Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g0593 ATGTCAAGAGAAAGCAGAGAATTGCAACAGGTCGATGAGACCGGGAAGAAAATAAAGAGGGAAATTGATCAAAGTTTTTATGATCCATTAATGGGAAGAAGACATATTTTAAGTCCAAGTACTGGGACGACATTGAATACAATAACGCCATGTGCAGCTTGTAAGCTTTTAAGAAGAAGATGTGCTCAAGAATGTCCATTTTCTCCTTATTTTTCTCCACATGAACCCCAAAAATTTGCTTCGGTTCATAAGGTTTTTGGTGCAAGCAACGTGGCTAAGATGCTAATGGAGGTACCGGAGAGTCAAAGAGCGGACGCAGCAAACAGCCTTGTTTATGAAGCAAATCTAAGGCTAAGAGATCCTGTGTATGGTTGCATGGGAGTCATTTCTGCTCTCCAACACCAACTTCATACTTTACAATCTGACCTCAATTCCATCAGAACTCAGATTTACAACTTCAAATTTACACAACATAATAATTCACACATTCCTAATTTCATTTCCGCCGCCGCAACCCCGCCTGCAGCCCCGCCCACTCCGCCGCATTCTCAGCCGCCTCCCCTCTCTCTTCCGCCGCCTCTTCCTTCCTCCTCTTCCATCTTTTCCTCTCCTATTATCACTACTACTGCTGCTGCCCCTGAATTAATTAACCCCGTCTCAACAACTCAACATATTTCCTACTTTGGTTAA 690 43.33 MSRESRELQQVDETGKKIKREIDQSFYDPLMGRRHILSPSTGTTLNTITPCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVAKMLMEVPESQRADAANSLVYEANLRLRDPVYGCMGVISALQHQLHTLQSDLNSIRTQIYNFKFTQHNNSHIPNFISAAATPPAAPPTPPHSQPPPLSLPPPLPSSSSIFSSPIITTTAAAPELINPVSTTQHISYFG 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6343251 6345733 + CcPI632755_11g005930.1 Cco11g0593 191829
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g0593 229 MobiDBLite consensus disorder prediction 167 194 - -
Cco11g0593 229 ProSiteProfiles LOB domain profile. 49 150 IPR004883 -
Cco11g0593 229 Pfam Lateral organ boundaries (LOB) domain 50 146 IPR004883 -
Cco11g0593 229 Coils Coil 129 149 - -
Cco11g0593 229 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 48 173 - -
Cco11g0593 229 MobiDBLite consensus disorder prediction 171 194 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco09g2239 Cco-Chr9:36681243 Cco11g0593 Cco-Chr11:6343251 2.00E-28 dispersed
Cco10g1378 Cco-Chr10:26834204 Cco11g0593 Cco-Chr11:6343251 2.20E-32 dispersed
Cco11g0593 Cco-Chr11:6343251 Cco11g1139 Cco-Chr11:22185943 7.30E-35 dispersed
Cco08g1372 Cco-Chr8:25633347 Cco11g0593 Cco-Chr11:6343251 6.70E-08 transposed
Cco11g0593 Cco-Chr11:6343251 Cco07g0518 Cco-Chr7:6404829 7.00E-54 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60247 PF03195 LOB 1.90E-40 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g0593 - - - 0.0