Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco11g0541 | ATGGCTTCACCTTCTCCAAGTATTTCTCCTCCTGAGAATCCATCAGATTCCTCAGTTTCTTCACCTCCTTCTCCTTCTTCTCCGGTGGAGTCTGCAACCTCTCCCTCGTCTCCCACATCTTCTGAGCCTAATCAGACTGGTGAACCTCCTTCATCACTTTCTAGTTCTTCAGCTCCACCTCCTCAGTCACCACCAGCTGTTCCTGATGCTCCTCCTCCTTCTCCTCCATTGTCTCCTCCTCCATTGACAGCATCACCACCTGCAACACCAGCATCCCCACCTCCTCCTCCCCCTGCTGGTTCACCACCTTCACCTCCCCAATCTTCGCCCTTGCCGCCATCACCTCCGCCACCTTCAACACCATCCTCCCCACCACCACCACCACCTTCAACATCAACCTCTCCACCACCACCTTCAACAACATCACCACCACCTTCCTCTGCATCACCACCTCCCCCAGAGAGATCAACTACCTCTCCTCCTCCTCAAACTTCACCTCCCCCTCCTGATTTATCACCTCCGCCGCCACCAGCAGCAGCAGATGGTTCTCCACCTCCTGCATCCAATCCTAGACCTCCATCTTCAACGCCCTCTCCCCCTCCCCCTGATACAATTTCACCTTCTCCACCTCCACCAACTAATGTCCCAACACCACCTTCATCAACAGGAGAATCACCTAAAGTATCTCCCCCATCCCACAAGGCTTCTCCTCCTTCTGATTCTCAATCTCCACCTTCAGATAACTCCCCTCCACCAAGATCCACAGTACCATCACCTCCTTCTTCGGTTCCTTCATCGTCTGCTCCTCCTCCAGTTAGTGACCCTGGTTCTCCAACTAATTCATCTGGTGGAACTCCTGTTAGCCCTCCAACTTCTGTTACACCAGAACGACCAATTGCAACAATCAATGGTACCAATGTTACAGCAAACAACTCAACCACTAGCAAGGGGGGTTTCAGCACTGGAGCATCTGTGGCAGTTGGCAGTGTGGTTGGTGTTCTAGTGCTGAGTCTTGTTATCATGGCTCTGTGGTTTTTTCAGAAACGGAAGAGAAGAAAGAAGAATATCCCTTACACCATGGCTTCTCCTTTTTCCTCGCAAAACTCAGATTCCCTTTTCCTAAGGCCCCATTCTTCAGCTCCTGTAGTAGGAAGTCGTACTGATAGTGATTTCAAGTATTCATCATCGGAAGGAGGTGGAGTAGGTAATTCCAGATCGTTTGCTTATGATGACCTACACCAGGCAACAAGTGGGTTTTCATCGAATAATCTTTTGGGGGAAGGTGGATTTGGTTGTGTGTATAAAGGCACCCTTGCAGATGGAAGAGACGTGGCTGTTAAACAACTTAAAGTGGGTGGTGGACAGGGAGAACGAGAGTTCAGAGCCGAAGTTGAGATTATCAGCCGAGTACACCATCGACATTTGGTTTCCCTGGTTGGTTACTGTATCTCTGATTATCAAAGATTGCTTGTCTACGATTATGTTCCAAACAATACCCTTCATTACCATCTACACGGGGAGAACAGGCCAGTTTTGGCTTGGGCTACACGTGTTCGGATTGCTGCTGGTGCAGCTCGTGGAATTGCTTACCTACATGAAGATTGTCATCCACGCATTATTCACAGGGATATTAAATCGTCTAACATTCTGCTTGATATCAACTTTGAAGCTCAGGTTGCAGATTTTGGGCTTGCTAAATTGGCACTGGATTCACATACTCATGTAACAACTCGTGTTATGGGAACCTTTGGATACATGGCCCCAGAGTACGCAACGAGTGGGAAATTGACAGATAAATCTGATGTTTTCTCTTTCGGCGTTGTACTTTTGGAGTTAATTACTGGTCGCAAGCCTGTGGATTCTTCTCAGCCTCTAGGGGATGAGAGCTTAGTTGAATGGGCTCGACCCTTGCTTGCACAAGCCATTGAGGATGAGAATTTTGAAGAACTGGTGGATCCAAGGCTAGACAACAATTATGTAGACAGAGAAATGTTCCGGATGATCGAAGCAGCCGCTGCTTGTGTTCGTCATTCGGCAGTAAAGAGGCCAAGAATGAGTCAGGTGGTGAGAGCTCTAGACTCTTTAGATGAAATGTCAGATCTTGCAAATGGGGTGAAACCTGGGCAGAGTGGAGTGTTTGATTCAGCTGAACAATCTGCTCAGATTAGAATGTTTCAGAGAATGGCTTTTGGCAGTCAAGATTATAGTTACGGTTATTCCGACCGAGATCGCAGTCGAAGTTATAGTCAAAGTCATAGTAGCTGGAGTAGAGAATCCAGAGATCAAAGTCCCTCGGCGCCTATGAATCGATCCCGGCAATGGAACATCTGA | 2331 | 48.18 | MASPSPSISPPENPSDSSVSSPPSPSSPVESATSPSSPTSSEPNQTGEPPSSLSSSSAPPPQSPPAVPDAPPPSPPLSPPPLTASPPATPASPPPPPPAGSPPSPPQSSPLPPSPPPPSTPSSPPPPPPSTSTSPPPPSTTSPPPSSASPPPPERSTTSPPPQTSPPPPDLSPPPPPAAADGSPPPASNPRPPSSTPSPPPPDTISPSPPPPTNVPTPPSSTGESPKVSPPSHKASPPSDSQSPPSDNSPPPRSTVPSPPSSVPSSSAPPPVSDPGSPTNSSGGTPVSPPTSVTPERPIATINGTNVTANNSTTSKGGFSTGASVAVGSVVGVLVLSLVIMALWFFQKRKRRKKNIPYTMASPFSSQNSDSLFLRPHSSAPVVGSRTDSDFKYSSSEGGGVGNSRSFAYDDLHQATSGFSSNNLLGEGGFGCVYKGTLADGRDVAVKQLKVGGGQGEREFRAEVEIISRVHHRHLVSLVGYCISDYQRLLVYDYVPNNTLHYHLHGENRPVLAWATRVRIAAGAARGIAYLHEDCHPRIIHRDIKSSNILLDINFEAQVADFGLAKLALDSHTHVTTRVMGTFGYMAPEYATSGKLTDKSDVFSFGVVLLELITGRKPVDSSQPLGDESLVEWARPLLAQAIEDENFEELVDPRLDNNYVDREMFRMIEAAAACVRHSAVKRPRMSQVVRALDSLDEMSDLANGVKPGQSGVFDSAEQSAQIRMFQRMAFGSQDYSYGYSDRDRSRSYSQSHSSWSRESRDQSPSAPMNRSRQWNI | 776 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 5714802 | 5720721 | + | CcPI632755_11g005410.1 | Cco11g0541 | 191777 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco11g0541 | 776 | MobiDBLite | consensus disorder prediction | 738 | 776 | - | - | |
Cco11g0541 | 776 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 539 | 551 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco11g0541 | 776 | SUPERFAMILY | Protein kinase-like (PK-like) | 402 | 692 | IPR011009 | - | |
Cco11g0541 | 776 | SMART | serkin_6 | 419 | 675 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco11g0541 | 776 | MobiDBLite | consensus disorder prediction | 1 | 312 | - | - | |
Cco11g0541 | 776 | MobiDBLite | consensus disorder prediction | 226 | 242 | - | - | |
Cco11g0541 | 776 | Pfam | Protein tyrosine and serine/threonine kinase | 422 | 692 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco11g0541 | 776 | MobiDBLite | consensus disorder prediction | 749 | 776 | - | - | |
Cco11g0541 | 776 | MobiDBLite | consensus disorder prediction | 12 | 53 | - | - | |
Cco11g0541 | 776 | MobiDBLite | consensus disorder prediction | 243 | 276 | - | - | |
Cco11g0541 | 776 | MobiDBLite | consensus disorder prediction | 54 | 225 | - | - | |
Cco11g0541 | 776 | Gene3D | Transferase(Phosphotransferase) domain 1 | 495 | 707 | - | - | |
Cco11g0541 | 776 | CDD | STKc_IRAK | 425 | 695 | - | - | |
Cco11g0541 | 776 | Gene3D | Phosphorylase Kinase; domain 1 | 390 | 494 | - | - | |
Cco11g0541 | 776 | PANTHER | PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 | 301 | 728 | IPR047117 | - | |
Cco11g0541 | 776 | FunFam | Proline-rich receptor-like protein kinase PERK8 | 392 | 494 | - | - | |
Cco11g0541 | 776 | ProSiteProfiles | Protein kinase domain profile. | 419 | 680 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco11g0541 | 776 | ProSitePatterns | Protein kinases ATP-binding region signature. | 425 | 447 | IPR017441 | GO:0005524(InterPro) | |
Cco11g0541 | 776 | FunFam | proline-rich receptor-like protein kinase PERK8 | 495 | 707 | - | - | |
Cco11g0541 | 776 | MobiDBLite | consensus disorder prediction | 277 | 312 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco02g2275 | Cco-Chr2:35325850 | Cco11g0541 | Cco-Chr11:5714802 | 1.40E-65 | dispersed | |
Cco05g2590 | Cco-Chr5:34157701 | Cco11g0541 | Cco-Chr11:5714802 | 5.90E-147 | dispersed | |
Cco06g0325 | Cco-Chr6:3635765 | Cco11g0541 | Cco-Chr11:5714802 | 6.50E-66 | dispersed | |
Cco06g1495 | Cco-Chr6:25469148 | Cco11g0541 | Cco-Chr11:5714802 | 1.20E-77 | dispersed | |
Cco08g0770 | Cco-Chr8:19500081 | Cco11g0541 | Cco-Chr11:5714802 | 3.70E-63 | dispersed | |
Cco09g2451 | Cco-Chr9:38678000 | Cco11g0541 | Cco-Chr11:5714802 | 1.80E-78 | dispersed | |
Cco10g2277 | Cco-Chr10:35617199 | Cco11g0541 | Cco-Chr11:5714802 | 1.40E-71 | dispersed | |
Cco11g0107 | Cco-Chr11:1152940 | Cco11g0541 | Cco-Chr11:5714802 | 8.30E-72 | dispersed | |
Cco11g0459 | Cco-Chr11:4829412 | Cco11g0541 | Cco-Chr11:5714802 | 4.40E-123 | dispersed | |
Cco11g0522 | Cco-Chr11:5505113 | Cco11g0541 | Cco-Chr11:5714802 | 5.20E-73 | dispersed | |
Cco11g1346 | Cco-Chr11:26276789 | Cco11g0541 | Cco-Chr11:5714802 | 3.70E-65 | dispersed | |
Cco05g2803 | Cco-Chr5:35769121 | Cco11g0541 | Cco-Chr11:5714802 | 9.70E-140 | transposed | |
Cco11g1391 | Cco-Chr11:26703081 | Cco11g0541 | Cco-Chr11:5714802 | 4.40E-44 | transposed | |
Cco11g0541 | Cco-Chr11:5714802 | Cco11g1781 | Cco-Chr11:30512746 | 6.40E-67 | wgd | |
Cco11g0541 | Cco-Chr11:5714802 | Cco07g1705 | Cco-Chr7:31052254 | 2.50E-59 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
87228 | PF07714 | PK_Tyr_Ser-Thr | 1.30E-45 | CL0016 | Cco | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco11g0541 | - | - | - | 0.0 |