Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g0678 ATGGCATCCATTTCGAAACGGCTACTCCTCTTCGCGGCGGCGCTACTCGCCACCGCTGAAATCGCAACCTCCCTCACCCGATGCCCGGACTGCGGCGGCGCTTCCGTCCCCTATCCTCTGAGTACAAGCCCCACATGTGGGGACCAATCGTATAAGATCCGGTGCGACGCAGGCTCACTGAAATTCAACACGCTGAACAACACGTACCCGATCATCTCGATCAACCCGTCGATCCAACGGCTGGTGATTCAGCCCTCAAATTTCCTCCCGAACGCATGTGTGACAGCGGATATCGCTCACGACGGAATCAAATTGAACAGTAGTTTACCCTTCAACGTGACGAGCGGGAACACGATCCTGTACTTCAACTGTACGGATTCGCTTCTGCGCTCGCCGTTGAACTGCTCGTCGACGAGTCTGTGCCATTCGTACATCAACGGGTCAAGAGGAGCGGCGGCGTGCGAGGCGGCGCCGCTGTGCTGCACGTTTCGGGCGGGTGGGTCGTCGAATTCGTACATGATTCGGGTGAGGGAATCGGGGTGTAGCGCGTACACGAGCTTTGTGAACTTGAACCCGAGTTTGGGAGTGGTTCCGTGGCCCGAACCCGGGTTGGAGCTGCAGTGGCTTTTGCCGAGGGAGCCGGTTTGTAATACGCAGGCTGATTGTGATGTGAACGCGGTTTGTGGTGTTGACCCGAGTGGGACGGCGTTGAGACGCTGTCTTTGTAAGTCTGGGTTTGTGTGGGACCCTGTTGCTGGAATCTGCTCTCAAAATACGTGTCATGATCCTGATGGTTGTAGTAAGCACCGAACTGCACTGATAGCTGGCATTGTATCCGGCGTGGGCGCGGCGTTGATCATCTCAACAATAGCAATGCTAGTGTACAATCGGCATAGAAGAGCGAAAGAAGCTCAAGATCGTTTAACAAAGGAGCGTGAAGCCATTCTGAATTCCAACGGCGGAGGCGGAAGGGCGGCAAAGATCTTCACCGGTAAAGAGATCAAGAGGGCCACCCACAACTTCTCCGTCGACCACCTTCTGGGTGTCGGCGGCTACGGTGAGGTCTACAAAGGCGTTCTCGGGGACGGAACCACTGTGGCCGTGAAGTGCGCCAAGCTCGGAAACGCAAAAGGGACCGACCAAGTCCTGAATGAGGTCCGAATCCTGTGCCAAGTTAACCACCGGAGTCTTGTCCGGCTCCTTGGCTGCTGCGTCGAACTAGAACAGCCAATTTTGGTGTACGAGTATATTCCCAACGGCACTCTGCTCGACCATTTACAAGGTATTAAAGACACGAGGCCACTATCATGGGAGGAACGACTCCGAATTGCGCAGGGCACAGCAGAGGGACTAGCATATCTTCATTTCTCAGCAGTTCCACCCATCTACCACCGAGACGTCAAATCTAGCAACATCCTCTTAGACCACAAGCTAATCCCCAAAGTTTCAGATTTCGGGCTCTCCCGATTGGCAGAAACAGATCTAAGCCATATCTCAACTTGTGCCCAAGGAACTCTAGGCTACCTGGACCCCGAGTACTATCGAAACTACCAATTGACGGACAAGAGCGACGTGTACAGCTTTGGAGTGGTTCTGCTTGAGCTATTGACGTCACAAAAGGCCATCGACTTCGGTCGTGAGGCTGACGACGTCAACTTGGCAGTTTATGTGCAACGACTGGTGGAGGAAGAGAGGTTGGTGGATGCCATTGATCCGTGGCTGAAGAAGGGAGCTACAGATGTGGAGGTTGATACGATGAAGGCTTTGGGGTTCCTTGCAGTGGGGTGCTTGGAACAGAGAAGGCAGAACCGACCTTCTATGAAAGAAGTGGTGGAGGAGATTCAATACATCATTAGCATCGCTATTGCCAAGGCTTAA 1878 53.73 MASISKRLLLFAAALLATAEIATSLTRCPDCGGASVPYPLSTSPTCGDQSYKIRCDAGSLKFNTLNNTYPIISINPSIQRLVIQPSNFLPNACVTADIAHDGIKLNSSLPFNVTSGNTILYFNCTDSLLRSPLNCSSTSLCHSYINGSRGAAACEAAPLCCTFRAGGSSNSYMIRVRESGCSAYTSFVNLNPSLGVVPWPEPGLELQWLLPREPVCNTQADCDVNAVCGVDPSGTALRRCLCKSGFVWDPVAGICSQNTCHDPDGCSKHRTALIAGIVSGVGAALIISTIAMLVYNRHRRAKEAQDRLTKEREAILNSNGGGGRAAKIFTGKEIKRATHNFSVDHLLGVGGYGEVYKGVLGDGTTVAVKCAKLGNAKGTDQVLNEVRILCQVNHRSLVRLLGCCVELEQPILVYEYIPNGTLLDHLQGIKDTRPLSWEERLRIAQGTAEGLAYLHFSAVPPIYHRDVKSSNILLDHKLIPKVSDFGLSRLAETDLSHISTCAQGTLGYLDPEYYRNYQLTDKSDVYSFGVVLLELLTSQKAIDFGREADDVNLAVYVQRLVEEERLVDAIDPWLKKGATDVEVDTMKALGFLAVGCLEQRRQNRPSMKEVVEEIQYIISIAIAKA 625
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 7388175 7391232 - CcPI632755_11g006780.1 Cco11g0678 191914
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g0678 625 FunFam Wall-associated receptor kinase-like 20 417 625 - -
Cco11g0678 625 SUPERFAMILY Protein kinase-like (PK-like) 327 613 IPR011009 -
Cco11g0678 625 ProSitePatterns Serine/Threonine protein kinases active-site signature. 462 474 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco11g0678 625 ProSitePatterns Protein kinases ATP-binding region signature. 347 369 IPR017441 GO:0005524(InterPro)
Cco11g0678 625 Gene3D Phosphorylase Kinase; domain 1 317 416 - -
Cco11g0678 625 CDD STKc_IRAK 347 615 - -
Cco11g0678 625 SMART serkin_6 341 617 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco11g0678 625 Gene3D Transferase(Phosphotransferase) domain 1 417 622 - -
Cco11g0678 625 Pfam Protein tyrosine and serine/threonine kinase 343 613 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco11g0678 625 FunFam Wall-associated receptor kinase-like 20 302 416 - -
Cco11g0678 625 ProSiteProfiles Protein kinase domain profile. 341 617 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco11g0678 625 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 29 617 IPR044652 GO:0004672(InterPro)|GO:0016301(PANTHER)|GO:0016310(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g1727 Cco-Chr8:28567219 Cco11g0678 Cco-Chr11:7388175 1.80E-79 dispersed
Cco10g1945 Cco-Chr10:33008027 Cco11g0678 Cco-Chr11:7388175 3.10E-161 dispersed
Cco11g0678 Cco-Chr11:7388175 Cco11g0893 Cco-Chr11:11755436 7.20E-77 dispersed
Cco11g0678 Cco-Chr11:7388175 Cco04g0984 Cco-Chr4:25434282 2.50E-186 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87233 PF00069 Pkinase 7.00E-44 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g0678 - - - 0.0