTTCAAAATTATATCCACAACTCAAGCATACCACGATTACGTTTTCTTCTCTCTTTCTGCAGCTCGACGGTAGTCCTCCGATCAGCCATTTCTTTACCGGAAACCTTACTCCAATGGCTCAGAATCTCAAGGTTCTTGTCATCGGAGGAACTGGCTACATCGGAAAATTCATAGTACAAGCCAGCGCCAAAGCTGGTCATCCTACCTATGCATTGATCCGCAAGTCTTCGCTCGCAAACCCCGCCAAGTATCGAATCATCAATCATTTCAAAAGCTTAGGGGTCAATTTTCTCTTCGGCGATCTCTTTGACAATGAAAGTTTGGTTAAGGCGATTAAGCAGGTTGATGTGGTGATATCAACCCTCGGTGGTCATATGGTTCCCCATCAACATAAGATCCTATCAGCTATCAAACAAGCTGGCAATGTGAAGAGATTCTTTCCTTCTGAGTTCGGCAACGATGCAGATCATATCGATGCAGTGGAGCCAGCGAAATCAATGTATGCTGCAAAGGCTGAATTTCGTAGAGCTGTTGAGGCTGAGGGAATCCCACATACATTTGTCGTATGCAATTTCTTCGACGGTTACTTTCTAAGCAACTTGTCTCAGCCAGATGCAAGCGTCCCACCTAGAGACAAAGTCATAATCTTAGGGGATGGAACTCCCAAAGTGATTTACAACAAAGAAGAAGACGTTGGGACGTACACAATCCGAGCGATCGACGATCCAAGGACCCTCAACAAGATCATGTACCTTAGACCCCCAGCCAACATCTACTCAACCAATGATCTCGTCTCGCTGTGGGAGAGAAAAATTGGCAAGAGTCTTAAAAGGATCTACGTCCCAGAGGAGGAAGTGTTGAAGAACATCAAAGAGACTTCATATCCACTTAATATAGAATTGGCACTCTGTCACACTGCTCAAGTGAAAGGATCTCAAACTAATTTTGATATTGAGCCATCTTTTGGAGTGGAAGCTTCAGCTTTGTACCCAGATGTTCGATATACAACTGTGGAAGAATACCTCGACCAGTTTGTCTGA 2055 42.53 MIMHYDVSEYCLVKPPLTGRGENETATPNSKPSDCSSSPVEAATFLRFNSKMEEKSKILIIGATGYLGFHLAQASCNSSHPTFALIRDSTFSSPHKLDKLRALSDAGVKFLKGSLEDEASLVEAINEVDVVICAVSSKQVSEQKPLIRIIKQTGSIKRFIPSEFGLDPDKVQILNMDYDFYSRKAEIRRLIEAEGIPYTIVSCNFFTSYLLPSLVQPGMKSPPRDKVTIFGDGNTKGVFVKVNDVAALTISAVDDPRTLNKVLYLRPEGNVYSLNELVEIWESKIGKKLEKNYVSEEELLKKIEETPYPDNMAFIFIYSAFIKGDQTYFDIEASNGVDGSKLYPQLKHTTITFSSLFLQLDGSPPISHFFTGNLTPMAQNLKVLVIGGTGYIGKFIVQASAKAGHPTYALIRKSSLANPAKYRIINHFKSLGVNFLFGDLFDNESLVKAIKQVDVVISTLGGHMVPHQHKILSAIKQAGNVKRFFPSEFGNDADHIDAVEPAKSMYAAKAEFRRAVEAEGIPHTFVVCNFFDGYFLSNLSQPDASVPPRDKVIILGDGTPKVIYNKEEDVGTYTIRAIDDPRTLNKIMYLRPPANIYSTNDLVSLWERKIGKSLKRIYVPEEEVLKNIKETSYPLNIELALCHTAQVKGSQTNFDIEPSFGVEASALYPDVRYTTVEEYLDQFV 684
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4632100 4640273 - CcPI632755_11g004410.1 Cco11g0441 191677

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g0441 684 Gene3D - 382 670 - -
Cco11g0441 684 PANTHER PINORESINOL REDUCTASE-RELATED 382 684 IPR050608 -
Cco11g0441 684 CDD PCBER_SDR_a 57 351 IPR045312 GO:0016491(InterPro)
Cco11g0441 684 Gene3D - 57 343 - -
Cco11g0441 684 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 382 643 IPR036291 -
Cco11g0441 684 Coils Coil 286 306 - -
Cco11g0441 684 Gene3D - 203 351 - -
Cco11g0441 684 Pfam NmrA-like family 58 289 IPR008030 -
Cco11g0441 684 Pfam NmrA-like family 383 614 IPR008030 -
Cco11g0441 684 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 54 327 IPR036291 -
Cco11g0441 684 CDD PCBER_SDR_a 382 679 IPR045312 GO:0016491(InterPro)
Cco11g0441 684 Gene3D - 530 680 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g0441 K23050 - - csv:101209800 590.112
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco10g0535 Cco-Chr10:6379888 Cco11g0441 Cco-Chr11:4632100 3.80E-119 dispersed
Cco11g0440 Cco-Chr11:4624500 Cco11g0441 Cco-Chr11:4632100 2.90E-137 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g963 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo17g00792 . . . . . . Bma05g00127 . . . . . . . . . . . . . . . . Cla11g00408 Cam11g0454 Cec11g0450 Cco11g0441 Clacu11g0579 Cmu11g0437 Cre11g0918 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000111 5 10 6 7 3 10 5 11 9 7 10 9 5 7 11 5 9 5 6 10 8 9 7 8 12 9 8 7 9 7 234