Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g0541 ATGGCTTCACCTTCTCCAAGTATTTCTCCTCCTGAGAATCCATCAGATTCCTCAGTTTCTTCACCTCCTTCTCCTTCTTCTCCGGTGGAGTCTGCAACCTCTCCCTCGTCTCCCACATCTTCTGAGCCTAATCAGACTGGTGAACCTCCTTCATCACTTTCTAGTTCTTCAGCTCCACCTCCTCAGTCACCACCAGCTGTTCCTGATGCTCCTCCTCCTTCTCCTCCATTGTCTCCTCCTCCATTGACAGCATCACCACCTGCAACACCAGCATCCCCACCTCCTCCTCCCCCTGCTGGTTCACCACCTTCACCTCCCCAATCTTCGCCCTTGCCGCCATCACCTCCGCCACCTTCAACACCATCCTCCCCACCACCACCACCACCTTCAACATCAACCTCTCCACCACCACCTTCAACAACATCACCACCACCTTCCTCTGCATCACCACCTCCCCCAGAGAGATCAACTACCTCTCCTCCTCCTCAAACTTCACCTCCCCCTCCTGATTTATCACCTCCGCCGCCACCAGCAGCAGCAGATGGTTCTCCACCTCCTGCATCCAATCCTAGACCTCCATCTTCAACGCCCTCTCCCCCTCCCCCTGATACAATTTCACCTTCTCCACCTCCACCAACTAATGTCCCAACACCACCTTCATCAACAGGAGAATCACCTAAAGTATCTCCCCCATCCCACAAGGCTTCTCCTCCTTCTGATTCTCAATCTCCACCTTCAGATAACTCCCCTCCACCAAGATCCACAGTACCATCACCTCCTTCTTCGGTTCCTTCATCGTCTGCTCCTCCTCCAGTTAGTGACCCTGGTTCTCCAACTAATTCATCTGGTGGAACTCCTGTTAGCCCTCCAACTTCTGTTACACCAGAACGACCAATTGCAACAATCAATGGTACCAATGTTACAGCAAACAACTCAACCACTAGCAAGGGGGGTTTCAGCACTGGAGCATCTGTGGCAGTTGGCAGTGTGGTTGGTGTTCTAGTGCTGAGTCTTGTTATCATGGCTCTGTGGTTTTTTCAGAAACGGAAGAGAAGAAAGAAGAATATCCCTTACACCATGGCTTCTCCTTTTTCCTCGCAAAACTCAGATTCCCTTTTCCTAAGGCCCCATTCTTCAGCTCCTGTAGTAGGAAGTCGTACTGATAGTGATTTCAAGTATTCATCATCGGAAGGAGGTGGAGTAGGTAATTCCAGATCGTTTGCTTATGATGACCTACACCAGGCAACAAGTGGGTTTTCATCGAATAATCTTTTGGGGGAAGGTGGATTTGGTTGTGTGTATAAAGGCACCCTTGCAGATGGAAGAGACGTGGCTGTTAAACAACTTAAAGTGGGTGGTGGACAGGGAGAACGAGAGTTCAGAGCCGAAGTTGAGATTATCAGCCGAGTACACCATCGACATTTGGTTTCCCTGGTTGGTTACTGTATCTCTGATTATCAAAGATTGCTTGTCTACGATTATGTTCCAAACAATACCCTTCATTACCATCTACACGGGGAGAACAGGCCAGTTTTGGCTTGGGCTACACGTGTTCGGATTGCTGCTGGTGCAGCTCGTGGAATTGCTTACCTACATGAAGATTGTCATCCACGCATTATTCACAGGGATATTAAATCGTCTAACATTCTGCTTGATATCAACTTTGAAGCTCAGGTTGCAGATTTTGGGCTTGCTAAATTGGCACTGGATTCACATACTCATGTAACAACTCGTGTTATGGGAACCTTTGGATACATGGCCCCAGAGTACGCAACGAGTGGGAAATTGACAGATAAATCTGATGTTTTCTCTTTCGGCGTTGTACTTTTGGAGTTAATTACTGGTCGCAAGCCTGTGGATTCTTCTCAGCCTCTAGGGGATGAGAGCTTAGTTGAATGGGCTCGACCCTTGCTTGCACAAGCCATTGAGGATGAGAATTTTGAAGAACTGGTGGATCCAAGGCTAGACAACAATTATGTAGACAGAGAAATGTTCCGGATGATCGAAGCAGCCGCTGCTTGTGTTCGTCATTCGGCAGTAAAGAGGCCAAGAATGAGTCAGGTGGTGAGAGCTCTAGACTCTTTAGATGAAATGTCAGATCTTGCAAATGGGGTGAAACCTGGGCAGAGTGGAGTGTTTGATTCAGCTGAACAATCTGCTCAGATTAGAATGTTTCAGAGAATGGCTTTTGGCAGTCAAGATTATAGTTACGGTTATTCCGACCGAGATCGCAGTCGAAGTTATAGTCAAAGTCATAGTAGCTGGAGTAGAGAATCCAGAGATCAAAGTCCCTCGGCGCCTATGAATCGATCCCGGCAATGGAACATCTGA 2331 48.18 MASPSPSISPPENPSDSSVSSPPSPSSPVESATSPSSPTSSEPNQTGEPPSSLSSSSAPPPQSPPAVPDAPPPSPPLSPPPLTASPPATPASPPPPPPAGSPPSPPQSSPLPPSPPPPSTPSSPPPPPPSTSTSPPPPSTTSPPPSSASPPPPERSTTSPPPQTSPPPPDLSPPPPPAAADGSPPPASNPRPPSSTPSPPPPDTISPSPPPPTNVPTPPSSTGESPKVSPPSHKASPPSDSQSPPSDNSPPPRSTVPSPPSSVPSSSAPPPVSDPGSPTNSSGGTPVSPPTSVTPERPIATINGTNVTANNSTTSKGGFSTGASVAVGSVVGVLVLSLVIMALWFFQKRKRRKKNIPYTMASPFSSQNSDSLFLRPHSSAPVVGSRTDSDFKYSSSEGGGVGNSRSFAYDDLHQATSGFSSNNLLGEGGFGCVYKGTLADGRDVAVKQLKVGGGQGEREFRAEVEIISRVHHRHLVSLVGYCISDYQRLLVYDYVPNNTLHYHLHGENRPVLAWATRVRIAAGAARGIAYLHEDCHPRIIHRDIKSSNILLDINFEAQVADFGLAKLALDSHTHVTTRVMGTFGYMAPEYATSGKLTDKSDVFSFGVVLLELITGRKPVDSSQPLGDESLVEWARPLLAQAIEDENFEELVDPRLDNNYVDREMFRMIEAAAACVRHSAVKRPRMSQVVRALDSLDEMSDLANGVKPGQSGVFDSAEQSAQIRMFQRMAFGSQDYSYGYSDRDRSRSYSQSHSSWSRESRDQSPSAPMNRSRQWNI 776
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5714802 5720721 + CcPI632755_11g005410.1 Cco11g0541 191777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g0541 776 MobiDBLite consensus disorder prediction 738 776 - -
Cco11g0541 776 ProSitePatterns Serine/Threonine protein kinases active-site signature. 539 551 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco11g0541 776 SUPERFAMILY Protein kinase-like (PK-like) 402 692 IPR011009 -
Cco11g0541 776 SMART serkin_6 419 675 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco11g0541 776 MobiDBLite consensus disorder prediction 1 312 - -
Cco11g0541 776 MobiDBLite consensus disorder prediction 226 242 - -
Cco11g0541 776 Pfam Protein tyrosine and serine/threonine kinase 422 692 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco11g0541 776 MobiDBLite consensus disorder prediction 749 776 - -
Cco11g0541 776 MobiDBLite consensus disorder prediction 12 53 - -
Cco11g0541 776 MobiDBLite consensus disorder prediction 243 276 - -
Cco11g0541 776 MobiDBLite consensus disorder prediction 54 225 - -
Cco11g0541 776 Gene3D Transferase(Phosphotransferase) domain 1 495 707 - -
Cco11g0541 776 CDD STKc_IRAK 425 695 - -
Cco11g0541 776 Gene3D Phosphorylase Kinase; domain 1 390 494 - -
Cco11g0541 776 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 301 728 IPR047117 -
Cco11g0541 776 FunFam Proline-rich receptor-like protein kinase PERK8 392 494 - -
Cco11g0541 776 ProSiteProfiles Protein kinase domain profile. 419 680 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco11g0541 776 ProSitePatterns Protein kinases ATP-binding region signature. 425 447 IPR017441 GO:0005524(InterPro)
Cco11g0541 776 FunFam proline-rich receptor-like protein kinase PERK8 495 707 - -
Cco11g0541 776 MobiDBLite consensus disorder prediction 277 312 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g2275 Cco-Chr2:35325850 Cco11g0541 Cco-Chr11:5714802 1.40E-65 dispersed
Cco05g2590 Cco-Chr5:34157701 Cco11g0541 Cco-Chr11:5714802 5.90E-147 dispersed
Cco06g0325 Cco-Chr6:3635765 Cco11g0541 Cco-Chr11:5714802 6.50E-66 dispersed
Cco06g1495 Cco-Chr6:25469148 Cco11g0541 Cco-Chr11:5714802 1.20E-77 dispersed
Cco08g0770 Cco-Chr8:19500081 Cco11g0541 Cco-Chr11:5714802 3.70E-63 dispersed
Cco09g2451 Cco-Chr9:38678000 Cco11g0541 Cco-Chr11:5714802 1.80E-78 dispersed
Cco10g2277 Cco-Chr10:35617199 Cco11g0541 Cco-Chr11:5714802 1.40E-71 dispersed
Cco11g0107 Cco-Chr11:1152940 Cco11g0541 Cco-Chr11:5714802 8.30E-72 dispersed
Cco11g0459 Cco-Chr11:4829412 Cco11g0541 Cco-Chr11:5714802 4.40E-123 dispersed
Cco11g0522 Cco-Chr11:5505113 Cco11g0541 Cco-Chr11:5714802 5.20E-73 dispersed
Cco11g1346 Cco-Chr11:26276789 Cco11g0541 Cco-Chr11:5714802 3.70E-65 dispersed
Cco05g2803 Cco-Chr5:35769121 Cco11g0541 Cco-Chr11:5714802 9.70E-140 transposed
Cco11g1391 Cco-Chr11:26703081 Cco11g0541 Cco-Chr11:5714802 4.40E-44 transposed
Cco11g0541 Cco-Chr11:5714802 Cco11g1781 Cco-Chr11:30512746 6.40E-67 wgd
Cco11g0541 Cco-Chr11:5714802 Cco07g1705 Cco-Chr7:31052254 2.50E-59 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87228 PF07714 PK_Tyr_Ser-Thr 1.30E-45 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g0541 - - - 0.0