Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g0618 ATGAGAGGTTGGCATGAGACTCGTTCTTCTTCTTCTTGTGCAGCCTGCAAATTGCTGAAAAGAAGATGCATTCCCACTTGTATATTTGCTCCTTATTTTAGGTCTGATGAGCCAAAGAAATTTGCCAAAGTTCATAAGGTTTTTGGGGCAAGTAATGTGAGTAAAATTCTGACTGAGGTTCCTGAGGAGCAGAGAGAAGACACTGTCAATTCTTTGGCTTATGAAGCTGAGGCCAGGCTGAGGGATCCTGTTTATGGCTGCATCGGCGCCATAGCTTTGTTGCAAACAAAAATGGTGGAGCTTCAACATGATCTTGCCCTTGCCAAAGCTCGTCTTGCTCGTTATGCTAATACTTCTTCTTCTTCTTCTTCTTCTTCTTTAGAAAATTGTGTTGTTAATATGTCTTATGGTGGATTCAGTATCTCTTCAGGCCAGAGCTCTTCTGATATCACCCAATATGGATATTTATGTGACTTCTCTCATTTTCCTTATCCATTTAAAGCTTGA 507 40.83 MRGWHETRSSSSCAACKLLKRRCIPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQTKMVELQHDLALAKARLARYANTSSSSSSSSLENCVVNMSYGGFSISSGQSSSDITQYGYLCDFSHFPYPFKA 168
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6640944 6641450 + CcPI632755_11g006180.1 Cco11g0618 191854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g0618 168 Pfam Lateral organ boundaries (LOB) domain 12 109 IPR004883 -
Cco11g0618 168 ProSiteProfiles LOB domain profile. 11 112 IPR004883 -
Cco11g0618 168 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 11 120 - -
Cco11g0618 168 Coils Coil 91 118 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco11g0618 Cco-Chr11:6640944 Cco11g1139 Cco-Chr11:22185943 1.50E-37 dispersed
Cco11g0618 Cco-Chr11:6640944 Cco10g1378 Cco-Chr10:26834204 1.50E-37 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60250 PF03195 LOB 1.30E-38 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g0618 - - - 0.0