Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco11g0509 | ATGGGTGCTGTCTGCTGCTGTTTGAGCGTGGAAGATTTTGAAGACTATGTTAATCCTAATAGTTCAGTATATAGGAATTGCACCTGTCTTAGTTGCTTCATTCAGAGTTTCTTAAATGCATACACATTGATTTTTCGAAGAGGAGAAGTGCATTCTGTCTCTTCATCAATTCAAGGGGCAACATCTATGAATTCCACAGCATCAACAGATAACTCTTTATCTGAAATGTACCGCTCACCTCCAAGGCCATTGCCTTATGATGCTGATCCCAGATATATCCGCTTGCAGCGGGATGGATTAATTTCTAGGCGAGAGAAGGGGTCAAGCCATTTACATGAGGAGTCAGAACCTTTAAGAAGTGATGTGGATACCGATTCAGATTCTTTGGGCTCAGCAGGCAAATGGAATGGTTCTGCTTGTCTTGAGGAATCTAAAGAAAACCTTGGCAAATCATCTCTAAAGTTCCCTTCAACTAAATCTACCACTGGACTTGGGTATTCTTATACATCCTCCGAAGACGAGGATGTCTGTCCAACGTGTCTTGAAGAATATACTTCAGAGAATCCCAAGATAGTGACAAAATGCTCTCATCATTTTCACCTTGGATGTATCTATGAGTGGATGGAGAGAAGTGATAACTGTCCAGTTTGTGGCAAGGTAATGGCATTCGATGAAACGACTTGA | 684 | 41.52 | MGAVCCCLSVEDFEDYVNPNSSVYRNCTCLSCFIQSFLNAYTLIFRRGEVHSVSSSIQGATSMNSTASTDNSLSEMYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRSDVDTDSDSLGSAGKWNGSACLEESKENLGKSSLKFPSTKSTTGLGYSYTSSEDEDVCPTCLEEYTSENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGKVMAFDETT | 227 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 5346566 | 5350972 | - | CcPI632755_11g005090.1 | Cco11g0509 | 191745 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco11g0509 | 227 | SMART | ring_2 | 177 | 217 | IPR001841 | - | |
Cco11g0509 | 227 | FunFam | E3 ubiquitin-protein ligase At3g02290-like | 154 | 224 | - | - | |
Cco11g0509 | 227 | MobiDBLite | consensus disorder prediction | 56 | 89 | - | - | |
Cco11g0509 | 227 | ProSiteProfiles | Zinc finger RING-type profile. | 177 | 217 | IPR001841 | - | |
Cco11g0509 | 227 | Pfam | Ring finger domain | 176 | 217 | IPR001841 | - | |
Cco11g0509 | 227 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 154 | 225 | IPR013083 | - | |
Cco11g0509 | 227 | CDD | RING-H2_AIRP1-like | 173 | 221 | - | - | |
Cco11g0509 | 227 | MobiDBLite | consensus disorder prediction | 103 | 123 | - | - | |
Cco11g0509 | 227 | MobiDBLite | consensus disorder prediction | 103 | 129 | - | - | |
Cco11g0509 | 227 | MobiDBLite | consensus disorder prediction | 56 | 76 | - | - | |
Cco11g0509 | 227 | SUPERFAMILY | RING/U-box | 171 | 223 | - | - | |
Cco11g0509 | 227 | PANTHER | ZINC FINGER, RING/FYVE/PHD-TYPE | 1 | 223 | - | GO:0004842(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco11g0509 | Cco-Chr11:5346566 | Cco01g0260 | Cco-Chr1:2485461 | 3.00E-17 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco11g0509 | - | - | - | 0.0 |