Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g0449 ATGTTGAAGTCGGAGATGACGCCGTCGGCTCGACTCAAACGGCAGCGACCCCATGGCAACTGCCGGAGCTTGTCTTCCGTCTCGACTCCAGCAAGTCGGGTCAACCATTTTGAGGATCTAGTTGCACCTGGAGGTTGGCCCGAGTTGGCTAAGTACGAGATCTCCTCTTCGAAGTTTCGAACCAATCAGACGTGTTCACCACTAATAGAGGCGAACTCCGTGGTGGAGGGAGAGATTGCGAAAAAGAGAAAAGGGAAGAAGAAGGAAATGAAATGGAAAGGGAGAGATGATAATAATAATGTTGAATGGGAGAATGGAAGAGAGAAGAAAATGAAAGGAAAGGTTGAAGAAGATGAAGATCATGAAGATGATGAATCAAAGATTACGGAGGAAAGAGAGAGATGGAAATGCAATTCAAAAGCTTCAAAAGAAGTTCAAAAATCGGATTATGTTCATGTGAGAGCACGTCGAGGCCAAGCCACTGATAGCCATAGTCTTGCTGAAAGAGCAAGGAGAGAGAAGATAAGTGAGAGAATGAAGTATTTGCAGAATTTGGTCCCTGGGTGTAACAAAATTGCTGGAAAAGCTGGAATGCTTGATGAAATTATTAATTATGTTCAATCTCTCCAACAACAAGTTGAGTTCTTATCTATGAAGGTGGCTGCTCTCAATCACAGAGTTGATTTCATCAATGTAGATGACTTCTTGGCCAAACAGGTGTTTCCGACGTTAACGACCGATTGTTCATCCTACTTTAATCAACTTGGAAAGAGCTCAACCTCTCTAACAGTCCCACAAACTCCATTGATCAATAACAACTTGTCTTCAATTGCTCATTTTGAACTGTCTTCAACTTGGGGAGGTGATTTACAAAGGTTTGAAGAAGGAGGGCCTCCATTGTTGTCGCCATCAAGCTTTTTATCGCAGCAATGTTCAGGCATTGAAGATGAAAATGAAACATTATTTTTGGACCACAAACTTGTTCCATTTTAA 993 42.2 MLKSEMTPSARLKRQRPHGNCRSLSSVSTPASRVNHFEDLVAPGGWPELAKYEISSSKFRTNQTCSPLIEANSVVEGEIAKKRKGKKKEMKWKGRDDNNNVEWENGREKKMKGKVEEDEDHEDDESKITEERERWKCNSKASKEVQKSDYVHVRARRGQATDSHSLAERARREKISERMKYLQNLVPGCNKIAGKAGMLDEIINYVQSLQQQVEFLSMKVAALNHRVDFINVDDFLAKQVFPTLTTDCSSYFNQLGKSSTSLTVPQTPLINNNLSSIAHFELSSTWGGDLQRFEEGGPPLLSPSSFLSQQCSGIEDENETLFLDHKLVPF 330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4696714 4700917 - CcPI632755_11g004490.1 Cco11g0449 191685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g0449 330 SMART finulus 165 215 IPR011598 GO:0046983(InterPro)
Cco11g0449 330 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 159 209 IPR011598 GO:0046983(InterPro)
Cco11g0449 330 MobiDBLite consensus disorder prediction 1 32 - -
Cco11g0449 330 MobiDBLite consensus disorder prediction 90 117 - -
Cco11g0449 330 FunFam Basic helix-loop-helix transcription factor 156 228 - -
Cco11g0449 330 MobiDBLite consensus disorder prediction 84 132 - -
Cco11g0449 330 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 157 229 IPR036638 GO:0046983(InterPro)
Cco11g0449 330 CDD bHLH_AtBPE_like 149 235 - -
Cco11g0449 330 Coils Coil 206 226 - -
Cco11g0449 330 Gene3D - 156 231 IPR036638 GO:0046983(InterPro)
Cco11g0449 330 Pfam Helix-loop-helix DNA-binding domain 163 210 IPR011598 GO:0046983(InterPro)
Cco11g0449 330 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 80 266 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco09g0834 Cco-Chr9:7790126 Cco11g0449 Cco-Chr11:4696714 3.50E-34 dispersed
Cco10g1708 Cco-Chr10:30630282 Cco11g0449 Cco-Chr11:4696714 2.40E-33 dispersed
Cco11g0449 Cco-Chr11:4696714 Cco06g1788 Cco-Chr6:28288175 1.20E-06 dispersed
Cco11g0449 Cco-Chr11:4696714 Cco11g1711 Cco-Chr11:29928241 6.20E-11 wgd
Cco11g0449 Cco-Chr11:4696714 Cco02g0529 Cco-Chr2:4951182 1.90E-44 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60240 PF00010 HLH 2.60E-06 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g0449 - - - 0.0