Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g0613 ATGACACCAGAGACAATTGAGAGGAAGAGGAAGTCACGGAGTAGACGAGATCGATCGACCGTGGCTGAGACTCTTGCTAAGTGGAAAGCTTATAATGAATGTTTTGATTCTTGTAATGATGGAAGCAAGCCAATTCGTAAAGCTCCAGCAAAAGGGTCTAAGAAGGGATGTATGAAAGGTAAGGGAGGACCCTTAAATTCACATTGCAATTACAGAGGGGTGAGACAGAGGACTTGGGGCAAATGGGTTGCAGAGATTCGTGAACCCAATAGGGGGAGTAGGCTTTGGCTTGGTACTTTCCCCACTGCCATTGAAGCTGCTCTCGCCTACGACGAGGCTGCGAGGACGATGTACGGTCCGAGTGCTCGTTTAAACCTTCCCAACGCTAAAAACAGAGGGCAACTACAAGGGATTCTTCTGGAGGATTACTTGGGCCTGCGTAACTCGGATTCTTCAACTGCTACTTCAACATGTTCTGAATCGACGACCACGACGTCGAACCAATCTGAGGTCTGCGTGCCTGAGGAGTTCACAAAAAGGCCGCAGCTTGTGCCCTCAAACATTAAGACTGAAGATGGAGAAGGTGAATCGAGGACAGGGGATCACACTGATGGTACTGCGACACTGATGCGCTTAGAGAATGAAGTGAAACATGAGGATTGCAATGATCGGGCAGCTGTATTAGGGACTGAGTTTCCCAGTTTGGATCAGTCGCAGAACTTTCCAATTGATGAAATGTTCGAGCCAAGGACCGGGAATCAGGCTGATCATATGGCGATGCCTATGAGCTTAGAGAAGCAAGTGAAGGATGAGGATCTCGATGCTGTATATCGTGATTGGAGCAACGACCAAGCAGTCTTACCAGAAGCCGGGATTTCTAGTCTGAATAATTTACAGAACTTTCAAATGGATGAAATGTTTGATGTGGAAGAGCTCCTAAGCCTGATAAGTAGTGATTCCTTGTATGATCCAACAACAAACATCTTGAAGGGCAATGCAGATGGTTATACTAACGTAGCGCCTTCACAAGTTAGCAATCTTGGGTCCGAGAAGCCGTCAAGTTGGTCATACCAATTCCAAAATCCCGGAGCGAAGCTGCTCGGAAGTCTCCAACAGACGGAGCAAGCGCCAGCGGATGCAGACTATGGATTTGATTTCTTGAAGCAGGGGAGGGAGGAGGATCTGAATGCCGCAGCAGATGATTGTGTTAGATACCTGAACGAGATGGGTGATTTAGGTTTCTAA 1245 47.39 MTPETIERKRKSRSRRDRSTVAETLAKWKAYNECFDSCNDGSKPIRKAPAKGSKKGCMKGKGGPLNSHCNYRGVRQRTWGKWVAEIREPNRGSRLWLGTFPTAIEAALAYDEAARTMYGPSARLNLPNAKNRGQLQGILLEDYLGLRNSDSSTATSTCSESTTTTSNQSEVCVPEEFTKRPQLVPSNIKTEDGEGESRTGDHTDGTATLMRLENEVKHEDCNDRAAVLGTEFPSLDQSQNFPIDEMFEPRTGNQADHMAMPMSLEKQVKDEDLDAVYRDWSNDQAVLPEAGISSLNNLQNFQMDEMFDVEELLSLISSDSLYDPTTNILKGNADGYTNVAPSQVSNLGSEKPSSWSYQFQNPGAKLLGSLQQTEQAPADADYGFDFLKQGREEDLNAAADDCVRYLNEMGDLGF 414
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6571005 6572808 + CcPI632755_11g006130.1 Cco11g0613 191849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g0613 414 Pfam AP2 domain 70 119 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco11g0613 414 CDD AP2 69 129 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco11g0613 414 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 7 312 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006950(PANTHER)|GO:0045893(PANTHER)
Cco11g0613 414 PRINTS Ethylene responsive element binding protein signature 93 109 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco11g0613 414 PRINTS Ethylene responsive element binding protein signature 71 82 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco11g0613 414 SMART rav1_2 70 133 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco11g0613 414 Gene3D AP2/ERF domain 70 128 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco11g0613 414 FunFam Ethylene-responsive transcription factor 2 69 128 - -
Cco11g0613 414 SUPERFAMILY DNA-binding domain 70 127 IPR016177 GO:0003677(InterPro)
Cco11g0613 414 MobiDBLite consensus disorder prediction 150 172 - -
Cco11g0613 414 ProSiteProfiles AP2/ERF domain profile. 70 127 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1215 Cco-Chr2:22625311 Cco11g0613 Cco-Chr11:6571005 8.00E-49 dispersed
Cco04g0852 Cco-Chr4:24101945 Cco11g0613 Cco-Chr11:6571005 2.70E-39 dispersed
Cco05g2104 Cco-Chr5:30029291 Cco11g0613 Cco-Chr11:6571005 1.50E-30 dispersed
Cco08g1651 Cco-Chr8:27991758 Cco11g0613 Cco-Chr11:6571005 2.90E-30 dispersed
Cco10g1695 Cco-Chr10:30488875 Cco11g0613 Cco-Chr11:6571005 2.50E-26 dispersed
Cco11g0613 Cco-Chr11:6571005 Cco11g1590 Cco-Chr11:28799486 1.20E-19 dispersed
Cco11g0613 Cco-Chr11:6571005 Cco11g0619 Cco-Chr11:6659177 2.90E-18 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60249 PF00847 AP2 7.40E-15 CL0081 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g0613 K09286 - csv:101215431 634.024