Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g0501 ATGGATTTGTTATTAATTGCCTTGTTGTTATGCTTCGATTTACCTCGTCGGAACGCCTCCCATCGTTCTCGGCGATTGCAATTGGATTCCCGACTTCTTGGAGTCATCAATGCGTTCTTGATTTGCTTTGCCCACCTTGTTTGTTCGATTCATTTAAGGGAGGCCATGAATGCGAATAGTCCGCGATTTCAATCGTTTGGTCAAACTGAGATTAACTGGGACAAGCTTGATAAAGCGAAATTTTATGGCGTAGGAGCTGGTCTCTTTACAGGGATTACAGTTGCACTGTATCCTGTTTCTGTTGTAAAAACGAGGATGCAGGTTGCTGTAAAGGATTCTGCCGAGAAAAATGCCCTGTCTGTTATTAAGGGCTTACTGAAGAATGATGGGGTTCCTGGTCTTTACAGAGGGTTTGGCACAGTAATAACTGGTGCAATTCCTGCCAGGATTATCTTTCTTACTGCTTTGGAGACAACCAAAGTGGGAGCCTATAAACTGGTTGAGCCATTTAAATTTTCTGAACCTACACAGGCTGCTATGGCAAATGGGTTAGCTGGCATGACTGCCTCACTTTTTTCTCAAGCTGTTTTTGTTCCAATTGATGTGATTAGTCAGAAGCTCATGGTTCAAGGATACTCAGGAAATACAAGATATAATGGGGGTTTAGATGTTGCTCGTAAACTGATAAAGTCCAATGGGATCCGGGGATTGTATAAAGGTTTTGGGTTATCTGTTATGACCTACTCTCCATCTAGTGCTGTATGGTGGGCAAGTTATGGTGCAAGTCAACGCGTCATCTGGAGATTCTTAGGTCAAAACTCTGCTTCTGAGAAATTTGCTCCCAGCCATACCCAACTTATTTCAGTTCAAGCTGCGGGTGGAATAATTGCAGGTGCAACAGCTTCCTGCATTACAACACCTTTGGACACCATAAAGACTCGCTTACAGGTGATGGGTGATAAAGGGAAGACAGCAAGACAAATTGTTGAAAGCTTGATCGCTGAGGATGGATGGAAAGGTTTATATAGGGGGCTGGGTCCTCGGTTTTTCAGCATGTCGGCCTGGGGAACCTCGATGATATTGGCTTACGAGTACTTGAAGCGGTTGTGTGCAAAAGATGAACAGACTTGA 1131 43.85 MDLLLIALLLCFDLPRRNASHRSRRLQLDSRLLGVINAFLICFAHLVCSIHLREAMNANSPRFQSFGQTEINWDKLDKAKFYGVGAGLFTGITVALYPVSVVKTRMQVAVKDSAEKNALSVIKGLLKNDGVPGLYRGFGTVITGAIPARIIFLTALETTKVGAYKLVEPFKFSEPTQAAMANGLAGMTASLFSQAVFVPIDVISQKLMVQGYSGNTRYNGGLDVARKLIKSNGIRGLYKGFGLSVMTYSPSSAVWWASYGASQRVIWRFLGQNSASEKFAPSHTQLISVQAAGGIIAGATASCITTPLDTIKTRLQVMGDKGKTARQIVESLIAEDGWKGLYRGLGPRFFSMSAWGTSMILAYEYLKRLCAKDEQT 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5245461 5253154 - CcPI632755_11g005010.1 Cco11g0501 191737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g0501 376 Gene3D Mitochondrial carrier domain 82 376 IPR023395 -
Cco11g0501 376 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 67 375 - -
Cco11g0501 376 PRINTS Mitochondrial carrier protein signature 294 316 IPR002067 GO:0055085(InterPro)
Cco11g0501 376 PRINTS Mitochondrial carrier protein signature 238 256 IPR002067 GO:0055085(InterPro)
Cco11g0501 376 PRINTS Mitochondrial carrier protein signature 94 108 IPR002067 GO:0055085(InterPro)
Cco11g0501 376 SUPERFAMILY Mitochondrial carrier 74 366 IPR023395 -
Cco11g0501 376 ProSiteProfiles Solute carrier (Solcar) repeat profile. 74 162 IPR018108 -
Cco11g0501 376 ProSiteProfiles Solute carrier (Solcar) repeat profile. 285 369 IPR018108 -
Cco11g0501 376 ProSiteProfiles Solute carrier (Solcar) repeat profile. 177 265 IPR018108 -
Cco11g0501 376 FunFam Mitochondrial substrate carrier family protein 82 373 - -
Cco11g0501 376 Pfam Mitochondrial carrier protein 86 160 IPR018108 -
Cco11g0501 376 Pfam Mitochondrial carrier protein 179 266 IPR018108 -
Cco11g0501 376 Pfam Mitochondrial carrier protein 290 372 IPR018108 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g0806 Cco-Chr5:6784783 Cco11g0501 Cco-Chr11:5245461 5.80E-86 dispersed
Cco05g2054 Cco-Chr5:29585425 Cco11g0501 Cco-Chr11:5245461 2.00E-68 dispersed
Cco09g0169 Cco-Chr9:1520436 Cco11g0501 Cco-Chr11:5245461 8.40E-12 dispersed
Cco09g1226 Cco-Chr9:12476630 Cco11g0501 Cco-Chr11:5245461 3.80E-12 dispersed
Cco10g0173 Cco-Chr10:1669990 Cco11g0501 Cco-Chr11:5245461 1.60E-10 dispersed
Cco11g0501 Cco-Chr11:5245461 Cco09g0080 Cco-Chr9:732778 2.10E-71 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g0501 K15121 - csv:101206140 613.609