Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g0583 ATGGCCATCTCACCATTCTCTTCTCTTTCAATCTTCTTCCTTATTTTCCTTCCTGCAATCTCAGCCAATTACGGCCACGCCACCTTCTATGGCGGCGGAGACGCTTCCGGCACAATGGGCGGGGCTTGTGGGTATGGGAATTTGTACAGTCAAGGATATGGGACAAACACGGCGGCGCTAAGTACTGCTCTGTTCAACAATGGGCTGAGCTGTGGCTCTTGTTATGAAATCACTTGCAATAGTGATCCTAAATGGTGTCTTCCTGGAAAAATCATCGTCACTGCCACTAATTTCTGTCCACCAAACTTTGCTCTGTCCAACGACAATGGCGGCTGGTGCAACCCTCCTCTGCAGCACTTCGACTTGGCGGAGCCGGCTTTTCTCCAAATCGCTCAATACCGTGCTGGAATCGTCCCTGTTTCCTTCCAAAGAGTACCATGTATGAAGAAGGGAGGAATCAGATTCACCATTAACGGACATTCATACTTCAACTTGGTTCTGATCACCAACGTGGGCGGCGCCGGCGACGTTCACTCAGTGTCGATCAAAGGTTCGAAAACAGGATGGCAAGCCATGTCCAGAAATTGGGGACAGAATTGGCAGAGCAACAATTACTTGAACGGACAGAGTCTCTCTTTCCAAGTCACCACCAGCGACGGCCGTACCGTCACCAGCTACGACGCCGTTCCGGCCAACTGGCAGTTTGGCCAGACGTTCGAGGGAGGCCAATTCTAA 735 51.02 MAISPFSSLSIFFLIFLPAISANYGHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEITCNSDPKWCLPGKIIVTATNFCPPNFALSNDNGGWCNPPLQHFDLAEPAFLQIAQYRAGIVPVSFQRVPCMKKGGIRFTINGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNNYLNGQSLSFQVTTSDGRTVTSYDAVPANWQFGQTFEGGQF 244
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6253081 6254027 + CcPI632755_11g005830.1 Cco11g0583 191819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g0583 244 SMART dpbb_1 57 142 IPR007112 -
Cco11g0583 244 Pfam Expansin C-terminal domain 153 230 IPR007117 -
Cco11g0583 244 FunFam Expansin 18 148 - -
Cco11g0583 244 CDD DPBB_EXPA_N 25 147 - -
Cco11g0583 244 Gene3D - 19 148 IPR036908 -
Cco11g0583 244 PRINTS Expansin signature 91 101 IPR002963 GO:0009664(InterPro)
Cco11g0583 244 PRINTS Expansin signature 163 184 IPR002963 GO:0009664(InterPro)
Cco11g0583 244 PRINTS Expansin signature 52 66 IPR002963 GO:0009664(InterPro)
Cco11g0583 244 PRINTS Expansin signature 79 90 IPR002963 GO:0009664(InterPro)
Cco11g0583 244 PRINTS Expansin signature 198 219 IPR002963 GO:0009664(InterPro)
Cco11g0583 244 PRINTS Expansin signature 127 140 IPR002963 GO:0009664(InterPro)
Cco11g0583 244 PRINTS Expansin signature 227 243 IPR002963 GO:0009664(InterPro)
Cco11g0583 244 PRINTS Expansin signature 110 127 IPR002963 GO:0009664(InterPro)
Cco11g0583 244 PRINTS Expansin signature 151 163 IPR002963 GO:0009664(InterPro)
Cco11g0583 244 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 40 152 IPR007112 -
Cco11g0583 244 PRINTS Expansin/Lol pI family signature 189 203 IPR007118 GO:0005576(InterPro)
Cco11g0583 244 PRINTS Expansin/Lol pI family signature 227 241 IPR007118 GO:0005576(InterPro)
Cco11g0583 244 PRINTS Expansin/Lol pI family signature 135 151 IPR007118 GO:0005576(InterPro)
Cco11g0583 244 PRINTS Expansin/Lol pI family signature 21 36 IPR007118 GO:0005576(InterPro)
Cco11g0583 244 PRINTS Expansin/Lol pI family signature 39 57 IPR007118 GO:0005576(InterPro)
Cco11g0583 244 PRINTS Expansin/Lol pI family signature 61 79 IPR007118 GO:0005576(InterPro)
Cco11g0583 244 Gene3D - 151 244 IPR036749 -
Cco11g0583 244 FunFam Expansin 152 244 - -
Cco11g0583 244 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 162 241 IPR007117 -
Cco11g0583 244 Pfam Lytic transglycolase 57 142 IPR009009 -
Cco11g0583 244 SUPERFAMILY Barwin-like endoglucanases 12 170 IPR036908 -
Cco11g0583 244 PANTHER EXPANSIN-A15 12 244 IPR002963 GO:0009664(InterPro)
Cco11g0583 244 SUPERFAMILY PHL pollen allergen 149 241 IPR036749 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2686 Cco-Chr5:34845054 Cco11g0583 Cco-Chr11:6253081 7.00E-112 dispersed
Cco08g1595 Cco-Chr8:27509100 Cco11g0583 Cco-Chr11:6253081 4.60E-94 dispersed
Cco10g0345 Cco-Chr10:4001873 Cco11g0583 Cco-Chr11:6253081 1.00E-69 dispersed
Cco11g0583 Cco-Chr11:6253081 Cco11g0985 Cco-Chr11:16321521 8.40E-106 dispersed
Cco11g0583 Cco-Chr11:6253081 Cco07g0535 Cco-Chr7:6861690 5.40E-121 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g0583 - - - 0.0