Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g0470 ATGGCTAAGGACGATTCTGCAAGGCCTCCACTTCAGCGCCCCACCATTACTCTGCCGCCGCGCCCTTCTATGGAGGCTTTTTTCGCTGGCGGACCCACTGGAGTTAGCCCTGGCCCGATGACTCTTCTCTCCAGTTACTTCGCCGACGGTGCCGTTGACTCGCCCTCCTTCTCCCAGCTTCTCGCCGGAGCTATGGCCTCTCCGATGGCTATGGGGTTTTTCGGAACTGGGTCCACACCCAATTATTACGCCAAGGATGGAACCGCCTCGGAATTGGAATTTGGGATGAAACAATCGAAGCCGCTGAATTTAGTGGTAGCTCGGCCTCCTTTGTTCTCGGTCCCGCCGGGGCTTAGTCCTTCTGGGTTGCTTAATTCGCCTGGGTTTTATCCTCCTCAGAGTCCATTCGGTATGTCGCACCAGCAAGCATTGGCTCAGGTTACTGCTCAAGCGGCATTGGCAAATTCTCATATGCATATGCAGCAAGCTGAATATCAACATTCTTCGGTACCAGCTCCTACAGAACCGTTGACACGGGATCCATCATTTTCTCTTGATGAAGCATCTCAACTGGCCATATTACCCTCCACTTCAGACACAAAAAGTCTGAATGCAGAACCGACAGAAGTCTCTCATCCTGACAGAAAATATCAACCTCCTCCTCTTCACATCTCTGATAAACCTGCAGAGGATGGCTATAATTGGCGTAAATATGGACAGAAGTTGGTTAAGGGCAGTGAATATCCCCGAAGCTATTACAAATGCACTCATTTGAATTGCCCTGTAAAAAAGAAGATTGAGCGCTCACCTGATGGTCAAATTACTGAAATTATTTACAAAGGGCAGCACAACCATGAACCTCCTCCAGCCAACAAACGTGCAAGAGATAATAGTGAACCGAGTGGATGTACAAATTCTTTGATGAAGCCTGAATGTCGTTTGCAAAATCAAGCTGGAATTTTGAACAAGTCAAGTGAAAATGTGCAATTAGGGTCTAGTGACAGTGAAGAACGAGCTGATACAGAGATAACAGATGACAGAGATGAAGATGAGCCACATCCAAAGAGGCAGAACATTGACGCAGGGACATCTGGTGTTGCCTTGTCACATAAAACACTCACAGAACCAAAAATCATTGTTCAAACAAGAAGTGAGGTTGACCTGTTAGATGACGGTTATAGGTGGCGCAAGTATGGGCAGAAAGTGGTTAAAGGAAATCCTAACCCTAGGAGCTACTACAAATGCACTAGTGCTGGGTGCAACGTCCGAAAGCATGTTGAGAGATCTTCAACAGACTCGAAAGCTGTTGTTACTACATATGAAGGGAAACATAACCATGATGTTCCTGCAGCTAGAAACAGCAGCCACCACACGGTCAACAATACTGTCCCCCAGATCAAACCACACAAAGTTGTAGCTCAGAAACATCCATTACTTAAAGAGATGGAATATGGAACTAATGACCAGAGACCTGCCGTTTTGCGGCTTAAAGAAGAGAAAATCACCGTGTAA 1512 46.76 MAKDDSARPPLQRPTITLPPRPSMEAFFAGGPTGVSPGPMTLLSSYFADGAVDSPSFSQLLAGAMASPMAMGFFGTGSTPNYYAKDGTASELEFGMKQSKPLNLVVARPPLFSVPPGLSPSGLLNSPGFYPPQSPFGMSHQQALAQVTAQAALANSHMHMQQAEYQHSSVPAPTEPLTRDPSFSLDEASQLAILPSTSDTKSLNAEPTEVSHPDRKYQPPPLHISDKPAEDGYNWRKYGQKLVKGSEYPRSYYKCTHLNCPVKKKIERSPDGQITEIIYKGQHNHEPPPANKRARDNSEPSGCTNSLMKPECRLQNQAGILNKSSENVQLGSSDSEERADTEITDDRDEDEPHPKRQNIDAGTSGVALSHKTLTEPKIIVQTRSEVDLLDDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCNVRKHVERSSTDSKAVVTTYEGKHNHDVPAARNSSHHTVNNTVPQIKPHKVVAQKHPLLKEMEYGTNDQRPAVLRLKEEKITV 503
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5016895 5021393 - CcPI632755_11g004700.1 Cco11g0470 191706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g0470 503 ProSiteProfiles WRKY domain profile. 230 288 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco11g0470 503 MobiDBLite consensus disorder prediction 1 31 - -
Cco11g0470 503 MobiDBLite consensus disorder prediction 194 231 - -
Cco11g0470 503 MobiDBLite consensus disorder prediction 321 362 - -
Cco11g0470 503 SMART WRKY_cls 229 287 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco11g0470 503 SMART WRKY_cls 389 448 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco11g0470 503 MobiDBLite consensus disorder prediction 159 182 - -
Cco11g0470 503 MobiDBLite consensus disorder prediction 280 308 - -
Cco11g0470 503 Gene3D WRKY domain 222 289 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco11g0470 503 Gene3D WRKY domain 374 450 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco11g0470 503 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 160 460 IPR044810 GO:0003700(InterPro)
Cco11g0470 503 FunFam WRKY transcription factor 220 289 - -
Cco11g0470 503 SUPERFAMILY WRKY DNA-binding domain 381 449 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco11g0470 503 FunFam WRKY transcription factor 33 376 442 - -
Cco11g0470 503 Pfam WRKY DNA -binding domain 390 447 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco11g0470 503 Pfam WRKY DNA -binding domain 230 286 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco11g0470 503 SUPERFAMILY WRKY DNA-binding domain 226 288 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco11g0470 503 MobiDBLite consensus disorder prediction 159 175 - -
Cco11g0470 503 ProSiteProfiles WRKY domain profile. 384 449 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g1429 Cco-Chr6:24811197 Cco11g0470 Cco-Chr11:5016895 4.90E-39 dispersed
Cco10g0387 Cco-Chr10:4528770 Cco11g0470 Cco-Chr11:5016895 5.20E-69 dispersed
Cco10g0443 Cco-Chr10:5212577 Cco11g0470 Cco-Chr11:5016895 1.20E-70 dispersed
Cco10g1145 Cco-Chr10:23911845 Cco11g0470 Cco-Chr11:5016895 7.70E-24 dispersed
Cco10g2057 Cco-Chr10:33947930 Cco11g0470 Cco-Chr11:5016895 1.50E-47 dispersed
Cco10g2236 Cco-Chr10:35317552 Cco11g0470 Cco-Chr11:5016895 1.70E-65 dispersed
Cco11g0470 Cco-Chr11:5016895 Cco11g0738 Cco-Chr11:8139357 2.80E-23 dispersed
Cco11g0470 Cco-Chr11:5016895 Cco05g2663 Cco-Chr5:34686077 2.30E-118 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60241 PF03106 WRKY 3.20E-25 CL0274 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g0470 - - - 0.0