Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco11g0573 | ATGGCGGTCGCTTTCCATGATGTCAAGTCTGCAGCCGGTTTGAAAAAACTCGATGAATACTTGCTTAGTCGTAGCTACATTTCCGGGTATCAGCCTTCAAAGGATGATGTTACCGTTTATGAAGCGATCTCCAAACCCGTCTCCAGTGAATATGTTAACGTGTCTAGGTGGAGTAATCACATTGAAGCACTCTTGAGAGTTTCCGCTGTTTTTGGAGAGGGTTCTGGTGTTAAGTTCGATGCAGTTGCAACCCCACCAGCTGCAGATGCAAAGGCTGCCGATGACGATGACGACGACGACGACATGGACCTGTTTGGTGAAGAGACCGAAGAGGAAAAGAAGGCTGCTGAAGAGCGTGCAGCTGCCATTAAGGCTTCTGCAAAGAAGAAAGAGAGTGGCAAATCATCAGTTCTGATGGACATCAAACCTTGGGATGACGAAACTGACATGAAGAAACTTGAAGAGGCTGTAAGAAGCGTTCAGATGGAAGGCTTGCTTTGGGGAGCATCGAAACTCGTCCCTGTTGGATATGGTATTAAGAAATTGCAGATAATGCTCACAATTGTTGATGACCTTGTAGCTGTGACATCGTGGCCTTCAACAAAATATAACTTCTGTTCGTCAGAACCAAAGACAGCTGGTTTCAAAGATGTTGCTGAGTCTGAGGAAGATGTTTAG | 678 | 45.72 | MAVAFHDVKSAAGLKKLDEYLLSRSYISGYQPSKDDVTVYEAISKPVSSEYVNVSRWSNHIEALLRVSAVFGEGSGVKFDAVATPPAADAKAADDDDDDDDMDLFGEETEEEKKAAEERAAAIKASAKKKESGKSSVLMDIKPWDDETDMKKLEEAVRSVQMEGLLWGASKLVPVGYGIKKLQIMLTIVDDLVAVTSWPSTKYNFCSSEPKTAGFKDVAESEEDV | 225 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 6138301 | 6140049 | + | CcPI632755_11g005730.1 | Cco11g0573 | 191809 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco11g0573 | 225 | Pfam | EF-1 guanine nucleotide exchange domain | 136 | 195 | IPR014038 | GO:0003746(InterPro)|GO:0006414(InterPro) | |
Cco11g0573 | 225 | Coils | Coil | 106 | 126 | - | - | |
Cco11g0573 | 225 | FunFam | Elongation factor 1-delta 1 | 3 | 78 | - | - | |
Cco11g0573 | 225 | SUPERFAMILY | GST C-terminal domain-like | 9 | 69 | IPR036282 | - | |
Cco11g0573 | 225 | FunFam | Elongation factor 1-beta 1 like | 128 | 206 | - | - | |
Cco11g0573 | 225 | ProSitePatterns | Elongation factor 1 beta/beta'/delta chain signature 1. | 98 | 106 | IPR001326 | GO:0003746(InterPro)|GO:0006414(InterPro) | |
Cco11g0573 | 225 | Gene3D | - | 127 | 213 | IPR014717 | - | |
Cco11g0573 | 225 | PANTHER | EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER | 1 | 195 | IPR049720 | GO:0003746(InterPro)|GO:0005085(PANTHER)|GO:0005829(PANTHER)|GO:0005853(InterPro)|GO:0006414(PANTHER) | |
Cco11g0573 | 225 | MobiDBLite | consensus disorder prediction | 92 | 107 | - | - | |
Cco11g0573 | 225 | Gene3D | - | 3 | 75 | - | - | |
Cco11g0573 | 225 | SMART | EF1_GNE_2 | 134 | 224 | IPR014038 | GO:0003746(InterPro)|GO:0006414(InterPro) | |
Cco11g0573 | 225 | SUPERFAMILY | eEF-1beta-like | 131 | 196 | IPR036219 | - | |
Cco11g0573 | 225 | MobiDBLite | consensus disorder prediction | 86 | 111 | - | - | |
Cco11g0573 | 225 | CDD | EF1B | 132 | 193 | IPR014038 | GO:0003746(InterPro)|GO:0006414(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco03g0369 | Cco-Chr3:4018589 | Cco11g0573 | Cco-Chr11:6138301 | 2.20E-72 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco11g0573 | K03232 | - | csv:101215827 | 290.426 |