Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco11g0594 | ATGGCTGATTCAAGATTCAGAGGAGTTTTGGTTTTGACTTTGGCTTTGTTTATGCTCTTTTTGGGGAATGTCTCAGCTCAACTTTCTACTGGGTTTTACTCTTCTTCTTGTCCAAATTTGTTGTCCACCGTCAAATCCTCTGTTCGATCTGCTGTCTCCAGTGAAGCTCGAATGGGCGCTTCCATTCTTCGCTTGTTTTTTCATGACTGTTTCGTCAATGGATGCGACGGGTCCATTTTGTTAGACGACACGGCAAGCTTTACTGGAGAGAAAAATGCAAACCCCAATAGAAACTCAGCTAGAGGCTTTGATGTCATTGATAACATTAAAACCGCTGTCGAAAAAGCTTGTCCTGGCGTTGTTTCTTGTGCTGATATTCTTGCTATTGCTGCTCGTGACTCTGTCGTTCTCCTAGGAGGGCCAAGCTGGAATGTGAAGTTGGGAAGAAGAGACGCCACAACTGCGAGCCAATCCCAAGCCAACAGCGATATCCCCGGGCCAACTTCAACTTTAAACCAACTCAGCTCTAGATTCAGCGCTCTCGGACTCTCCAACACCGACTTAGTTGCCCTTTCAGGCGGGCACACGATCGGACAAGCACAGTGCACGACATTTAGAGGGAGAATATACAGCAATGGCACAAACATTGAGAGTTCATTTGCAAGAACAAGGCAAAGCAATTGCCCCAATACCTCAGGAACTGGAGACAACAATTTGGCTCCTTTGGATTTGCAAACTCCAAACTCATTTGACAACAACTACTTCAAGAATCTTCTTCAAAACAAGGGCCTTCTACAATCGGATCAAGTTCTCTTCAATGGCGGATCTACAGATTCCACTGTTCAAAATTACGCAAATGCCCCTGCTCGTTTCTTCTCTGATTTTGCTGCTGCCATGGTGAAGATGGGAGATATCAGTCCTCTTACTGGCTCCAATGGTGAAATTAGGAAGGACTGCAGGAGGGTTAACTAA | 972 | 45.37 | MADSRFRGVLVLTLALFMLFLGNVSAQLSTGFYSSSCPNLLSTVKSSVRSAVSSEARMGASILRLFFHDCFVNGCDGSILLDDTASFTGEKNANPNRNSARGFDVIDNIKTAVEKACPGVVSCADILAIAARDSVVLLGGPSWNVKLGRRDATTASQSQANSDIPGPTSTLNQLSSRFSALGLSNTDLVALSGGHTIGQAQCTTFRGRIYSNGTNIESSFARTRQSNCPNTSGTGDNNLAPLDLQTPNSFDNNYFKNLLQNKGLLQSDQVLFNGGSTDSTVQNYANAPARFFSDFAAAMVKMGDISPLTGSNGEIRKDCRRVN | 323 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 6349590 | 6350945 | - | CcPI632755_11g005940.1 | Cco11g0594 | 191830 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco11g0594 | 323 | Gene3D | Peroxidase, domain 2 | 165 | 302 | - | - | |
| Cco11g0594 | 323 | PANTHER | PEROXIDASE 72-RELATED | 16 | 322 | IPR000823 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Cco11g0594 | 323 | FunFam | Peroxidase | 31 | 174 | - | - | |
| Cco11g0594 | 323 | ProSitePatterns | Peroxidases active site signature. | 59 | 70 | IPR019794 | GO:0004601(InterPro) | |
| Cco11g0594 | 323 | Gene3D | - | 31 | 323 | - | - | |
| Cco11g0594 | 323 | PRINTS | Plant peroxidase signature | 257 | 274 | IPR000823 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Cco11g0594 | 323 | PRINTS | Plant peroxidase signature | 241 | 256 | IPR000823 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Cco11g0594 | 323 | PRINTS | Plant peroxidase signature | 297 | 310 | IPR000823 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Cco11g0594 | 323 | PRINTS | Plant peroxidase signature | 101 | 114 | IPR000823 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Cco11g0594 | 323 | PRINTS | Plant peroxidase signature | 61 | 81 | IPR000823 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Cco11g0594 | 323 | PRINTS | Plant peroxidase signature | 37 | 56 | IPR000823 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Cco11g0594 | 323 | PRINTS | Plant peroxidase signature | 120 | 130 | IPR000823 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Cco11g0594 | 323 | PRINTS | Plant peroxidase signature | 186 | 198 | IPR000823 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Cco11g0594 | 323 | PRINTS | Plant peroxidase signature | 139 | 154 | IPR000823 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Cco11g0594 | 323 | ProSitePatterns | Peroxidases proximal heme-ligand signature. | 187 | 197 | IPR019793 | - | |
| Cco11g0594 | 323 | PRINTS | Haem peroxidase superfamily signature | 139 | 151 | IPR002016 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Cco11g0594 | 323 | PRINTS | Haem peroxidase superfamily signature | 121 | 138 | IPR002016 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Cco11g0594 | 323 | PRINTS | Haem peroxidase superfamily signature | 187 | 202 | IPR002016 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Cco11g0594 | 323 | PRINTS | Haem peroxidase superfamily signature | 59 | 73 | IPR002016 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Cco11g0594 | 323 | PRINTS | Haem peroxidase superfamily signature | 243 | 258 | IPR002016 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Cco11g0594 | 323 | ProSiteProfiles | Plant heme peroxidase family profile. | 27 | 323 | IPR002016 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Cco11g0594 | 323 | CDD | secretory_peroxidase | 27 | 322 | IPR033905 | GO:0004601(InterPro)|GO:0042744(InterPro) | |
| Cco11g0594 | 323 | FunFam | Peroxidase | 165 | 302 | - | - | |
| Cco11g0594 | 323 | Pfam | Peroxidase | 44 | 286 | IPR002016 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Cco11g0594 | 323 | SUPERFAMILY | Heme-dependent peroxidases | 27 | 323 | IPR010255 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco02g2045 | Cco-Chr2:33423415 | Cco11g0594 | Cco-Chr11:6349590 | 3.10E-108 | dispersed | |
| Cco02g2046 | Cco-Chr2:33427945 | Cco11g0594 | Cco-Chr11:6349590 | 8.00E-109 | dispersed | |
| Cco02g2050 | Cco-Chr2:33449353 | Cco11g0594 | Cco-Chr11:6349590 | 1.30E-92 | dispersed | |
| Cco02g2051 | Cco-Chr2:33462766 | Cco11g0594 | Cco-Chr11:6349590 | 8.70E-95 | dispersed | |
| Cco02g2530 | Cco-Chr2:37640777 | Cco11g0594 | Cco-Chr11:6349590 | 6.50E-74 | dispersed | |
| Cco02g2531 | Cco-Chr2:37650492 | Cco11g0594 | Cco-Chr11:6349590 | 8.20E-77 | dispersed | |
| Cco04g1423 | Cco-Chr4:29638604 | Cco11g0594 | Cco-Chr11:6349590 | 1.20E-88 | dispersed | |
| Cco04g1755 | Cco-Chr4:32544783 | Cco11g0594 | Cco-Chr11:6349590 | 1.30E-88 | dispersed | |
| Cco04g1813 | Cco-Chr4:33006412 | Cco11g0594 | Cco-Chr11:6349590 | 1.10E-14 | dispersed | |
| Cco07g0944 | Cco-Chr7:21624347 | Cco11g0594 | Cco-Chr11:6349590 | 2.40E-87 | dispersed | |
| Cco09g1278 | Cco-Chr9:13885720 | Cco11g0594 | Cco-Chr11:6349590 | 3.00E-75 | dispersed | |
| Cco09g1704 | Cco-Chr9:28430584 | Cco11g0594 | Cco-Chr11:6349590 | 1.90E-63 | dispersed | |
| Cco09g1962 | Cco-Chr9:33655216 | Cco11g0594 | Cco-Chr11:6349590 | 3.00E-72 | dispersed | |
| Cco11g0108 | Cco-Chr11:1159819 | Cco11g0594 | Cco-Chr11:6349590 | 1.10E-105 | dispersed | |
| Cco11g0109 | Cco-Chr11:1164916 | Cco11g0594 | Cco-Chr11:6349590 | 1.70E-106 | dispersed | |
| Cco11g0594 | Cco-Chr11:6349590 | Cco11g0729 | Cco-Chr11:8032282 | 1.90E-60 | dispersed | |
| Cco01g0502 | Cco-Chr1:4882541 | Cco11g0594 | Cco-Chr11:6349590 | 6.60E-77 | transposed | |
| Cco05g2597 | Cco-Chr5:34229134 | Cco11g0594 | Cco-Chr11:6349590 | 9.20E-77 | transposed | |
| Cco11g0079 | Cco-Chr11:831253 | Cco11g0594 | Cco-Chr11:6349590 | 3.30E-82 | transposed | |
| Cco11g0594 | Cco-Chr11:6349590 | Cco03g0025 | Cco-Chr3:278377 | 1.00E-95 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco11g0594 | K00430 | - | csv:101218447 | 566.614 |