Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco11g0593 | ATGTCAAGAGAAAGCAGAGAATTGCAACAGGTCGATGAGACCGGGAAGAAAATAAAGAGGGAAATTGATCAAAGTTTTTATGATCCATTAATGGGAAGAAGACATATTTTAAGTCCAAGTACTGGGACGACATTGAATACAATAACGCCATGTGCAGCTTGTAAGCTTTTAAGAAGAAGATGTGCTCAAGAATGTCCATTTTCTCCTTATTTTTCTCCACATGAACCCCAAAAATTTGCTTCGGTTCATAAGGTTTTTGGTGCAAGCAACGTGGCTAAGATGCTAATGGAGGTACCGGAGAGTCAAAGAGCGGACGCAGCAAACAGCCTTGTTTATGAAGCAAATCTAAGGCTAAGAGATCCTGTGTATGGTTGCATGGGAGTCATTTCTGCTCTCCAACACCAACTTCATACTTTACAATCTGACCTCAATTCCATCAGAACTCAGATTTACAACTTCAAATTTACACAACATAATAATTCACACATTCCTAATTTCATTTCCGCCGCCGCAACCCCGCCTGCAGCCCCGCCCACTCCGCCGCATTCTCAGCCGCCTCCCCTCTCTCTTCCGCCGCCTCTTCCTTCCTCCTCTTCCATCTTTTCCTCTCCTATTATCACTACTACTGCTGCTGCCCCTGAATTAATTAACCCCGTCTCAACAACTCAACATATTTCCTACTTTGGTTAA | 690 | 43.33 | MSRESRELQQVDETGKKIKREIDQSFYDPLMGRRHILSPSTGTTLNTITPCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVAKMLMEVPESQRADAANSLVYEANLRLRDPVYGCMGVISALQHQLHTLQSDLNSIRTQIYNFKFTQHNNSHIPNFISAAATPPAAPPTPPHSQPPPLSLPPPLPSSSSIFSSPIITTTAAAPELINPVSTTQHISYFG | 229 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 6343251 | 6345733 | + | CcPI632755_11g005930.1 | Cco11g0593 | 191829 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco11g0593 | 229 | MobiDBLite | consensus disorder prediction | 167 | 194 | - | - | |
Cco11g0593 | 229 | ProSiteProfiles | LOB domain profile. | 49 | 150 | IPR004883 | - | |
Cco11g0593 | 229 | Pfam | Lateral organ boundaries (LOB) domain | 50 | 146 | IPR004883 | - | |
Cco11g0593 | 229 | Coils | Coil | 129 | 149 | - | - | |
Cco11g0593 | 229 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 48 | 173 | - | - | |
Cco11g0593 | 229 | MobiDBLite | consensus disorder prediction | 171 | 194 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco09g2239 | Cco-Chr9:36681243 | Cco11g0593 | Cco-Chr11:6343251 | 2.00E-28 | dispersed | |
Cco10g1378 | Cco-Chr10:26834204 | Cco11g0593 | Cco-Chr11:6343251 | 2.20E-32 | dispersed | |
Cco11g0593 | Cco-Chr11:6343251 | Cco11g1139 | Cco-Chr11:22185943 | 7.30E-35 | dispersed | |
Cco08g1372 | Cco-Chr8:25633347 | Cco11g0593 | Cco-Chr11:6343251 | 6.70E-08 | transposed | |
Cco11g0593 | Cco-Chr11:6343251 | Cco07g0518 | Cco-Chr7:6404829 | 7.00E-54 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
60247 | PF03195 | LOB | 1.90E-40 | No_clan | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco11g0593 | - | - | - | 0.0 |