Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g0573 ATGGCGGTCGCTTTCCATGATGTCAAGTCTGCAGCCGGTTTGAAAAAACTCGATGAATACTTGCTTAGTCGTAGCTACATTTCCGGGTATCAGCCTTCAAAGGATGATGTTACCGTTTATGAAGCGATCTCCAAACCCGTCTCCAGTGAATATGTTAACGTGTCTAGGTGGAGTAATCACATTGAAGCACTCTTGAGAGTTTCCGCTGTTTTTGGAGAGGGTTCTGGTGTTAAGTTCGATGCAGTTGCAACCCCACCAGCTGCAGATGCAAAGGCTGCCGATGACGATGACGACGACGACGACATGGACCTGTTTGGTGAAGAGACCGAAGAGGAAAAGAAGGCTGCTGAAGAGCGTGCAGCTGCCATTAAGGCTTCTGCAAAGAAGAAAGAGAGTGGCAAATCATCAGTTCTGATGGACATCAAACCTTGGGATGACGAAACTGACATGAAGAAACTTGAAGAGGCTGTAAGAAGCGTTCAGATGGAAGGCTTGCTTTGGGGAGCATCGAAACTCGTCCCTGTTGGATATGGTATTAAGAAATTGCAGATAATGCTCACAATTGTTGATGACCTTGTAGCTGTGACATCGTGGCCTTCAACAAAATATAACTTCTGTTCGTCAGAACCAAAGACAGCTGGTTTCAAAGATGTTGCTGAGTCTGAGGAAGATGTTTAG 678 45.72 MAVAFHDVKSAAGLKKLDEYLLSRSYISGYQPSKDDVTVYEAISKPVSSEYVNVSRWSNHIEALLRVSAVFGEGSGVKFDAVATPPAADAKAADDDDDDDDMDLFGEETEEEKKAAEERAAAIKASAKKKESGKSSVLMDIKPWDDETDMKKLEEAVRSVQMEGLLWGASKLVPVGYGIKKLQIMLTIVDDLVAVTSWPSTKYNFCSSEPKTAGFKDVAESEEDV 225
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6138301 6140049 + CcPI632755_11g005730.1 Cco11g0573 191809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g0573 225 Pfam EF-1 guanine nucleotide exchange domain 136 195 IPR014038 GO:0003746(InterPro)|GO:0006414(InterPro)
Cco11g0573 225 Coils Coil 106 126 - -
Cco11g0573 225 FunFam Elongation factor 1-delta 1 3 78 - -
Cco11g0573 225 SUPERFAMILY GST C-terminal domain-like 9 69 IPR036282 -
Cco11g0573 225 FunFam Elongation factor 1-beta 1 like 128 206 - -
Cco11g0573 225 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 1. 98 106 IPR001326 GO:0003746(InterPro)|GO:0006414(InterPro)
Cco11g0573 225 Gene3D - 127 213 IPR014717 -
Cco11g0573 225 PANTHER EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER 1 195 IPR049720 GO:0003746(InterPro)|GO:0005085(PANTHER)|GO:0005829(PANTHER)|GO:0005853(InterPro)|GO:0006414(PANTHER)
Cco11g0573 225 MobiDBLite consensus disorder prediction 92 107 - -
Cco11g0573 225 Gene3D - 3 75 - -
Cco11g0573 225 SMART EF1_GNE_2 134 224 IPR014038 GO:0003746(InterPro)|GO:0006414(InterPro)
Cco11g0573 225 SUPERFAMILY eEF-1beta-like 131 196 IPR036219 -
Cco11g0573 225 MobiDBLite consensus disorder prediction 86 111 - -
Cco11g0573 225 CDD EF1B 132 193 IPR014038 GO:0003746(InterPro)|GO:0006414(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0369 Cco-Chr3:4018589 Cco11g0573 Cco-Chr11:6138301 2.20E-72 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g0573 K03232 - csv:101215827 290.426