Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco11g0470 | ATGGCTAAGGACGATTCTGCAAGGCCTCCACTTCAGCGCCCCACCATTACTCTGCCGCCGCGCCCTTCTATGGAGGCTTTTTTCGCTGGCGGACCCACTGGAGTTAGCCCTGGCCCGATGACTCTTCTCTCCAGTTACTTCGCCGACGGTGCCGTTGACTCGCCCTCCTTCTCCCAGCTTCTCGCCGGAGCTATGGCCTCTCCGATGGCTATGGGGTTTTTCGGAACTGGGTCCACACCCAATTATTACGCCAAGGATGGAACCGCCTCGGAATTGGAATTTGGGATGAAACAATCGAAGCCGCTGAATTTAGTGGTAGCTCGGCCTCCTTTGTTCTCGGTCCCGCCGGGGCTTAGTCCTTCTGGGTTGCTTAATTCGCCTGGGTTTTATCCTCCTCAGAGTCCATTCGGTATGTCGCACCAGCAAGCATTGGCTCAGGTTACTGCTCAAGCGGCATTGGCAAATTCTCATATGCATATGCAGCAAGCTGAATATCAACATTCTTCGGTACCAGCTCCTACAGAACCGTTGACACGGGATCCATCATTTTCTCTTGATGAAGCATCTCAACTGGCCATATTACCCTCCACTTCAGACACAAAAAGTCTGAATGCAGAACCGACAGAAGTCTCTCATCCTGACAGAAAATATCAACCTCCTCCTCTTCACATCTCTGATAAACCTGCAGAGGATGGCTATAATTGGCGTAAATATGGACAGAAGTTGGTTAAGGGCAGTGAATATCCCCGAAGCTATTACAAATGCACTCATTTGAATTGCCCTGTAAAAAAGAAGATTGAGCGCTCACCTGATGGTCAAATTACTGAAATTATTTACAAAGGGCAGCACAACCATGAACCTCCTCCAGCCAACAAACGTGCAAGAGATAATAGTGAACCGAGTGGATGTACAAATTCTTTGATGAAGCCTGAATGTCGTTTGCAAAATCAAGCTGGAATTTTGAACAAGTCAAGTGAAAATGTGCAATTAGGGTCTAGTGACAGTGAAGAACGAGCTGATACAGAGATAACAGATGACAGAGATGAAGATGAGCCACATCCAAAGAGGCAGAACATTGACGCAGGGACATCTGGTGTTGCCTTGTCACATAAAACACTCACAGAACCAAAAATCATTGTTCAAACAAGAAGTGAGGTTGACCTGTTAGATGACGGTTATAGGTGGCGCAAGTATGGGCAGAAAGTGGTTAAAGGAAATCCTAACCCTAGGAGCTACTACAAATGCACTAGTGCTGGGTGCAACGTCCGAAAGCATGTTGAGAGATCTTCAACAGACTCGAAAGCTGTTGTTACTACATATGAAGGGAAACATAACCATGATGTTCCTGCAGCTAGAAACAGCAGCCACCACACGGTCAACAATACTGTCCCCCAGATCAAACCACACAAAGTTGTAGCTCAGAAACATCCATTACTTAAAGAGATGGAATATGGAACTAATGACCAGAGACCTGCCGTTTTGCGGCTTAAAGAAGAGAAAATCACCGTGTAA | 1512 | 46.76 | MAKDDSARPPLQRPTITLPPRPSMEAFFAGGPTGVSPGPMTLLSSYFADGAVDSPSFSQLLAGAMASPMAMGFFGTGSTPNYYAKDGTASELEFGMKQSKPLNLVVARPPLFSVPPGLSPSGLLNSPGFYPPQSPFGMSHQQALAQVTAQAALANSHMHMQQAEYQHSSVPAPTEPLTRDPSFSLDEASQLAILPSTSDTKSLNAEPTEVSHPDRKYQPPPLHISDKPAEDGYNWRKYGQKLVKGSEYPRSYYKCTHLNCPVKKKIERSPDGQITEIIYKGQHNHEPPPANKRARDNSEPSGCTNSLMKPECRLQNQAGILNKSSENVQLGSSDSEERADTEITDDRDEDEPHPKRQNIDAGTSGVALSHKTLTEPKIIVQTRSEVDLLDDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCNVRKHVERSSTDSKAVVTTYEGKHNHDVPAARNSSHHTVNNTVPQIKPHKVVAQKHPLLKEMEYGTNDQRPAVLRLKEEKITV | 503 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 5016895 | 5021393 | - | CcPI632755_11g004700.1 | Cco11g0470 | 191706 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco11g0470 | 503 | ProSiteProfiles | WRKY domain profile. | 230 | 288 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco11g0470 | 503 | MobiDBLite | consensus disorder prediction | 1 | 31 | - | - | |
Cco11g0470 | 503 | MobiDBLite | consensus disorder prediction | 194 | 231 | - | - | |
Cco11g0470 | 503 | MobiDBLite | consensus disorder prediction | 321 | 362 | - | - | |
Cco11g0470 | 503 | SMART | WRKY_cls | 229 | 287 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco11g0470 | 503 | SMART | WRKY_cls | 389 | 448 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco11g0470 | 503 | MobiDBLite | consensus disorder prediction | 159 | 182 | - | - | |
Cco11g0470 | 503 | MobiDBLite | consensus disorder prediction | 280 | 308 | - | - | |
Cco11g0470 | 503 | Gene3D | WRKY domain | 222 | 289 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco11g0470 | 503 | Gene3D | WRKY domain | 374 | 450 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco11g0470 | 503 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 160 | 460 | IPR044810 | GO:0003700(InterPro) | |
Cco11g0470 | 503 | FunFam | WRKY transcription factor | 220 | 289 | - | - | |
Cco11g0470 | 503 | SUPERFAMILY | WRKY DNA-binding domain | 381 | 449 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco11g0470 | 503 | FunFam | WRKY transcription factor 33 | 376 | 442 | - | - | |
Cco11g0470 | 503 | Pfam | WRKY DNA -binding domain | 390 | 447 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco11g0470 | 503 | Pfam | WRKY DNA -binding domain | 230 | 286 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco11g0470 | 503 | SUPERFAMILY | WRKY DNA-binding domain | 226 | 288 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco11g0470 | 503 | MobiDBLite | consensus disorder prediction | 159 | 175 | - | - | |
Cco11g0470 | 503 | ProSiteProfiles | WRKY domain profile. | 384 | 449 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco06g1429 | Cco-Chr6:24811197 | Cco11g0470 | Cco-Chr11:5016895 | 4.90E-39 | dispersed | |
Cco10g0387 | Cco-Chr10:4528770 | Cco11g0470 | Cco-Chr11:5016895 | 5.20E-69 | dispersed | |
Cco10g0443 | Cco-Chr10:5212577 | Cco11g0470 | Cco-Chr11:5016895 | 1.20E-70 | dispersed | |
Cco10g1145 | Cco-Chr10:23911845 | Cco11g0470 | Cco-Chr11:5016895 | 7.70E-24 | dispersed | |
Cco10g2057 | Cco-Chr10:33947930 | Cco11g0470 | Cco-Chr11:5016895 | 1.50E-47 | dispersed | |
Cco10g2236 | Cco-Chr10:35317552 | Cco11g0470 | Cco-Chr11:5016895 | 1.70E-65 | dispersed | |
Cco11g0470 | Cco-Chr11:5016895 | Cco11g0738 | Cco-Chr11:8139357 | 2.80E-23 | dispersed | |
Cco11g0470 | Cco-Chr11:5016895 | Cco05g2663 | Cco-Chr5:34686077 | 2.30E-118 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
60241 | PF03106 | WRKY | 3.20E-25 | CL0274 | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco11g0470 | - | - | - | 0.0 |