Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco11g0618 | ATGAGAGGTTGGCATGAGACTCGTTCTTCTTCTTCTTGTGCAGCCTGCAAATTGCTGAAAAGAAGATGCATTCCCACTTGTATATTTGCTCCTTATTTTAGGTCTGATGAGCCAAAGAAATTTGCCAAAGTTCATAAGGTTTTTGGGGCAAGTAATGTGAGTAAAATTCTGACTGAGGTTCCTGAGGAGCAGAGAGAAGACACTGTCAATTCTTTGGCTTATGAAGCTGAGGCCAGGCTGAGGGATCCTGTTTATGGCTGCATCGGCGCCATAGCTTTGTTGCAAACAAAAATGGTGGAGCTTCAACATGATCTTGCCCTTGCCAAAGCTCGTCTTGCTCGTTATGCTAATACTTCTTCTTCTTCTTCTTCTTCTTCTTTAGAAAATTGTGTTGTTAATATGTCTTATGGTGGATTCAGTATCTCTTCAGGCCAGAGCTCTTCTGATATCACCCAATATGGATATTTATGTGACTTCTCTCATTTTCCTTATCCATTTAAAGCTTGA | 507 | 40.83 | MRGWHETRSSSSCAACKLLKRRCIPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQTKMVELQHDLALAKARLARYANTSSSSSSSSLENCVVNMSYGGFSISSGQSSSDITQYGYLCDFSHFPYPFKA | 168 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 6640944 | 6641450 | + | CcPI632755_11g006180.1 | Cco11g0618 | 191854 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco11g0618 | 168 | Pfam | Lateral organ boundaries (LOB) domain | 12 | 109 | IPR004883 | - | |
Cco11g0618 | 168 | ProSiteProfiles | LOB domain profile. | 11 | 112 | IPR004883 | - | |
Cco11g0618 | 168 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 11 | 120 | - | - | |
Cco11g0618 | 168 | Coils | Coil | 91 | 118 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco11g0618 | Cco-Chr11:6640944 | Cco11g1139 | Cco-Chr11:22185943 | 1.50E-37 | dispersed | |
Cco11g0618 | Cco-Chr11:6640944 | Cco10g1378 | Cco-Chr10:26834204 | 1.50E-37 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
60250 | PF03195 | LOB | 1.30E-38 | No_clan | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco11g0618 | - | - | - | 0.0 |