Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g0442 ATGGCTCCTGCAGATATGACAACTGCAAGGCTGATAAGAGTGGATCAATCAGGAAATGGAGATTTTAAGAAAATTCAAGAAGCAATTGATTCTGTTCCATCTCATAACAATGAACTCGTTTTCATTTGGGTTAAGCCTGGAACTTACAGAGAGAAAATAGTGGTACCGAAGGAGAAGCCGTTCATAACAATCAGCGGCAATAAGGCCTCCGACACCATAATCACAGGGAACCAAGGAAGAGATTTACTTCAATCTCCGGTGGTCTCGGTCTTTGCCTCGGACTTTATTGGTCGTTTCCTGACCATCCAAAACACCTTTGGCACTACCGGCATTGCGGTGGCGCTGAGGGTCTCGGCCGATAGAGCCGCCTTCTATGGCTGCCGGATCATCTCCTTTCAAGATACCCTTTTGGACGACGTTGGAAGACATTACTTCAAGAGCTGTTACATTGAAGGAGCCACCGATTTCATATGCGGAAGTTCCACTTCTCTCTATGAGAAGTGTCATTTGCATTCGACGTCGGATAGAGGTGGGGCGATGACGGCGCAACACCGGAACACGGCGGAGGAGAACACCGGGTTCGTGTTCTTGGGGGGAAAAATAACAGGAAGTGGCTCCACTTTTCTTGGAAGGCCATGGGGAGATTTTTCTAGGGTTATGTTTGGCTACACTTACATGTCCAATGTTGTTGAACCACAGGGCTGGAATGATTGGGGAGATCAAAGCAAGCAAAGAACAGTGTCGTATGGAGAATTCAAATGCTATGGGCCAGGAGCAAACAGAGCTAGACGAGTGGGTTGGTCACACAGCCTATCCACGGATGAGGCTGCAAAATTCTTCACCAAAGACATCATTGGCGGCCGAGCTTGGCTTCGACCTTCACCATCTCATTTCAAAAGGAGCTAG 906 47.9 MAPADMTTARLIRVDQSGNGDFKKIQEAIDSVPSHNNELVFIWVKPGTYREKIVVPKEKPFITISGNKASDTIITGNQGRDLLQSPVVSVFASDFIGRFLTIQNTFGTTGIAVALRVSADRAAFYGCRIISFQDTLLDDVGRHYFKSCYIEGATDFICGSSTSLYEKCHLHSTSDRGGAMTAQHRNTAEENTGFVFLGGKITGSGSTFLGRPWGDFSRVMFGYTYMSNVVEPQGWNDWGDQSKQRTVSYGEFKCYGPGANRARRVGWSHSLSTDEAAKFFTKDIIGGRAWLRPSPSHFKRS 301
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4642821 4648253 - CcPI632755_11g004420.1 Cco11g0442 191678

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g0442 301 Gene3D - 6 300 IPR012334 -
Cco11g0442 301 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 10 292 - GO:0030599(PANTHER)|GO:0045490(PANTHER)|GO:0052689(PANTHER)
Cco11g0442 301 Pfam Pectinesterase 14 287 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Cco11g0442 301 FunFam Pectinesterase 6 295 - -
Cco11g0442 301 SUPERFAMILY Pectin lyase-like 7 298 IPR011050 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g0442 K01051 - - csv:101215864 551.977
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco09g2316 Cco-Chr9:37375370 Cco11g0442 Cco-Chr11:4642821 4.20E-64 dispersed
Cco10g1958 Cco-Chr10:33151890 Cco11g0442 Cco-Chr11:4642821 3.10E-36 dispersed
Cco01g0429 Cco-Chr1:4270606 Cco11g0442 Cco-Chr11:4642821 1.40E-66 transposed
Cco05g0777 Cco-Chr5:6473703 Cco11g0442 Cco-Chr11:4642821 3.50E-57 transposed
Cco09g0473 Cco-Chr9:4157054 Cco11g0442 Cco-Chr11:4642821 9.80E-69 transposed
Cco09g2007 Cco-Chr9:34267550 Cco11g0442 Cco-Chr11:4642821 1.80E-63 transposed
Cco11g0442 Cco-Chr11:4642821 Cco08g1677 Cco-Chr8:28212450 2.60E-109 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g961 . . . . . . . . . Cmo12g00413 . . . Car12g00436 . . Cpe07g00413 Bhi04g00183 . . . Hepe10g0628 . . Cla08g01478 Cam08g1965 Cec08g1540 Cco08g1677 Clacu08g1655 . Cre08g1439 . . Cone17ag1350 Cone20ag0134 . . . Cme03g01944 . . . . . . . . . . . Cma12g00463 . . . . . . . . . . . . Cla11g00409 Cam11g0456 Cec11g0451 Cco11g0442 Clacu11g0580 Cmu11g0438 Cre11g0920 . Csa02g02065 Chy03g01447 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003216 0 2 0 0 0 2 2 2 2 2 1 2 1 2 2 2 2 2 2 2 2 2 2 2 3 1 2 3 2 2 51