Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco11g0657 | ATGACGACGATCCAAAACTCCCGCGTTGTCGCAATGGATGTAGAACGACAACAAGAACAAGAACGGCCTTGCCCACTTTCCGCCGCTCCCACCGACTCCTCACCGGCCTCCGATGATGTGCGGCGGTGCTCGGCCCAGTCCAGGGCTGACATTCTGGAGGAGGCGGTGGCGGAGAAAAGAAGGAGATCCTCTGTCTCGGAGTGCTCTGTCGAGATGGATCTGGAATGTGGGTTGGCTGAGATTAAGGTGCATTTGGCGAAAATCGAGAGGGATTGCCGGATTTGTCATCTGAGTTTGGATGCTTCTAATCACGAATCTGGAATCCCCATTGAGTTGGGTTGTTCTTGTAAGGATGATTTGGCTGCTGCTCATAAGCAGTGTGCCGAGGCTTGGTTCAAGATAAAGGGCGACATCACATGTGAGATCTGTGGATCAATTGCACACAATGTTACTGGTACTTACGAAGCCGATTCAACAGAGCAGCGCAACGAGTCAAACGAAGCAACAACAGCAACTGCTACAGCTGCTGTCGTGATGCCACTGCACTCTACAGAGGTTCGGAACTTCTGGCAGGGCCACAGGTTTATATTATATGATTGGGCTTTGTATTGTTTTAAAGAAAACAGACAGGTTGATGTTCGAAAAGATGCTGAAACGGCTCAGCCTAGCTGGATTGGCCATCTTGTCTCTTGTCGTCTCATTGTGGATAATTCTCCGTTGAGATTCCGACATGTAGTTCCTTCTATACCAACAAAATCGGATTTGGGTCTCAAAATAATTAATGTTAAAAACTGA | 795 | 48.3 | MTTIQNSRVVAMDVERQQEQERPCPLSAAPTDSSPASDDVRRCSAQSRADILEEAVAEKRRRSSVSECSVEMDLECGLAEIKVHLAKIERDCRICHLSLDASNHESGIPIELGCSCKDDLAAAHKQCAEAWFKIKGDITCEICGSIAHNVTGTYEADSTEQRNESNEATTATATAAVVMPLHSTEVRNFWQGHRFILYDWALYCFKENRQVDVRKDAETAQPSWIGHLVSCRLIVDNSPLRFRHVVPSIPTKSDLGLKIINVKN | 264 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 7169325 | 7172390 | + | CcPI632755_11g006570.1 | Cco11g0657 | 191893 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco11g0657 | 264 | SUPERFAMILY | RING/U-box | 89 | 146 | - | - | |
Cco11g0657 | 264 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 84 | 150 | IPR011016 | GO:0008270(InterPro) | |
Cco11g0657 | 264 | SMART | ringv_2 | 91 | 144 | IPR011016 | GO:0008270(InterPro) | |
Cco11g0657 | 264 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 79 | 153 | IPR013083 | - | |
Cco11g0657 | 264 | PANTHER | ZINC FINGER, RING-CH-TYPE | 17 | 197 | - | - | |
Cco11g0657 | 264 | Pfam | RING-variant domain | 92 | 143 | IPR011016 | GO:0008270(InterPro) | |
Cco11g0657 | 264 | MobiDBLite | consensus disorder prediction | 1 | 40 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco04g2165 | Cco-Chr4:35394101 | Cco11g0657 | Cco-Chr11:7169325 | 6.00E-17 | dispersed | |
Cco11g0657 | Cco-Chr11:7169325 | Cco11g1719 | Cco-Chr11:30027020 | 2.70E-09 | dispersed | |
Cco04g0291 | Cco-Chr4:8546801 | Cco11g0657 | Cco-Chr11:7169325 | 6.90E-09 | transposed | |
Cco11g0657 | Cco-Chr11:7169325 | Cco03g0107 | Cco-Chr3:1114517 | 1.50E-28 | wgd | |
Cco11g0657 | Cco-Chr11:7169325 | Cco04g0927 | Cco-Chr4:24951615 | 4.30E-31 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco11g0657 | - | - | - | 0.0 |