Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g0657 ATGACGACGATCCAAAACTCCCGCGTTGTCGCAATGGATGTAGAACGACAACAAGAACAAGAACGGCCTTGCCCACTTTCCGCCGCTCCCACCGACTCCTCACCGGCCTCCGATGATGTGCGGCGGTGCTCGGCCCAGTCCAGGGCTGACATTCTGGAGGAGGCGGTGGCGGAGAAAAGAAGGAGATCCTCTGTCTCGGAGTGCTCTGTCGAGATGGATCTGGAATGTGGGTTGGCTGAGATTAAGGTGCATTTGGCGAAAATCGAGAGGGATTGCCGGATTTGTCATCTGAGTTTGGATGCTTCTAATCACGAATCTGGAATCCCCATTGAGTTGGGTTGTTCTTGTAAGGATGATTTGGCTGCTGCTCATAAGCAGTGTGCCGAGGCTTGGTTCAAGATAAAGGGCGACATCACATGTGAGATCTGTGGATCAATTGCACACAATGTTACTGGTACTTACGAAGCCGATTCAACAGAGCAGCGCAACGAGTCAAACGAAGCAACAACAGCAACTGCTACAGCTGCTGTCGTGATGCCACTGCACTCTACAGAGGTTCGGAACTTCTGGCAGGGCCACAGGTTTATATTATATGATTGGGCTTTGTATTGTTTTAAAGAAAACAGACAGGTTGATGTTCGAAAAGATGCTGAAACGGCTCAGCCTAGCTGGATTGGCCATCTTGTCTCTTGTCGTCTCATTGTGGATAATTCTCCGTTGAGATTCCGACATGTAGTTCCTTCTATACCAACAAAATCGGATTTGGGTCTCAAAATAATTAATGTTAAAAACTGA 795 48.3 MTTIQNSRVVAMDVERQQEQERPCPLSAAPTDSSPASDDVRRCSAQSRADILEEAVAEKRRRSSVSECSVEMDLECGLAEIKVHLAKIERDCRICHLSLDASNHESGIPIELGCSCKDDLAAAHKQCAEAWFKIKGDITCEICGSIAHNVTGTYEADSTEQRNESNEATTATATAAVVMPLHSTEVRNFWQGHRFILYDWALYCFKENRQVDVRKDAETAQPSWIGHLVSCRLIVDNSPLRFRHVVPSIPTKSDLGLKIINVKN 264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 7169325 7172390 + CcPI632755_11g006570.1 Cco11g0657 191893
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g0657 264 SUPERFAMILY RING/U-box 89 146 - -
Cco11g0657 264 ProSiteProfiles Zinc finger RING-CH-type profile. 84 150 IPR011016 GO:0008270(InterPro)
Cco11g0657 264 SMART ringv_2 91 144 IPR011016 GO:0008270(InterPro)
Cco11g0657 264 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 79 153 IPR013083 -
Cco11g0657 264 PANTHER ZINC FINGER, RING-CH-TYPE 17 197 - -
Cco11g0657 264 Pfam RING-variant domain 92 143 IPR011016 GO:0008270(InterPro)
Cco11g0657 264 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g2165 Cco-Chr4:35394101 Cco11g0657 Cco-Chr11:7169325 6.00E-17 dispersed
Cco11g0657 Cco-Chr11:7169325 Cco11g1719 Cco-Chr11:30027020 2.70E-09 dispersed
Cco04g0291 Cco-Chr4:8546801 Cco11g0657 Cco-Chr11:7169325 6.90E-09 transposed
Cco11g0657 Cco-Chr11:7169325 Cco03g0107 Cco-Chr3:1114517 1.50E-28 wgd
Cco11g0657 Cco-Chr11:7169325 Cco04g0927 Cco-Chr4:24951615 4.30E-31 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g0657 - - - 0.0