Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g0630 ATGGAGTGTGGAAGGAATCCCCATTGTATGAAATGCTGCAAATTTGGGATGTTTGTAATGTCTTTTCTTGTACTCAGCCTTCTTTTAGCCTCAGCAGCACAGGGAGGAAATGACACAGACAGGTTTGCATTGCTTTCTTTTAAATCTGAGATAATTGTTGACCCATTTGGCCTGTTCACCTCTTGGAATGAATCTGTTCATTTTTGCAACTGGGAAGGTGTTAAATGCAGCCCACAACAGAGAGTTACTGAGTTAAATCTTCCCTCTTATCAATTCATTGGTCAATTATCACCTTCTATAGGGAACTTGAGCTTCCTTACAACATTAAGCCTCCATAACAATAGTTTTGGAGGGGAAATTCCACAAGAGATAGGTAGCTTGAGCAAGCTGCAAATATTGGACTTGGACAACAATTACTTTGTAGGGGAGATTCCCACAACCATATCAAATTGCTCAGAGCTTCAATACATTGGATTGTTAAGAAACAATCTAACTGGCATGTTGCCCATGGAACTTGGGTTGTTAACCAAGCTTCAAGTATTTGAGTTGTCTTCCAATCAACTGTTTGGAGAAATACCTGAAGCATTTGGAAATCTGTCATCTCTCTGGGGTTTCTGGGCTTCCTTGAATAACTTCCATGGCAGTATTCCAAGTAGTTTTGGGCAGTTGAGAAATTTGGTAGCTCTTTCTATTGGGGCAAACAAGCTGACAGGTACTATCCCTTCCTCAATATACAATATTTCATCTATGAGAATGCTTTCATTACCTGTTAACCAGCTTGAGGGTAGGCTTCCCACAGATTTAGGCTTCATCTGCCCAAACCTTCAGGTTCTAAAAATCCACACCAATCAATTCAGTGGACCAATTCCTTTTACACTATCCAATGCCTCAAAACTAGTAGAGTTCGTCCTCTCAAAAAATATGTTTTCTGGGAAGATGCCTAGCATGACAAGCTCAAGGCATCTACAGGTTTTTGGAATAGGTGAAAACAATCTAGGATATGGGAATGTTGATGACTTGAATTTTCTGTTCTCTCTTGTTAATTGCTCCAATTTGAGTTCTGTAGTCATCAGCGACAACAATTTTGGTGGGGCCCTACCAGAGTATATAAGCAACTTCTCTACAAAGCTTACGGTTATAGGATTTGGTAGGAATCATATTCATGGAACAATTCCAACTGAGATTGGCAATCTTTTCCAATTAGGAGCATTAGGAATGGAGACAAACCAATTGACTGGTTCTATACCAAGCTCACTAGGCAAACTAAAAAGGCTGAATGATTTGTTTTTAAATGGAAACAAACTCTCAGGGTCAATCCCCCAATCTCTTGGAAACTTGTCTGCACTTGGGAGATGCAATCTGAGGTTAAACAACTTAACTGGAGCCATACCACCAAGTCTAGGAGAAATCCAAAATTTGCTAATGCTGGCACTCTCTCAAAACCAACTATCTGGTGTAATACCAAAAGAATTGTTGAGTATATCATCTTTATCAATTGCTCTGGATCTGTCTGAGAACTATTTGACTGGCTCCATTCCATTGGAAGTGGGCAAGTTGGTAAATCTTGGCTATTTGCATATTTCTGATAACAGGTTAACTGGGTTTATTCCCTCTACTCTTAGTGCTTGCACGAGCTTAGAAGATCTACACTTGGATGGAAATTTCCTTGAGGGCTCTATACCTCAGTCTTTGAATTCTTTGAGAGGTATCGAAGAACTCGACCTTTCTCGCAACAATTTGTCAGGGAAAATCCCATCTTATTTGCAGGAGTTCAAAGTTTTGAGCTATTTAAATTTATCTTTCAACAATTTGGAAGGTGAAGTTCCTACTCAAGGAGTGTTCAAAAATAAAACTGCATTTTCCATTCTTGGAAATAAGCAACTTTGCAATGGCATACCTGAATTAAATCTACCAAAATGCAGTTTGGATAATCCCAGAAAGCAGAAATTAACTACCAAACTGAAAGTAATTATCTCAGTTGCTGGTGGATTGGTCGGAAGCCTTCTGGTTATCTGTTGTTTGCTCTTTTTTTGGTCAAGGAAGAAAAGAAATAAGTCGGATTTGAGCCGATCACTGAAGGTTTCCTATTTTGTTGTGTCTTATAGTGACCTCCTGAAGGCCACCAATGAGTTTTCTCCCAACAATCTAATTGGAGTTGGTGGTTATGGGTCTGTCTATAAGGGAATTCTTAGTCAAGATGGAAGTGTTGTTGCAGTTAAAGTGTTCAACCTTCAACATAGGGGAGCTTCAAAGAGTTTTCTAGCAGAATGTGAAGCTCTTAAAAGCATTAGACATCGCAATCTTGTCCGAATTCTTTCTGCTTGCTCGGGAGTCGATTTTCAAGGTAACGACTTTATGGCATTGGTATTTGATTTCATGGTTAATGGGAGCCTAGAGAAGTGGTTGCATCCAGTTGATAATTTGAACCAGGAAGGGGAGCAGAGGTATTTAAATATTATGCAAAGGCTAGATATTGCCATTGATGTGGCTAGTGCTCTAGATTATCTGCATAATGGTACCCACATACCAATAGCTCACTGTGACTTAAAGCCAAGCAATGTTCTTTTGGATGCTAACATGATTGCTCATGTTGGAGATTTTGGATTGGCAAAATTTATGGCTGGGACTCCTTTCCAAAACAGATCAACCGAAAGCGGATCCATTGGCATACGAGGCACGGTTGGATATGCTCCTCCAGAGTATGCCATGGGAAGCAAGGTTTCGACACATGGTGATGTGTACAGTTATGGCATCCTATTGTTGGAGATGTTCACTGGAAACAGTCCAACTGATAATATGTTCAAAGATGGCTTAACCTTGAACAACTACGTTCTAACAGCCTTACCTGAAAGGGTACAAGAAATAGCAGACCCAACAATGGGCCTTCAGGCACTGAATGGAATAAGCAACAATAATAACATGCTTAACAACAACCATGTTCTTGAGGCTTTACCCGATCAGTTAGAACAAATGGGAGATCCAAAATTGAGCCTTCAAGAACGGGAGGGAACAGGAAACCAAAATCTTATGGTTCAAGCTAATGAATCTCTCAGAATTAAAGAGTGCTTGTTTTCAATTTTCAGCATAGGAGTTGTATGTTCTGCCCCAATGCCTAGTGTTAAATGCAGTTCACAACAGAGAGTCACTGAGTTAAATCTTCCTTCTTATCGATTCATTGGTCAATTATCACCTTCTATAGGGAACTTGAGCTTCCTTACAACATTAAGCCTCCATAACAATAGCTTTCGGGGGGAAATTCCACAAGAGATAGGTAGCTTGAGCAAGCTGCAAATATTGGAATTGGACAACTACTACTTTGTAGGGGAGATTCCTACAGCCATATTCAATTGCTCAAAGTTTCAATACATTGGATTCTTAAGAAACAATCTAACTGGCATGCTGCCAATGGAACTTGGGTTGTTAACCAAGCTTCAAGTATTTGAGTTGTCTTCCAATCAATTGCTTGGAGAAATACCTGAAGCATTTGGAAATCTATCATCTCTTAGGGGCTTCTGGGCCCCCCAGAATCATTTCCATGGCAGTATTCCTACTAGTTTTGGGCAGTTGAAAAATTTAACCGTTCTTTCTATTGGGTCAAACAATCTGACAGGCACTATTCCTTCTTCAATCTACAATCTTTCATCCATAAGAATCTTTTCACTTCCTGGAAAGTGCCTAGCTTGGCTAACATGCGAGATCTTGAGGACCTTACACTTTTTGAAAAGTCTTGGATTTAGGGATGATCATGACTTGAATTTTCTGTTCTCTCTTGTTAATTGCTCCAATTTGAGTATTGTAGTCATCAGCGACAACAATTTTGGTGGGGCACTACCAGAGTGTATAAGTAACTTCTCTACAAAGCTTACGATTGTAGGAATTGGTAGGAATCATATTCATGGAACAATTCCAACTGAGATTGGAAATCTTTTCCAATTAGGAGCATTAGGAATGGAGACAAACCAATTGACTGGTTCTATACCAAGCTCACTAGGCAAACTAAAAAAGCTGAATGATTTGTTTTTAAATGGAAACAAACTCTCAGGGGCAATCCCCCAATCTCTTAGAAACTTGTCTGCACTTGGGAGATGCAATCTGAGGTTAAACAACTTAACTGGAGCCATACCACCAAGTCCAGGAGAAATCCAAAATTTGCTAATGCTGGCACTCTCTCAAAACCAACTATCTAGTGCAATACCAAAAGAATTGTTGAGTATATCATCTTTATCAATTGCTCTAGATCTGTCTAAGAACTATTTGACTGGCTCCATTCCAATGGAAGTGGGCAAGTTGGTAAATCTTGGCTATTTGCATATTTCTGATAACAGGTTAACTGGGGTTATTCCCTCTACTCTCAGTGCTTGCACGAGCTTAGAAGATCTACACTTGGATGGAAATTTCCTTGAGGGCCCTATACCTCAGTCTTTGAGTTTTTTGAGAGGGAAGAAAAGAAGTACGTCAGATTTGCGTCCATCACTGAAGGCTCCCTATTTTGTTGTATCTTATAATGACCTCCTCAAGGCCACCAATGGCTTTTCTCCTAACAATCTAATTGGAGTTGGTGGTTATGGGTCCGTCTATAAAGGAATTCTTAGTCAAGATGAAAGTGTTCTTTCAGTTAAAGTGTTCAACCTTCAACATAGGGGAGCTTCAAAGAGTTTTCTAGCAGAATGTGAAGCTCTTAAAAGCATTAGACATCGCAATCTCGTCCGAATTCTTTCTGCTTGCTCGGGAGTCGATTTTCAAGGCAACCACTTTATGGCATTGGTATTTGATTTCATGGTTAATGGGAGCCTAGAGAAGTGGTTGCATCCAGTTGATAATTTGAACCAGGAAGAGGAGCAAAGGTATTTAAATATTATGCAAAGGCTAGATATTGCCATTGAAGTGGCCAGTGCTCTAGATTATCTGCATAATGGTAGCCACATACCAATAGCTCACTGTGACTTAAAGCCAAGCAATGTTCTTTTGGATGCTAACATGACTGCTCATGTTGGAGATTTTGGATTGGCAAAATTTATGGTTGGAACTTCCTTCCAGAACAAATCAACTGAAAGTGGATCCATCGGCATACGAGGCACGGTTGGATATGCTCCTCCAG 5098 39.9 MECGRNPHCMKCCKFGMFVMSFLVLSLLLASAAQGGNDTDRFALLSFKSEIIVDPFGLFTSWNESVHFCNWEGVKCSPQQRVTELNLPSYQFIGQLSPSIGNLSFLTTLSLHNNSFGGEIPQEIGSLSKLQILDLDNNYFVGEIPTTISNCSELQYIGLLRNNLTGMLPMELGLLTKLQVFELSSNQLFGEIPEAFGNLSSLWGFWASLNNFHGSIPSSFGQLRNLVALSIGANKLTGTIPSSIYNISSMRMLSLPVNQLEGRLPTDLGFICPNLQVLKIHTNQFSGPIPFTLSNASKLVEFVLSKNMFSGKMPSMTSSRHLQVFGIGENNLGYGNVDDLNFLFSLVNCSNLSSVVISDNNFGGALPEYISNFSTKLTVIGFGRNHIHGTIPTEIGNLFQLGALGMETNQLTGSIPSSLGKLKRLNDLFLNGNKLSGSIPQSLGNLSALGRCNLRLNNLTGAIPPSLGEIQNLLMLALSQNQLSGVIPKELLSISSLSIALDLSENYLTGSIPLEVGKLVNLGYLHISDNRLTGFIPSTLSACTSLEDLHLDGNFLEGSIPQSLNSLRGIEELDLSRNNLSGKIPSYLQEFKVLSYLNLSFNNLEGEVPTQGVFKNKTAFSILGNKQLCNGIPELNLPKCSLDNPRKQKLTTKLKVIISVAGGLVGSLLVICCLLFFWSRKKRNKSDLSRSLKVSYFVVSYSDLLKATNEFSPNNLIGVGGYGSVYKGILSQDGSVVAVKVFNLQHRGASKSFLAECEALKSIRHRNLVRILSACSGVDFQGNDFMALVFDFMVNGSLEKWLHPVDNLNQEGEQRYLNIMQRLDIAIDVASALDYLHNGTHIPIAHCDLKPSNVLLDANMIAHVGDFGLAKFMAGTPFQNRSTESGSIGIRGTVGYAPPEYAMGSKVSTHGDVYSYGILLLEMFTGNSPTDNMFKDGLTLNNYVLTALPERVQEIADPTMGLQALNGISNNNNMLNNNHVLEALPDQLEQMGDPKLSLQEREGTGNQNLMVQANESLRIKECLFSIFSIGVVCSAPMPSVKCSSQQRVTELNLPSYRFIGQLSPSIGNLSFLTTLSLHNNSFRGEIPQEIGSLSKLQILELDNYYFVGEIPTAIFNCSKFQYIGFLRNNLTGMLPMELGLLTKLQVFELSSNQLLGEIPEAFGNLSSLRGFWAPQNHFHGSIPTSFGQLKNLTVLSIGSNNLTGTIPSSIYNLSSIRIFSLPGKCLAWLTCEILRTLHFLKSLGFRDDHDLNFLFSLVNCSNLSIVVISDNNFGGALPECISNFSTKLTIVGIGRNHIHGTIPTEIGNLFQLGALGMETNQLTGSIPSSLGKLKKLNDLFLNGNKLSGAIPQSLRNLSALGRCNLRLNNLTGAIPPSPGEIQNLLMLALSQNQLSSAIPKELLSISSLSIALDLSKNYLTGSIPMEVGKLVNLGYLHISDNRLTGVIPSTLSACTSLEDLHLDGNFLEGPIPQSLSFLRGKKRSTSDLRPSLKAPYFVVSYNDLLKATNGFSPNNLIGVGGYGSVYKGILSQDESVLSVKVFNLQHRGASKSFLAECEALKSIRHRNLVRILSACSGVDFQGNHFMALVFDFMVNGSLEKWLHPVDNLNQEEEQRYLNIMQRLDIAIEVASALDYLHNGSHIPIAHCDLKPSNVLLDANMTAHVGDFGLAKFMVGTSFQNKSTESGSIGIRGTVGYAPP 1699
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6840316 6850882 - CcPI632755_11g006300.1 Cco11g0630 191866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g0630 1699 ProSitePatterns Protein kinases ATP-binding region signature. 717 740 IPR017441 GO:0005524(InterPro)
Cco11g0630 1699 Gene3D Ribonuclease Inhibitor 340 644 IPR032675 -
Cco11g0630 1699 Gene3D Ribonuclease Inhibitor 1158 1248 IPR032675 -
Cco11g0630 1699 Gene3D Phosphorylase Kinase; domain 1 1503 1592 - -
Cco11g0630 1699 SUPERFAMILY Protein kinase-like (PK-like) 1488 1699 IPR011009 -
Cco11g0630 1699 PANTHER OS04G0122200 PROTEIN 1039 1476 IPR051809 -
Cco11g0630 1699 SUPERFAMILY L domain-like 1230 1478 - -
Cco11g0630 1699 SMART serkin_6 711 981 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco11g0630 1699 Pfam Leucine rich repeat N-terminal domain 38 77 IPR013210 -
Cco11g0630 1699 SUPERFAMILY L domain-like 39 332 - -
Cco11g0630 1699 Pfam Protein kinase domain 714 932 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco11g0630 1699 Pfam Protein kinase domain 1514 1681 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco11g0630 1699 Gene3D Transferase(Phosphotransferase) domain 1 1593 1699 - -
Cco11g0630 1699 SUPERFAMILY L domain-like 1037 1286 - -
Cco11g0630 1699 Pfam Leucine rich repeat 545 604 IPR001611 GO:0005515(InterPro)
Cco11g0630 1699 Gene3D Ribonuclease Inhibitor 1022 1157 IPR032675 -
Cco11g0630 1699 Gene3D Ribonuclease Inhibitor 37 195 IPR032675 -
Cco11g0630 1699 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 75 341 - -
Cco11g0630 1699 FunFam LRR receptor-like serine/threonine-protein kinase EFR 1482 1592 - -
Cco11g0630 1699 FunFam LRR receptor-like serine/threonine-protein kinase EFR 342 646 - -
Cco11g0630 1699 Gene3D Ribonuclease Inhibitor 271 339 IPR032675 -
Cco11g0630 1699 SUPERFAMILY L domain-like 347 630 - -
Cco11g0630 1699 SMART LRR_sd22_2 1430 1462 - -
Cco11g0630 1699 SMART LRR_sd22_2 223 249 - -
Cco11g0630 1699 SMART LRR_sd22_2 422 448 - -
Cco11g0630 1699 SMART LRR_sd22_2 1333 1359 - -
Cco11g0630 1699 SMART LRR_sd22_2 1189 1215 - -
Cco11g0630 1699 SMART LRR_sd22_2 1141 1167 - -
Cco11g0630 1699 SMART LRR_sd22_2 175 201 - -
Cco11g0630 1699 SMART LRR_sd22_2 127 153 - -
Cco11g0630 1699 SMART LRR_sd22_2 519 551 - -
Cco11g0630 1699 SMART LRR_sd22_2 567 590 - -
Cco11g0630 1699 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1644 1656 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco11g0630 1699 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 969 1227 - -
Cco11g0630 1699 SMART LRR_typ_2 175 198 IPR003591 -
Cco11g0630 1699 SMART LRR_typ_2 1381 1405 IPR003591 -
Cco11g0630 1699 SMART LRR_typ_2 591 616 IPR003591 -
Cco11g0630 1699 SMART LRR_typ_2 422 446 IPR003591 -
Cco11g0630 1699 SMART LRR_typ_2 519 543 IPR003591 -
Cco11g0630 1699 SMART LRR_typ_2 1189 1213 IPR003591 -
Cco11g0630 1699 SMART LRR_typ_2 567 590 IPR003591 -
Cco11g0630 1699 SMART LRR_typ_2 1069 1093 IPR003591 -
Cco11g0630 1699 SMART LRR_typ_2 1141 1164 IPR003591 -
Cco11g0630 1699 SMART LRR_typ_2 1333 1356 IPR003591 -
Cco11g0630 1699 SMART LRR_typ_2 127 151 IPR003591 -
Cco11g0630 1699 SMART LRR_typ_2 1430 1453 IPR003591 -
Cco11g0630 1699 SMART LRR_typ_2 103 126 IPR003591 -
Cco11g0630 1699 ProSiteProfiles Protein kinase domain profile. 1511 1699 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco11g0630 1699 Gene3D Ribonuclease Inhibitor 1411 1502 IPR032675 -
Cco11g0630 1699 SUPERFAMILY Protein kinase-like (PK-like) 688 947 IPR011009 -
Cco11g0630 1699 FunFam LRR receptor-like serine/threonine-protein kinase EFR 681 792 - -
Cco11g0630 1699 ProSitePatterns Serine/Threonine protein kinases active-site signature. 844 856 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco11g0630 1699 Gene3D Ribonuclease Inhibitor 1256 1330 IPR032675 -
Cco11g0630 1699 Gene3D Ribonuclease Inhibitor 1331 1410 IPR032675 -
Cco11g0630 1699 Pfam Leucine Rich Repeat 1143 1165 IPR001611 GO:0005515(InterPro)
Cco11g0630 1699 Pfam Leucine Rich Repeat 106 127 IPR001611 GO:0005515(InterPro)
Cco11g0630 1699 Pfam Leucine Rich Repeat 521 542 IPR001611 GO:0005515(InterPro)
Cco11g0630 1699 Pfam Leucine Rich Repeat 1191 1213 IPR001611 GO:0005515(InterPro)
Cco11g0630 1699 Pfam Leucine Rich Repeat 177 199 IPR001611 GO:0005515(InterPro)
Cco11g0630 1699 Pfam Leucine Rich Repeat 129 151 IPR001611 GO:0005515(InterPro)
Cco11g0630 1699 Pfam Leucine Rich Repeat 425 446 IPR001611 GO:0005515(InterPro)
Cco11g0630 1699 Pfam Leucine Rich Repeat 1072 1093 IPR001611 GO:0005515(InterPro)
Cco11g0630 1699 Pfam Leucine Rich Repeat 1432 1453 IPR001611 GO:0005515(InterPro)
Cco11g0630 1699 Gene3D Ribonuclease Inhibitor 204 270 IPR032675 -
Cco11g0630 1699 ProSiteProfiles Protein kinase domain profile. 711 982 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco11g0630 1699 Gene3D Transferase(Phosphotransferase) domain 1 698 974 - -
Cco11g0630 1699 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 1256 1483 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco10g2181 Cco-Chr10:34947520 Cco11g0630 Cco-Chr11:6840316 1.10E-56 dispersed
Cco11g0630 Cco-Chr11:6840316 Cco05g0956 Cco-Chr5:8373359 1.70E-40 dispersed
Cco11g0630 Cco-Chr11:6840316 Cco11g0631 Cco-Chr11:6864065 3.70E-200 tandem
Cco10g2121 Cco-Chr10:34459737 Cco11g0630 Cco-Chr11:6840316 6.40E-76 transposed
Cco10g2178 Cco-Chr10:34929885 Cco11g0630 Cco-Chr11:6840316 4.90E-21 wgd
Cco10g2222 Cco-Chr10:35234425 Cco11g0630 Cco-Chr11:6840316 2.90E-35 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87231 PF00069 Pkinase 8.00E-39 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g0630 - - - 0.0