Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco11g0459 | ATGGAGAGGCAGAGCATGAATATAGCGAAACAAGAAGGAAGGCAATGGCAGAATAATCGGAGAAGAAGAGTTTCCCAACGCCGCCGTTGTCCTTTTTGGAGCACCGGTCAGAGTTTCTCCGGCACTATTCAGACCACTACTCCTTTGCCGGAAACTCTACTAATGTCTTCTTCATCCGATCCTCCTTCCCCTTCTTCTTCTGATTCTGATCCCTCTAATCCCCCTCCTTCTCCACCTCCTTCCACTGCGCCGCCTCCCGATGCTTCTCCGCCTCCCCCGGATTCCTCCTCCTCCTCCTCTCCTCCTCCGCCGGATTCTTCTCCTCCTCCTCCACCCGATGCTTCTTCTCCACCTCCGCCAGATGCATCCCCGCCGCCGCCTAACGACTCCTCCCCGCCTCCTGGTGATTCCTCTTCTTCACCGCCATCGCCGAAGGATTCCAACTCTAATTCTCCTCCGTCGCCGCCGCCGCCGCCGCCTCCACCACCGCCGCCGCCGCCTCCTCCGCCGCGTGGATCCTCAAGGCATTCTCCTCCGCCTCCGAGATCGATCGACTCAGGATCCTCAGACTCCTCGTCCGGTGGTTCCGCTCCCCAGGCGGTGCCGATCATTGTAGGAGTGGCGGTGGCGGCAGGGTTTTTGCTTTTCGCCATGGCCTTGATATTCTTCGCTTGCACCCGAAAGAAAAAGAAGCAAAATAGTAATTCCATGTATTTCGATGAACAGTCCGGTCCGAAAGGTGGGGGTCCATATTACAACGGAAGGAATCACAACTGGAACAACCCGAGCGAACATTTCGTGAACATGGCGCCAATCAGCGGCGGAACCCAAGGAGGAGGGTGGCCATCGCCGCCGCCGCCTCCTCCGCCGGGATTATTGAGCAGTGATATGAGCTCGAATTTCTCAGGGCCACATGGGCCACCGTTGCCGCCGCCGCACCCATCGGTGGCTCTGGGGTTCAATAAGAGCACTTTCACGTACGACGAGCTGATGGCGGCGACCTCGGGATTCTCTCCGGCTAATCTGTTGGGGCAAGGAGGATTCGGGTATGTTCATAAAGGACTACTGCCCAACGGCAAGGAAATTGCAGTGAAAAGCCTGAAAACGGGAAGCGGGCAAGGAGATCGAGAATTCGCGGCCGAGGTGGAGATCATCAGCCGCGTCCACCACCGCCATTTGGTGTCCCTTGTCGGGTATTGTATCGCCGGCGACCGGAAGATGTTGGTTTACGAATTTGTCCCCAATAACAACCTCGAATTCCACCTTCACGGCAAGGGGCGGCCACCATTGGACTGGTCGACGAGAATGAAGATCGCATTGGGCTCAGCCAAGGGCCTAGCCTATCTCCACGAAGACTGTCATCCTCGCATTATCCACAGAGATATTAAGACTGCCAATATTCTTATAGACATGAGTTTCGAGGCTAAGGTGGCTGATTTTGGATTGGCGAAGCTCAACCAAGACAATTACACTCATGTATCGACTCGCGTCATGGGCACATTTGGATATTTGGCTCCGGAGTATGCATCAAGTGGGAAGCTAACGGAGAAATCAGATATATTCTCATTTGGAGTAATGCTTTTGGAGTTGATTACCGGAAGACGACCGGTGGACACGGCCGGGGAAATGGAAGACAGCTTAGTGGACTGGTCAAGGCCTCTTTGTGTGAAAGCAATGAGTGATGGAAACTATGATGAGTTGGCTGATTCACGGTTAGAGAAGAACTATGATGTCCAAGAAATGGCTTGCATGGTGGCTTGCGCCGCCGCTTGCATTCGCCATTCGGCTCGGCGCCGTCCCAAAATGAGCCAGGTGGTACGAGCATTGGAAGGCGATGTGTCGCTGGATGACTTGAACGATGGAGTAAAGCCAGGGCAAAGCTCATACTTCGGGTCCGGCACGTCCTCGGAGTACGACGCAAGCTCCTATAGTGCCGACATGAAGAGGTTCCGAAAGGTGGCGTTGGACAGCCGCGAGTACGCAAGCAGCGATTATGGCGGCACTAGCGAGTACGGCCTAAACCCTTCCTCAACAAGCAGCGAAATGAGTCGGAAGCCTAGTCGTTTATCCTCCCCCGATGCACCCCCCTCACATTCTTAA | 2100 | 54.95 | MERQSMNIAKQEGRQWQNNRRRRVSQRRRCPFWSTGQSFSGTIQTTTPLPETLLMSSSSDPPSPSSSDSDPSNPPPSPPPSTAPPPDASPPPPDSSSSSSPPPPDSSPPPPPDASSPPPPDASPPPPNDSSPPPGDSSSSPPSPKDSNSNSPPSPPPPPPPPPPPPPPPPRGSSRHSPPPPRSIDSGSSDSSSGGSAPQAVPIIVGVAVAAGFLLFAMALIFFACTRKKKKQNSNSMYFDEQSGPKGGGPYYNGRNHNWNNPSEHFVNMAPISGGTQGGGWPSPPPPPPPGLLSSDMSSNFSGPHGPPLPPPHPSVALGFNKSTFTYDELMAATSGFSPANLLGQGGFGYVHKGLLPNGKEIAVKSLKTGSGQGDREFAAEVEIISRVHHRHLVSLVGYCIAGDRKMLVYEFVPNNNLEFHLHGKGRPPLDWSTRMKIALGSAKGLAYLHEDCHPRIIHRDIKTANILIDMSFEAKVADFGLAKLNQDNYTHVSTRVMGTFGYLAPEYASSGKLTEKSDIFSFGVMLLELITGRRPVDTAGEMEDSLVDWSRPLCVKAMSDGNYDELADSRLEKNYDVQEMACMVACAAACIRHSARRRPKMSQVVRALEGDVSLDDLNDGVKPGQSSYFGSGTSSEYDASSYSADMKRFRKVALDSREYASSDYGGTSEYGLNPSSTSSEMSRKPSRLSSPDAPPSHS | 699 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 4829412 | 4835756 | - | CcPI632755_11g004590.1 | Cco11g0459 | 191695 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco11g0459 | 699 | SMART | serkin_6 | 337 | 609 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco11g0459 | 699 | MobiDBLite | consensus disorder prediction | 625 | 641 | - | - | |
Cco11g0459 | 699 | MobiDBLite | consensus disorder prediction | 662 | 699 | - | - | |
Cco11g0459 | 699 | ProSitePatterns | Protein kinases ATP-binding region signature. | 343 | 365 | IPR017441 | GO:0005524(InterPro) | |
Cco11g0459 | 699 | Gene3D | Phosphorylase Kinase; domain 1 | 314 | 412 | - | - | |
Cco11g0459 | 699 | Pfam | Protein tyrosine and serine/threonine kinase | 342 | 609 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco11g0459 | 699 | PANTHER | PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 | 169 | 653 | IPR047117 | - | |
Cco11g0459 | 699 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 457 | 469 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco11g0459 | 699 | ProSiteProfiles | Protein kinase domain profile. | 337 | 615 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco11g0459 | 699 | FunFam | proline-rich receptor-like protein kinase PERK1 | 315 | 412 | - | - | |
Cco11g0459 | 699 | Gene3D | Transferase(Phosphotransferase) domain 1 | 413 | 620 | - | - | |
Cco11g0459 | 699 | MobiDBLite | consensus disorder prediction | 1 | 198 | - | - | |
Cco11g0459 | 699 | MobiDBLite | consensus disorder prediction | 67 | 177 | - | - | |
Cco11g0459 | 699 | MobiDBLite | consensus disorder prediction | 615 | 641 | - | - | |
Cco11g0459 | 699 | FunFam | Proline-rich receptor-like protein kinase PERK1 | 413 | 620 | - | - | |
Cco11g0459 | 699 | MobiDBLite | consensus disorder prediction | 30 | 66 | - | - | |
Cco11g0459 | 699 | MobiDBLite | consensus disorder prediction | 231 | 312 | - | - | |
Cco11g0459 | 699 | MobiDBLite | consensus disorder prediction | 179 | 198 | - | - | |
Cco11g0459 | 699 | SUPERFAMILY | Protein kinase-like (PK-like) | 312 | 609 | IPR011009 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco06g0955 | Cco-Chr6:12836502 | Cco11g0459 | Cco-Chr11:4829412 | 4.50E-159 | dispersed | |
Cco07g0981 | Cco-Chr7:22619000 | Cco11g0459 | Cco-Chr11:4829412 | 1.00E-168 | dispersed | |
Cco11g0264 | Cco-Chr11:2575393 | Cco11g0459 | Cco-Chr11:4829412 | 1.00E-161 | dispersed | |
Cco11g0459 | Cco-Chr11:4829412 | Cco11g0541 | Cco-Chr11:5714802 | 4.40E-123 | dispersed | |
Cco11g0459 | Cco-Chr11:4829412 | Cco11g1720 | Cco-Chr11:30038894 | 4.30E-59 | wgd | |
Cco11g0459 | Cco-Chr11:4829412 | Cco05g2185 | Cco-Chr5:30650028 | 4.90E-64 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
87223 | PF07714 | PK_Tyr_Ser-Thr | 2.60E-46 | CL0016 | Cco | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco11g0459 | - | - | - | 0.0 |