Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco11g0560 | ATGTTGCCACTCCTTACAACTTTAGCTTTCCTAACGACGTCGTTTTTCATCTTCTCTTTATTATACGACACCGTTTCTTGCTACTGGTTCACTCCTAGACGCATCAAGAAGAAGATGGCAAAGCAAGGTGTTCATGGCCCTAAACCCCGCCCTCTCCTCGGCAACATCCTCGACGTCGCCGCCCTCCTCTCCAAATCCACCTCCTCCGACATGCCCTCCATCTCTCACGACCTCGTCCCCCGTCTCCTCCCTCATTTCCTCGCCTGGTCCACCCAATTCGGGAAGAGATTTATATTTTGGAATGGGATTGAGCCGAGAATGTGTCTAACAGAAACGGATTTGATAAAAGAGCTTTTGTCAAAATACAGTGCGGTTTCGGGAAAGTCATGGCTCCAACAACAAGGCTCTAAGCACTTTATTGGGCGAGGTCTTTTAATGGCCAACGGCCAAAATTGGTTCCATCAACGCCATATTGTCGCGCCGGCTTTCGTCGGGGATCGACTTAAGAGTTACGCGGGGTATATGGTGGAGTGCACAAAGGAGATGCTTGAATCAATAGAAAATGAGGTAAAATCGGGGCGATCAGAGTTTGAAATCGGCGAGTATATGACTAGACTCACTGCTGATATAATTTCAAGAACCGAGTTTGAAAGCAGCTACGAAAAGGGAAAACAAATCTTTGATTTACTTACTGTTTTACAGCATCTTTGTGCCCAGGCCAGCCGCCACCTCTGCCTTCCCGGTAGCCGGTTTTTTCCAAGTAAATATAACAGAGAGATAAAGGCATTGAAAGGGAAAGTGGAGGAGTTGTTAATGGAGATAATACAGAGTAGAAGGGATTGTGTGGAAATTGGAAGAAGCAGTTCATATGGAAATGATTTATTGGGAATGTTGCTAAATGAAATGCAAAAGAAAAAAGATGGGAATGGTTTGAGTTTGAATTTGCAAATTATAATGGATGAATGCAAAACCTTCTTCTTTGCTGGCCATGAAACCACTGCCCTTTTGCTCACTTGGACTGTCATGTTATTAGCCACTAACCCTTCTTGGCAACACAAGGTTCGAGCCGAAGTTATGACCATTTGCGGTTCTCAAACGCCTTCCTTTCATCATCTTTCCAAACTCTCCCTGTTGAGTATGGTGATAAATGAATCACTAAGACTATACCCACCAGCAAGTATTCTTCCAAGGATGGCATTTGAAGATATAAAACTTGGAGATTTAGAGATCCCAAAAGGCTTATCAATATGGATTCCAGTGTTAGCCATTCATCATAGTGAAGAATTATGGGGAAAAGATGCAAATGAGTTCAATCCAGAAAGATTTGCCAATTCAAAAGCTTTTACTTCTGGTGGATTCATCCCTTTTGCTTCTGGCCCTCGCAACTGTGTTGGCCAATCTTTTGCTCTTATGGAAACTAAGATCATCTTGGCTATGCTCATCTCCAAATTTAGCTTCACCATCTCAGATAATTATCGGCATGCACCCATCGTCGTACTCACCATAAAACCTAAATACGGTGTTCAAGTTTACTTGAAGTCTTTGAATTAA | 1551 | 43.07 | MLPLLTTLAFLTTSFFIFSLLYDTVSCYWFTPRRIKKKMAKQGVHGPKPRPLLGNILDVAALLSKSTSSDMPSISHDLVPRLLPHFLAWSTQFGKRFIFWNGIEPRMCLTETDLIKELLSKYSAVSGKSWLQQQGSKHFIGRGLLMANGQNWFHQRHIVAPAFVGDRLKSYAGYMVECTKEMLESIENEVKSGRSEFEIGEYMTRLTADIISRTEFESSYEKGKQIFDLLTVLQHLCAQASRHLCLPGSRFFPSKYNREIKALKGKVEELLMEIIQSRRDCVEIGRSSSYGNDLLGMLLNEMQKKKDGNGLSLNLQIIMDECKTFFFAGHETTALLLTWTVMLLATNPSWQHKVRAEVMTICGSQTPSFHHLSKLSLLSMVINESLRLYPPASILPRMAFEDIKLGDLEIPKGLSIWIPVLAIHHSEELWGKDANEFNPERFANSKAFTSGGFIPFASGPRNCVGQSFALMETKIILAMLISKFSFTISDNYRHAPIVVLTIKPKYGVQVYLKSLN | 516 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 5979096 | 5982791 | + | CcPI632755_11g005600.1 | Cco11g0560 | 191796 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco11g0560 | 516 | CDD | CYP72_clan | 83 | 509 | - | - | |
| Cco11g0560 | 516 | PANTHER | CYTOCHROME P450 FAMILY MEMBER | 15 | 508 | IPR050665 | GO:0004497(PANTHER) | |
| Cco11g0560 | 516 | PRINTS | E-class P450 group I signature | 90 | 109 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco11g0560 | 516 | PRINTS | E-class P450 group I signature | 317 | 334 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco11g0560 | 516 | PRINTS | E-class P450 group I signature | 453 | 463 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco11g0560 | 516 | PRINTS | E-class P450 group I signature | 463 | 486 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco11g0560 | 516 | PRINTS | E-class P450 group I signature | 420 | 444 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco11g0560 | 516 | PRINTS | E-class P450 group I signature | 206 | 224 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco11g0560 | 516 | PRINTS | E-class P450 group I signature | 337 | 363 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco11g0560 | 516 | SUPERFAMILY | Cytochrome P450 | 46 | 513 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco11g0560 | 516 | Pfam | Cytochrome P450 | 90 | 490 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco11g0560 | 516 | Gene3D | Cytochrome P450 | 28 | 515 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco11g0560 | 516 | Coils | Coil | 260 | 280 | - | - | |
| Cco11g0560 | 516 | Coils | Coil | 176 | 196 | - | - | |
| Cco11g0560 | 516 | PRINTS | P450 superfamily signature | 380 | 391 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco11g0560 | 516 | PRINTS | P450 superfamily signature | 463 | 474 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco11g0560 | 516 | PRINTS | P450 superfamily signature | 454 | 463 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco11g0560 | 516 | PRINTS | P450 superfamily signature | 328 | 345 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco01g0469 | Cco-Chr1:4582305 | Cco11g0560 | Cco-Chr11:5979096 | 2.10E-81 | dispersed | |
| Cco06g0836 | Cco-Chr6:10074535 | Cco11g0560 | Cco-Chr11:5979096 | 6.90E-86 | dispersed | |
| Cco11g0560 | Cco-Chr11:5979096 | Cco11g1761 | Cco-Chr11:30353230 | 6.10E-90 | dispersed | |
| Cco05g1351 | Cco-Chr5:14372675 | Cco11g0560 | Cco-Chr11:5979096 | 2.20E-233 | transposed | |
| Cco11g0560 | Cco-Chr11:5979096 | Cco07g0560 | Cco-Chr7:7274832 | 5.20E-89 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco11g0560 | K10717 | - | csv:101215037 | 962.985 |