Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g0522 ATGTTGTTCCACCCTAAACTCAAAAGAAAAAGAAAAGAAAAAAGTGAAGGAGATTCAAAGAAAAAGGTTAAAAAGATGAGTGGGGCAGGAAGAAGTGCAAAGGATGGTGATGAAGAGAAGAGCAGTATTAGCACTCATTTAATGGGAATGAAGAGAACTGAGGCTACTGTTTCCTGTCTTGTGGCTTCTTTATTGTTTTGGGCTTCTGCAATAAATGGCTTGTTATCTCCCAAAGGTGTTAACTATGAAGTTCAAGCTTTGATGGGTATAAAAGCTTCTCTTCAAGATCCCCATGGTGTGCTTGAGAATTGGGATGGGGATTCTGTTGACCCATGTAGTTGGACTATGGTTACTTGCTCTCCTGAGAGCCTTGTCATTGGCTTAGGGACTCCAAGCCAGAACCTGTCTGGGACTCTTTCTCCAACCATTGGGAATTTGACAAACCTTCAAATTGTGCTGTTGCAGAACAACAATATAACAGGCCCAATTCCCCCAGAGCTTGGGAGGCTCTCAAAGCTCCAAACACTTGACCTATCAAACAATTTCTTCACAGGGGAAATTCCTTCTCCTTTAGGCCATTTGAGAAGCCTACAGTACTTGAGGCTTAACAACAACAGTCTTTCTGGGGTAATTCCAATGTCTTTAGCTAACATGACACAACTTGCCTTTCTTGATGTGTCTTATAATAATATCAGTGGCCCTCTGCCTAGATTTCCCAGCAAAACATTCAACATTGTTGGGAACCCTCTGATTTGTGCAACTGGGTCGGAGGCCGGTTGCCACGGTACAACTCTAATGCCCATGTCCATGAATTTGAACAGTACACAAACTGGTTTACCTGCTGTGAAATTGAAGAGTCATAAAATGGCCCTTACATTTGGCTTGAGCCTAGCTTGCCTATGTCTGATTGTTCTTGTATTTGGACTGTTCATATGGTGGAGAAAACGAAGCAATCGACCTACATTCTTTGATGTAAAAGACCAACAACATGAGGAAATTTCGCTTGGAAATCTGAGAAGGTTCCAATTTAGAGAACTTCAGATAGCAACAAACAATTTCAGCAGCAAGAACATACTAGGAAAGGGAGGTTTTGGAAATGTTTACAAAGGAATTCTTTCAGATGGAACGGTTGTTGCTGTTAAAAGGCTCAAAGATGGCAATGCAAGCAGAGGCGAAATCCAGTTTCAGACTGAAGTTGAGATGATCAGCCTAGCCGTGCACCGTCATCTCCTCAGATTATACGGATTTTGCAACACACCAACTGAAAGGCTTCTTGTTTACCCATATATGTCGAATGGAAGTGTTGCATCACGTCTCAAAGGAAAACCGGTATTGGACTGGGGAACAAGGAAGAGGATTGCTATAGGAGCTGCAAGGGGATTGTTATACCTACATGAACAGTGTGACCCAAAGATAATACATAGAGATGTTAAGGCTGCAAACATATTGCTTGATGACTACTGCGAGGCTGTCGTCGGAGATTTCGGGTTAGCAAAGCTTCTGGATCATCAAGATTCACACGTCACAACTGCTGTGAGAGGCACCGTGGGACATATAGCTCCTGAGTATCTATCCACCGGACAGTCCTCCGAGAAAACGGATGTTTTCGGCTTTGGAATCCTACTCCTTGAACTGATCACAGGGCAGAGAGCCCTTGAGTTTGGCAAAGCAGCTAATCAGAAAGGAGGCATTCTTGACTGGGTGAAGAAGATTCACCTAGAGAAGAAGCTGGAAATGTTAGTGGACAAGGATCTGAAAGCCAACTATGACAGAGTTGAACTAGAGGAGATGGTTCAAGTGGCTTTGTTGTGCACACAATACCTACCAGGACATAGACCAAGGATGTCAGAAGTTGTCAGAATGCTTGAAGGAGAAGGGCTTGCTGTGAGATGGGAAGCTTCTCAGAGAGTTGACTCAACAAAGTGCAAACCCCATGATTTCTCTTCCTCAGACAGATACTCTGATCTCACAGATGATTCATCATTGTTGGTTCAAGCCATGGAGCTCTCTGGTCCAAGGTGA 2022 43.47 MLFHPKLKRKRKEKSEGDSKKKVKKMSGAGRSAKDGDEEKSSISTHLMGMKRTEATVSCLVASLLFWASAINGLLSPKGVNYEVQALMGIKASLQDPHGVLENWDGDSVDPCSWTMVTCSPESLVIGLGTPSQNLSGTLSPTIGNLTNLQIVLLQNNNITGPIPPELGRLSKLQTLDLSNNFFTGEIPSPLGHLRSLQYLRLNNNSLSGVIPMSLANMTQLAFLDVSYNNISGPLPRFPSKTFNIVGNPLICATGSEAGCHGTTLMPMSMNLNSTQTGLPAVKLKSHKMALTFGLSLACLCLIVLVFGLFIWWRKRSNRPTFFDVKDQQHEEISLGNLRRFQFRELQIATNNFSSKNILGKGGFGNVYKGILSDGTVVAVKRLKDGNASRGEIQFQTEVEMISLAVHRHLLRLYGFCNTPTERLLVYPYMSNGSVASRLKGKPVLDWGTRKRIAIGAARGLLYLHEQCDPKIIHRDVKAANILLDDYCEAVVGDFGLAKLLDHQDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQRALEFGKAANQKGGILDWVKKIHLEKKLEMLVDKDLKANYDRVELEEMVQVALLCTQYLPGHRPRMSEVVRMLEGEGLAVRWEASQRVDSTKCKPHDFSSSDRYSDLTDDSSLLVQAMELSGPR 673
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5505113 5510239 - CcPI632755_11g005220.1 Cco11g0522 191758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g0522 673 Gene3D Phosphorylase Kinase; domain 1 322 429 - -
Cco11g0522 673 Gene3D Ribonuclease Inhibitor 80 262 IPR032675 -
Cco11g0522 673 Pfam Leucine rich repeat N-terminal domain 81 120 IPR013210 -
Cco11g0522 673 FunFam Somatic embryogenesis receptor-like kinase 1 430 642 - -
Cco11g0522 673 MobiDBLite consensus disorder prediction 11 41 - -
Cco11g0522 673 Pfam Protein tyrosine and serine/threonine kinase 356 622 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco11g0522 673 SMART serkin_6 353 622 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco11g0522 673 FunFam Somatic embryogenesis receptor kinase 1 322 429 - -
Cco11g0522 673 MobiDBLite consensus disorder prediction 1 41 - -
Cco11g0522 673 ProSitePatterns Serine/Threonine protein kinases active-site signature. 472 484 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco11g0522 673 Gene3D Transferase(Phosphotransferase) domain 1 430 642 - -
Cco11g0522 673 SUPERFAMILY L domain-like 82 352 - -
Cco11g0522 673 Pfam Leucine rich repeat 172 231 IPR001611 GO:0005515(InterPro)
Cco11g0522 673 SUPERFAMILY Protein kinase-like (PK-like) 329 623 IPR011009 -
Cco11g0522 673 FunFam Putative LRR receptor-like serine/threonine-protein kinase 80 262 - -
Cco11g0522 673 ProSiteProfiles Protein kinase domain profile. 353 608 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco11g0522 673 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 60 673 - -
Cco11g0522 673 ProSitePatterns Protein kinases ATP-binding region signature. 359 381 IPR017441 GO:0005524(InterPro)
Cco11g0522 673 Pfam Leucine Rich Repeat 148 170 IPR001611 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2594 Cco-Chr5:34214658 Cco11g0522 Cco-Chr11:5505113 8.40E-227 dispersed
Cco11g0522 Cco-Chr11:5505113 Cco11g0541 Cco-Chr11:5714802 5.20E-73 dispersed
Cco01g0777 Cco-Chr1:8122579 Cco11g0522 Cco-Chr11:5505113 7.10E-218 transposed
Cco06g1462 Cco-Chr6:25088066 Cco11g0522 Cco-Chr11:5505113 5.30E-184 transposed
Cco08g1959 Cco-Chr8:30404864 Cco11g0522 Cco-Chr11:5505113 3.80E-186 transposed
Cco09g1677 Cco-Chr9:27767792 Cco11g0522 Cco-Chr11:5505113 1.90E-118 transposed
Cco10g0883 Cco-Chr10:18529458 Cco11g0522 Cco-Chr11:5505113 1.80E-129 transposed
Cco11g0522 Cco-Chr11:5505113 Cco11g1766 Cco-Chr11:30386896 8.90E-57 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87227 PF00069 Pkinase 8.80E-44 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g0522 - - - 0.0