Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g0578 ATGAAAAGGCTACTGGGGTTGTTCTTCTTGTTCGTTGTGGTTCCAGTGTTGGTGAGATCTCTGAACCCACCTCTGAACGACGACGTTTTAGGGCTGATTGTGTTCAAGGCTGACATTGAAGATCCTAAAGGGAAACTTGCTTCGTGGAATGAAGATGACGATAACCCATGTAATTGGGTTGGTGTAAAATGCAACCCCAGATCCAATAGAGTTGTTGAGCTCAATCTTGATGGCTTCTCTCTCAATGGCAGGCTTGGCCGTGGTCTTCTTCAGTTGCAGTTTCTTCGTAAACTCTCTCTTTCGAACAACAATCTTACTGGAAATTTAAGTCCTAATAATGCTCGCTTTGAAAATCTTCGAGTGGTCGATTTAAGCGGCAACGGTTTTCATGGGATGATTCCGGATGATTTCTTCCGGCAATGTGGGTCGTTGAGAGTAATCTCTTTGGCTAAGAACAAATTTTCAGGGAAAATCCCGGAAAGTTTGGGCTCTTGTTCCAGTCTTGCTGCTGTTAATTTGTCTTCCAATCAGTTTTCAGGTTCATTGCCTTCTGGGATTTGGTCCTTGACCGGGCTTCGATCTTTGGATTTGTCTGATAATGTGTTAGAAGGTGAAATTCCACCGGAAGTGAAGGGTATGAATAATTTGCGAGCTATTAATTTGGGGAAGAATCGGTTTTCTGGACAGATCCCAGATGGGATTGGGAGTTGTTTGCTCTTGAGGTCTGTTGATCTCAGTGAGAATTCTTTCTCCGGCGATGTTCCGGCGACAATGCAGAAGCTTAGTTTATGCAGTACTCTTAATTTAAGAAGAAACTCATTTGAAGGGAAGGTTCCTGAATGGATTGGTGGAATGGATGGCCTTGAAATCTTGGACCTTTCTGGGAATAGATTTTCTGGTCCGGTTCCAAGTTCATTTGGGAATCTTCAAAAACTGAAGGTTTTGAATATTTCTGAAAATGGTTTAACTGGTAGCTTGGCTGAATCCATACTTCCTTCTCAAAACCTTTCAGCCATGGAGCCCGGCCGCGGTTCTCTCACTGGTGTTCTTCCAGCCTGGATTCTGAAGCTGGGTTCGCAAAATGTATTGCCTTCTGATATCAAAAGAAGCTCTCTTTCTACAACTGTGGGAAAAGCTCTTGTTAATCTTCAAGTTTTAGATTTGTCTCACAATGCACTTTCTGGTGAAATTTCACCTGATATTGGGATATTAAGTAACTTGCAGGTGTTAAACCTGTGTAAGAACTTATTTGTTGGGACTATTCCAGAGAGTATTGGAGGCTTGAAGGCCTTGGTTTTTCTTGACTTGAGTGAGAACCAGTTGAATGGAACCATTCCCGAAACACTCGGCGGAGACATATCATTGAAAGAAGTGAGACTGGAGAAGAACTTGCTGGAGGGTGAAGTTCCAAAATCAATTGGGAACTGTTCTTCTCTTGTAAATTTGGACATATCGGAAAACAGATTAACTGGCTCCATACCAGCAGAATTGTCTCAACTGATCAATCTTCAAATCGTGGACTTGTCAACAAACAATCTCAGTGGTGCACTGCCAAAACAGTTGGCCAATCTTCCTAACCTTCTTTTGTTTAACATTTCTCACAACAATCTGCAAGGCGAACTGCCTGCAGGTGGCTTTTTCAATACAATCTCTCCTTCCTCTGTGGCTGGAAATCCTTCCATTTGTGGTTCTATTGTCAAGAAGTCTTGCCCTGGCGTCCTTCCAAAGCCTATTGTTCTCAATCCCAACTCATCTTCTGACTCTGGTTCTCCTTCATTACCTTCAACTCTTGGTCACAAAAGAATCATCCTCAGCATCTCTGCACTCATTGCTATTGGTGCAGCTGCTGTTATCCTCGTCGGTGTAGTTGCAATCACCGTCATTAACCTCCATGTTCGATCGTCTGCAAATCGTCCTGAAGCAGCCATCACGTTCTCAGGAGGGGATGACTTCAGCCACTCCCCAACTACGGATGCTAATTCTGGCAAGCTCGTCATGTTCTCGGGAGAGCCTGACTTTAGTACCGGTGCACATGCCCTCCTTAACAAGGATTGCGAGCTTGGCCGTGGAGGATTTGGAGCGGTTTACCAGACTGTTCTTCGTGATGGGCATCCGGTTGCAATAAAAAAGCTCACCGTTTCAAGTCTTGTCAAGTCTCAAGAAGAGTTTGAAAGGGAGGTTAAGAAGTTGGGGAAGGTTAGGCACCAAAATCTTGTGGCTCTGGAAGGTTATTACTGGACACCATCTCTACAGCTCCTCATATATGAATTTGTTTCTGGAGGGAGTTTGTATAAACAGCTTCATGAAGGATTGAGTGGAAACATCCTCTCATGGAATGAAAGGTTCAACATAATCCTTGGAACTGCGAAAAGCTTGGCACATTTGCACCAAATGAACATCATCCACTACAATATAAAATCAAGCAATGTCCTGATTGATAGTTCAGGCGAAGCTAAAGTTGGAGATTTTGGCCTAGCAAGATTGTTACCAATGCTTGATCGGTACGTGTTGAGCAGCAAGATACAGAGCGCACTTGGATACATGGCACCCGAGTTTGCCTGCAAAACAGTTAAGATAACAGAGAAATGTGATGTGTATGGGTTTGGAGTTCTGGTTCTTGAGGTGGTAACTGGTAAGAGACCTGTAGAGTACATGGAAGACGACGTGGTGGTACTCTGCGACATGGTTCGACGGGCGCTGGAAGAAGGTCGGGTAGAGGAATGCATTGATGGGAGGCTCCAGAGGAATTTTCCATCAGAGGAGGCCATACCAGTAGTGAAACTAGGCTTGATTTGCACTTCTCAGGTGCCATCAAACCGACCTGATATGGCAGAGGTTGTTAATATATTAGAGCTTATCAGATGTCCATCAGAAGGCCAAGAAGAATTGGGATAA 2895 44.04 MKRLLGLFFLFVVVPVLVRSLNPPLNDDVLGLIVFKADIEDPKGKLASWNEDDDNPCNWVGVKCNPRSNRVVELNLDGFSLNGRLGRGLLQLQFLRKLSLSNNNLTGNLSPNNARFENLRVVDLSGNGFHGMIPDDFFRQCGSLRVISLAKNKFSGKIPESLGSCSSLAAVNLSSNQFSGSLPSGIWSLTGLRSLDLSDNVLEGEIPPEVKGMNNLRAINLGKNRFSGQIPDGIGSCLLLRSVDLSENSFSGDVPATMQKLSLCSTLNLRRNSFEGKVPEWIGGMDGLEILDLSGNRFSGPVPSSFGNLQKLKVLNISENGLTGSLAESILPSQNLSAMEPGRGSLTGVLPAWILKLGSQNVLPSDIKRSSLSTTVGKALVNLQVLDLSHNALSGEISPDIGILSNLQVLNLCKNLFVGTIPESIGGLKALVFLDLSENQLNGTIPETLGGDISLKEVRLEKNLLEGEVPKSIGNCSSLVNLDISENRLTGSIPAELSQLINLQIVDLSTNNLSGALPKQLANLPNLLLFNISHNNLQGELPAGGFFNTISPSSVAGNPSICGSIVKKSCPGVLPKPIVLNPNSSSDSGSPSLPSTLGHKRIILSISALIAIGAAAVILVGVVAITVINLHVRSSANRPEAAITFSGGDDFSHSPTTDANSGKLVMFSGEPDFSTGAHALLNKDCELGRGGFGAVYQTVLRDGHPVAIKKLTVSSLVKSQEEFEREVKKLGKVRHQNLVALEGYYWTPSLQLLIYEFVSGGSLYKQLHEGLSGNILSWNERFNIILGTAKSLAHLHQMNIIHYNIKSSNVLIDSSGEAKVGDFGLARLLPMLDRYVLSSKIQSALGYMAPEFACKTVKITEKCDVYGFGVLVLEVVTGKRPVEYMEDDVVVLCDMVRRALEEGRVEECIDGRLQRNFPSEEAIPVVKLGLICTSQVPSNRPDMAEVVNILELIRCPSEGQEELG 964
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6196314 6199429 + CcPI632755_11g005780.1 Cco11g0578 191814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g0578 964 Pfam Leucine rich repeat 382 441 IPR001611 GO:0005515(InterPro)
Cco11g0578 964 Pfam Leucine rich repeat 240 298 IPR001611 GO:0005515(InterPro)
Cco11g0578 964 Pfam Leucine rich repeat 118 178 IPR001611 GO:0005515(InterPro)
Cco11g0578 964 SUPERFAMILY L domain-like 44 354 - -
Cco11g0578 964 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 26 304 - -
Cco11g0578 964 Gene3D Ribonuclease Inhibitor 286 573 IPR032675 -
Cco11g0578 964 SUPERFAMILY RNI-like 266 549 - -
Cco11g0578 964 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 675 757 - -
Cco11g0578 964 Pfam Leucine Rich Repeat 192 212 IPR001611 GO:0005515(InterPro)
Cco11g0578 964 Pfam Leucine Rich Repeat 215 237 IPR001611 GO:0005515(InterPro)
Cco11g0578 964 Pfam Leucine Rich Repeat 502 524 IPR001611 GO:0005515(InterPro)
Cco11g0578 964 Pfam Leucine Rich Repeat 478 500 IPR001611 GO:0005515(InterPro)
Cco11g0578 964 Pfam Leucine Rich Repeat 95 111 IPR001611 GO:0005515(InterPro)
Cco11g0578 964 PRINTS Leucine-rich repeat signature 192 205 - -
Cco11g0578 964 PRINTS Leucine-rich repeat signature 380 393 - -
Cco11g0578 964 ProSiteProfiles Protein kinase domain profile. 681 953 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco11g0578 964 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 305 574 - -
Cco11g0578 964 SUPERFAMILY Protein kinase-like (PK-like) 684 954 IPR011009 -
Cco11g0578 964 SMART LRR_typ_2 428 452 IPR003591 -
Cco11g0578 964 SMART LRR_typ_2 309 333 IPR003591 -
Cco11g0578 964 SMART LRR_typ_2 213 237 IPR003591 -
Cco11g0578 964 SMART LRR_typ_2 500 523 IPR003591 -
Cco11g0578 964 SMART LRR_typ_2 380 404 IPR003591 -
Cco11g0578 964 SMART LRR_typ_2 189 212 IPR003591 -
Cco11g0578 964 SMART LRR_typ_2 285 308 IPR003591 -
Cco11g0578 964 SMART LRR_typ_2 116 140 IPR003591 -
Cco11g0578 964 SMART LRR_typ_2 524 548 IPR003591 -
Cco11g0578 964 Gene3D Ribonuclease Inhibitor 26 182 IPR032675 -
Cco11g0578 964 Pfam Leucine rich repeat N-terminal domain 25 65 IPR013210 -
Cco11g0578 964 PANTHER LEUCINE RICH REPEAT KINASE 2 261 950 IPR051420 -
Cco11g0578 964 Pfam Protein tyrosine and serine/threonine kinase 683 949 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco11g0578 964 Gene3D Ribonuclease Inhibitor 183 281 IPR032675 -
Cco11g0578 964 CDD STKc_IRAK 687 953 - -
Cco11g0578 964 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 758 959 - -
Cco11g0578 964 Gene3D Transferase(Phosphotransferase) domain 1 758 962 - -
Cco11g0578 964 ProSitePatterns Protein kinases ATP-binding region signature. 687 710 IPR017441 GO:0005524(InterPro)
Cco11g0578 964 Gene3D Phosphorylase Kinase; domain 1 674 757 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco11g0578 Cco-Chr11:6196314 Cco05g0170 Cco-Chr5:1351734 8.90E-50 dispersed
Cco10g0333 Cco-Chr10:3912633 Cco11g0578 Cco-Chr11:6196314 6.30E-87 transposed
Cco07g1657 Cco-Chr7:30624312 Cco11g0578 Cco-Chr11:6196314 1.20E-25 transposed
Cco10g2265 Cco-Chr10:35515033 Cco11g0578 Cco-Chr11:6196314 3.00E-183 wgd
Cco11g0578 Cco-Chr11:6196314 Cco07g0542 Cco-Chr7:6960531 3.10E-180 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87229 PF07714 PK_Tyr_Ser-Thr 3.50E-42 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g0578 - - - 0.0