Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g0474 ATGGTGCTTTCCCCCACTTTCTCCCCATGCCTTCTCTCCTCTCACCTTCTTCCATGTCTGTGGAGCGAGCTTTGCCTGAGGCCAACACCACCTCCACTCAATGCCACCGATGAAACCCCCGTCGAATGCTACGCCTGCACTCAAGTCGGCGTTCCAGCCTTCCACTCCACCAGCTGCGACCACGCTCACCAGCAACCCGAATGGGAAGCCTCCGCGGGTTCTTCCCTCGTTCCCATTCAACCCACCAAACCCTCCCCATCTCGCCGCCCCGCACTGCCACATCCTTCCGGTTGCTTCGGCACCGTTCTCGACCCGAGAACCAAGCCGGTTCAAAGATGGAACCGGGTTCTGTTATTGGCCCGTGGAATGGCTCTCGCTGTTGATCCTCTTTACTTCTACGCTCTGTCTATCGGAAGAGGAGGCTCCCCCTGCCTCTACATGGACGGTCGATTGGCCGCCGTCGTCACCGTCCTCCGCACGTGCCTCGATTTCGTTCACTTGTGGCACGTTTGGCTTCAATTCCGCCTCGCTTACGTGTCCAAAGAGAGTATGGTGATTGGCTGTGGGAAACTCGTGTGGGACGCACGTGCTATCGCCTCTCATTACGTTCATTCCTTCAAAGGCTTCTGGTTTGATGCCTTTGTCATCCTCCCTGTTCCTCAGATTGTTTATTGGTTTGTTTTACCAAAACTGATCAGAGAAGAGAGAATAAAACTTATAATGACAGTTGTCTTATTACTGTTCTTGTTCCAATTCCTCCCAAAAGTTTACCACTCCATTATTTTAATGAGAAGAATGCAGAAGGTCACTGGATACATCTTCGGCACCATTTGGTGGGGTTTTGGCCTCAATCTCATTGCCTATTTCATTGCTTCTCATGTTGCTGGGGGTTGCTGGTATGTTCTTGCAATACAACGAGTTGCTTCTTGCATCCAGCAACATTGTGAGAGAAACAAGTGCAATCTATCTCTGTCTTGCTCTGAGGAGGTGTGTTATCAGTTTCTCTCATCAGCGACAACAATTGAAAGTTCGTGTGGTCGTAATTCAACTGCTACATTTAGGAAACCACTATGCTTGGATGTTAAAGGTCCATTCGCCTATGGCATCTACAAGTGGGCTCTTCCAGTCATTTCCAGCAATTCAGTAGCGGTCAAAATCCTTTATCCCATCTTTTGGGGATTAATGACTCTCAGCACCTTTGGCAATGATCTGGAGCCTACCAGTAATTGGCTAGAAGTATGCTTCAGTATTTGCACGGTGCTAAGTGGACTGCTGCTTTTCACTCTTTTGATTGGTAATATCCAGGTTCTTTTGCACGCTGTCATGGCAAGGAGGCGGAAAATGCAGCTGAGATGTCGAGATTTGGAGTGGTGGATGAGGAGACGACAATTGCCATCTCGTTTGAGGCAACGAGTTCGACACTACGAACACCAAAGATGGGCAGCCATGGGCGGAGAAGATGAGATGGAACTAATCAATGATTTGCCCGAAGGTCTTCGAAGAGACATTAAACGTCATCTTTGTGTTGATCTAATCAGAAAGGTGCCTCTCTTCCAAAACCTGGAGGAGCTGATTCTAGACAACATATGTGATCGAGTCAAGCCACTTGTATTCTCCAAAGATGAAAAGATTATCAGAGAAGGGGATCCTGTTCCAAGGATGTTGTTCATAGTGTGTGGACGAGTAAAACGTAGCCAAAGCCTAAGCAAGGGTATGACAGCAACAAGTTGGATTGAACCAGGAGGATTTCTTGGCGATGAGCTGCTATCGTGGTGTCTTCGGCGCCCATTTCTGGAGAGACTTCCAGCTTCATCCGCTACATTTGTTTGCATTGAACCAACAGAAGCATTTGCCTTGAAAGCAGACCATCTGAAGTACATAACCGATCACTTCCGCTACAAATTCGCGAACGAGAGACTGAAGAGAACTGCAAGATATTACTCCTCCAACTGGAGAACATGGGCTGCTGTGAACATACAATTCGCTTGGCGTCGATACCGAAAGAGGATGAGACGTCCAGTGATAGCCGTGGTGGAAAATGGAAGCAATGAACGTAGGCTTTTGCAGTATGCTGCAATGTTCATGTCATTCAGGCCACATGACCATCTTGAATAG 2115 48.23 MVLSPTFSPCLLSSHLLPCLWSELCLRPTPPPLNATDETPVECYACTQVGVPAFHSTSCDHAHQQPEWEASAGSSLVPIQPTKPSPSRRPALPHPSGCFGTVLDPRTKPVQRWNRVLLLARGMALAVDPLYFYALSIGRGGSPCLYMDGRLAAVVTVLRTCLDFVHLWHVWLQFRLAYVSKESMVIGCGKLVWDARAIASHYVHSFKGFWFDAFVILPVPQIVYWFVLPKLIREERIKLIMTVVLLLFLFQFLPKVYHSIILMRRMQKVTGYIFGTIWWGFGLNLIAYFIASHVAGGCWYVLAIQRVASCIQQHCERNKCNLSLSCSEEVCYQFLSSATTIESSCGRNSTATFRKPLCLDVKGPFAYGIYKWALPVISSNSVAVKILYPIFWGLMTLSTFGNDLEPTSNWLEVCFSICTVLSGLLLFTLLIGNIQVLLHAVMARRRKMQLRCRDLEWWMRRRQLPSRLRQRVRHYEHQRWAAMGGEDEMELINDLPEGLRRDIKRHLCVDLIRKVPLFQNLEELILDNICDRVKPLVFSKDEKIIREGDPVPRMLFIVCGRVKRSQSLSKGMTATSWIEPGGFLGDELLSWCLRRPFLERLPASSATFVCIEPTEAFALKADHLKYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRKRMRRPVIAVVENGSNERRLLQYAAMFMSFRPHDHLE 704
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5052540 5056957 - CcPI632755_11g004740.1 Cco11g0474 191710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g0474 704 Gene3D - 146 441 - -
Cco11g0474 704 MobiDBLite consensus disorder prediction 70 94 - -
Cco11g0474 704 ProSiteProfiles cAMP/cGMP binding motif profile. 517 596 IPR000595 -
Cco11g0474 704 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 100 671 - -
Cco11g0474 704 SUPERFAMILY Voltage-gated potassium channels 105 439 - -
Cco11g0474 704 CDD CAP_ED 517 627 IPR000595 -
Cco11g0474 704 SUPERFAMILY cAMP-binding domain-like 444 631 IPR018490 -
Cco11g0474 704 Gene3D Jelly Rolls 515 633 IPR014710 -
Cco11g0474 704 Pfam Cyclic nucleotide-binding domain 537 626 IPR000595 -
Cco11g0474 704 Gene3D Helix hairpin bin 443 508 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g1778 Cco-Chr7:31929143 Cco11g0474 Cco-Chr11:5052540 2.90E-200 dispersed
Cco10g0601 Cco-Chr10:8019795 Cco11g0474 Cco-Chr11:5052540 7.10E-184 dispersed
Cco10g1454 Cco-Chr10:27664234 Cco11g0474 Cco-Chr11:5052540 8.20E-105 dispersed
Cco11g0474 Cco-Chr11:5052540 Cco05g0111 Cco-Chr5:900849 7.50E-14 dispersed
Cco11g0474 Cco-Chr11:5052540 Cco10g1423 Cco-Chr10:27327317 1.10E-100 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g0474 K05391 - csv:101203560 1315.06