Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g0459 ATGGAGAGGCAGAGCATGAATATAGCGAAACAAGAAGGAAGGCAATGGCAGAATAATCGGAGAAGAAGAGTTTCCCAACGCCGCCGTTGTCCTTTTTGGAGCACCGGTCAGAGTTTCTCCGGCACTATTCAGACCACTACTCCTTTGCCGGAAACTCTACTAATGTCTTCTTCATCCGATCCTCCTTCCCCTTCTTCTTCTGATTCTGATCCCTCTAATCCCCCTCCTTCTCCACCTCCTTCCACTGCGCCGCCTCCCGATGCTTCTCCGCCTCCCCCGGATTCCTCCTCCTCCTCCTCTCCTCCTCCGCCGGATTCTTCTCCTCCTCCTCCACCCGATGCTTCTTCTCCACCTCCGCCAGATGCATCCCCGCCGCCGCCTAACGACTCCTCCCCGCCTCCTGGTGATTCCTCTTCTTCACCGCCATCGCCGAAGGATTCCAACTCTAATTCTCCTCCGTCGCCGCCGCCGCCGCCGCCTCCACCACCGCCGCCGCCGCCTCCTCCGCCGCGTGGATCCTCAAGGCATTCTCCTCCGCCTCCGAGATCGATCGACTCAGGATCCTCAGACTCCTCGTCCGGTGGTTCCGCTCCCCAGGCGGTGCCGATCATTGTAGGAGTGGCGGTGGCGGCAGGGTTTTTGCTTTTCGCCATGGCCTTGATATTCTTCGCTTGCACCCGAAAGAAAAAGAAGCAAAATAGTAATTCCATGTATTTCGATGAACAGTCCGGTCCGAAAGGTGGGGGTCCATATTACAACGGAAGGAATCACAACTGGAACAACCCGAGCGAACATTTCGTGAACATGGCGCCAATCAGCGGCGGAACCCAAGGAGGAGGGTGGCCATCGCCGCCGCCGCCTCCTCCGCCGGGATTATTGAGCAGTGATATGAGCTCGAATTTCTCAGGGCCACATGGGCCACCGTTGCCGCCGCCGCACCCATCGGTGGCTCTGGGGTTCAATAAGAGCACTTTCACGTACGACGAGCTGATGGCGGCGACCTCGGGATTCTCTCCGGCTAATCTGTTGGGGCAAGGAGGATTCGGGTATGTTCATAAAGGACTACTGCCCAACGGCAAGGAAATTGCAGTGAAAAGCCTGAAAACGGGAAGCGGGCAAGGAGATCGAGAATTCGCGGCCGAGGTGGAGATCATCAGCCGCGTCCACCACCGCCATTTGGTGTCCCTTGTCGGGTATTGTATCGCCGGCGACCGGAAGATGTTGGTTTACGAATTTGTCCCCAATAACAACCTCGAATTCCACCTTCACGGCAAGGGGCGGCCACCATTGGACTGGTCGACGAGAATGAAGATCGCATTGGGCTCAGCCAAGGGCCTAGCCTATCTCCACGAAGACTGTCATCCTCGCATTATCCACAGAGATATTAAGACTGCCAATATTCTTATAGACATGAGTTTCGAGGCTAAGGTGGCTGATTTTGGATTGGCGAAGCTCAACCAAGACAATTACACTCATGTATCGACTCGCGTCATGGGCACATTTGGATATTTGGCTCCGGAGTATGCATCAAGTGGGAAGCTAACGGAGAAATCAGATATATTCTCATTTGGAGTAATGCTTTTGGAGTTGATTACCGGAAGACGACCGGTGGACACGGCCGGGGAAATGGAAGACAGCTTAGTGGACTGGTCAAGGCCTCTTTGTGTGAAAGCAATGAGTGATGGAAACTATGATGAGTTGGCTGATTCACGGTTAGAGAAGAACTATGATGTCCAAGAAATGGCTTGCATGGTGGCTTGCGCCGCCGCTTGCATTCGCCATTCGGCTCGGCGCCGTCCCAAAATGAGCCAGGTGGTACGAGCATTGGAAGGCGATGTGTCGCTGGATGACTTGAACGATGGAGTAAAGCCAGGGCAAAGCTCATACTTCGGGTCCGGCACGTCCTCGGAGTACGACGCAAGCTCCTATAGTGCCGACATGAAGAGGTTCCGAAAGGTGGCGTTGGACAGCCGCGAGTACGCAAGCAGCGATTATGGCGGCACTAGCGAGTACGGCCTAAACCCTTCCTCAACAAGCAGCGAAATGAGTCGGAAGCCTAGTCGTTTATCCTCCCCCGATGCACCCCCCTCACATTCTTAA 2100 54.95 MERQSMNIAKQEGRQWQNNRRRRVSQRRRCPFWSTGQSFSGTIQTTTPLPETLLMSSSSDPPSPSSSDSDPSNPPPSPPPSTAPPPDASPPPPDSSSSSSPPPPDSSPPPPPDASSPPPPDASPPPPNDSSPPPGDSSSSPPSPKDSNSNSPPSPPPPPPPPPPPPPPPPRGSSRHSPPPPRSIDSGSSDSSSGGSAPQAVPIIVGVAVAAGFLLFAMALIFFACTRKKKKQNSNSMYFDEQSGPKGGGPYYNGRNHNWNNPSEHFVNMAPISGGTQGGGWPSPPPPPPPGLLSSDMSSNFSGPHGPPLPPPHPSVALGFNKSTFTYDELMAATSGFSPANLLGQGGFGYVHKGLLPNGKEIAVKSLKTGSGQGDREFAAEVEIISRVHHRHLVSLVGYCIAGDRKMLVYEFVPNNNLEFHLHGKGRPPLDWSTRMKIALGSAKGLAYLHEDCHPRIIHRDIKTANILIDMSFEAKVADFGLAKLNQDNYTHVSTRVMGTFGYLAPEYASSGKLTEKSDIFSFGVMLLELITGRRPVDTAGEMEDSLVDWSRPLCVKAMSDGNYDELADSRLEKNYDVQEMACMVACAAACIRHSARRRPKMSQVVRALEGDVSLDDLNDGVKPGQSSYFGSGTSSEYDASSYSADMKRFRKVALDSREYASSDYGGTSEYGLNPSSTSSEMSRKPSRLSSPDAPPSHS 699
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4829412 4835756 - CcPI632755_11g004590.1 Cco11g0459 191695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g0459 699 SMART serkin_6 337 609 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco11g0459 699 MobiDBLite consensus disorder prediction 625 641 - -
Cco11g0459 699 MobiDBLite consensus disorder prediction 662 699 - -
Cco11g0459 699 ProSitePatterns Protein kinases ATP-binding region signature. 343 365 IPR017441 GO:0005524(InterPro)
Cco11g0459 699 Gene3D Phosphorylase Kinase; domain 1 314 412 - -
Cco11g0459 699 Pfam Protein tyrosine and serine/threonine kinase 342 609 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco11g0459 699 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 169 653 IPR047117 -
Cco11g0459 699 ProSitePatterns Serine/Threonine protein kinases active-site signature. 457 469 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco11g0459 699 ProSiteProfiles Protein kinase domain profile. 337 615 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco11g0459 699 FunFam proline-rich receptor-like protein kinase PERK1 315 412 - -
Cco11g0459 699 Gene3D Transferase(Phosphotransferase) domain 1 413 620 - -
Cco11g0459 699 MobiDBLite consensus disorder prediction 1 198 - -
Cco11g0459 699 MobiDBLite consensus disorder prediction 67 177 - -
Cco11g0459 699 MobiDBLite consensus disorder prediction 615 641 - -
Cco11g0459 699 FunFam Proline-rich receptor-like protein kinase PERK1 413 620 - -
Cco11g0459 699 MobiDBLite consensus disorder prediction 30 66 - -
Cco11g0459 699 MobiDBLite consensus disorder prediction 231 312 - -
Cco11g0459 699 MobiDBLite consensus disorder prediction 179 198 - -
Cco11g0459 699 SUPERFAMILY Protein kinase-like (PK-like) 312 609 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g0955 Cco-Chr6:12836502 Cco11g0459 Cco-Chr11:4829412 4.50E-159 dispersed
Cco07g0981 Cco-Chr7:22619000 Cco11g0459 Cco-Chr11:4829412 1.00E-168 dispersed
Cco11g0264 Cco-Chr11:2575393 Cco11g0459 Cco-Chr11:4829412 1.00E-161 dispersed
Cco11g0459 Cco-Chr11:4829412 Cco11g0541 Cco-Chr11:5714802 4.40E-123 dispersed
Cco11g0459 Cco-Chr11:4829412 Cco11g1720 Cco-Chr11:30038894 4.30E-59 wgd
Cco11g0459 Cco-Chr11:4829412 Cco05g2185 Cco-Chr5:30650028 4.90E-64 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87223 PF07714 PK_Tyr_Ser-Thr 2.60E-46 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g0459 - - - 0.0