Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco11g0501 | ATGGATTTGTTATTAATTGCCTTGTTGTTATGCTTCGATTTACCTCGTCGGAACGCCTCCCATCGTTCTCGGCGATTGCAATTGGATTCCCGACTTCTTGGAGTCATCAATGCGTTCTTGATTTGCTTTGCCCACCTTGTTTGTTCGATTCATTTAAGGGAGGCCATGAATGCGAATAGTCCGCGATTTCAATCGTTTGGTCAAACTGAGATTAACTGGGACAAGCTTGATAAAGCGAAATTTTATGGCGTAGGAGCTGGTCTCTTTACAGGGATTACAGTTGCACTGTATCCTGTTTCTGTTGTAAAAACGAGGATGCAGGTTGCTGTAAAGGATTCTGCCGAGAAAAATGCCCTGTCTGTTATTAAGGGCTTACTGAAGAATGATGGGGTTCCTGGTCTTTACAGAGGGTTTGGCACAGTAATAACTGGTGCAATTCCTGCCAGGATTATCTTTCTTACTGCTTTGGAGACAACCAAAGTGGGAGCCTATAAACTGGTTGAGCCATTTAAATTTTCTGAACCTACACAGGCTGCTATGGCAAATGGGTTAGCTGGCATGACTGCCTCACTTTTTTCTCAAGCTGTTTTTGTTCCAATTGATGTGATTAGTCAGAAGCTCATGGTTCAAGGATACTCAGGAAATACAAGATATAATGGGGGTTTAGATGTTGCTCGTAAACTGATAAAGTCCAATGGGATCCGGGGATTGTATAAAGGTTTTGGGTTATCTGTTATGACCTACTCTCCATCTAGTGCTGTATGGTGGGCAAGTTATGGTGCAAGTCAACGCGTCATCTGGAGATTCTTAGGTCAAAACTCTGCTTCTGAGAAATTTGCTCCCAGCCATACCCAACTTATTTCAGTTCAAGCTGCGGGTGGAATAATTGCAGGTGCAACAGCTTCCTGCATTACAACACCTTTGGACACCATAAAGACTCGCTTACAGGTGATGGGTGATAAAGGGAAGACAGCAAGACAAATTGTTGAAAGCTTGATCGCTGAGGATGGATGGAAAGGTTTATATAGGGGGCTGGGTCCTCGGTTTTTCAGCATGTCGGCCTGGGGAACCTCGATGATATTGGCTTACGAGTACTTGAAGCGGTTGTGTGCAAAAGATGAACAGACTTGA | 1131 | 43.85 | MDLLLIALLLCFDLPRRNASHRSRRLQLDSRLLGVINAFLICFAHLVCSIHLREAMNANSPRFQSFGQTEINWDKLDKAKFYGVGAGLFTGITVALYPVSVVKTRMQVAVKDSAEKNALSVIKGLLKNDGVPGLYRGFGTVITGAIPARIIFLTALETTKVGAYKLVEPFKFSEPTQAAMANGLAGMTASLFSQAVFVPIDVISQKLMVQGYSGNTRYNGGLDVARKLIKSNGIRGLYKGFGLSVMTYSPSSAVWWASYGASQRVIWRFLGQNSASEKFAPSHTQLISVQAAGGIIAGATASCITTPLDTIKTRLQVMGDKGKTARQIVESLIAEDGWKGLYRGLGPRFFSMSAWGTSMILAYEYLKRLCAKDEQT | 376 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 5245461 | 5253154 | - | CcPI632755_11g005010.1 | Cco11g0501 | 191737 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco11g0501 | 376 | Gene3D | Mitochondrial carrier domain | 82 | 376 | IPR023395 | - | |
Cco11g0501 | 376 | PANTHER | MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J | 67 | 375 | - | - | |
Cco11g0501 | 376 | PRINTS | Mitochondrial carrier protein signature | 294 | 316 | IPR002067 | GO:0055085(InterPro) | |
Cco11g0501 | 376 | PRINTS | Mitochondrial carrier protein signature | 238 | 256 | IPR002067 | GO:0055085(InterPro) | |
Cco11g0501 | 376 | PRINTS | Mitochondrial carrier protein signature | 94 | 108 | IPR002067 | GO:0055085(InterPro) | |
Cco11g0501 | 376 | SUPERFAMILY | Mitochondrial carrier | 74 | 366 | IPR023395 | - | |
Cco11g0501 | 376 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 74 | 162 | IPR018108 | - | |
Cco11g0501 | 376 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 285 | 369 | IPR018108 | - | |
Cco11g0501 | 376 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 177 | 265 | IPR018108 | - | |
Cco11g0501 | 376 | FunFam | Mitochondrial substrate carrier family protein | 82 | 373 | - | - | |
Cco11g0501 | 376 | Pfam | Mitochondrial carrier protein | 86 | 160 | IPR018108 | - | |
Cco11g0501 | 376 | Pfam | Mitochondrial carrier protein | 179 | 266 | IPR018108 | - | |
Cco11g0501 | 376 | Pfam | Mitochondrial carrier protein | 290 | 372 | IPR018108 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco05g0806 | Cco-Chr5:6784783 | Cco11g0501 | Cco-Chr11:5245461 | 5.80E-86 | dispersed | |
Cco05g2054 | Cco-Chr5:29585425 | Cco11g0501 | Cco-Chr11:5245461 | 2.00E-68 | dispersed | |
Cco09g0169 | Cco-Chr9:1520436 | Cco11g0501 | Cco-Chr11:5245461 | 8.40E-12 | dispersed | |
Cco09g1226 | Cco-Chr9:12476630 | Cco11g0501 | Cco-Chr11:5245461 | 3.80E-12 | dispersed | |
Cco10g0173 | Cco-Chr10:1669990 | Cco11g0501 | Cco-Chr11:5245461 | 1.60E-10 | dispersed | |
Cco11g0501 | Cco-Chr11:5245461 | Cco09g0080 | Cco-Chr9:732778 | 2.10E-71 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco11g0501 | K15121 | - | csv:101206140 | 613.609 |