Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g0685 ATGGCGGATAGATGTTGGGGTGGAATTGGGAATCTTGCACACACAGAACAAGAACACGGTACTAAGAATGAAGATGAGGATGGAATTAAAACCAAGAGACGGCCACGAGGGAGACCACCAGGCTCAAAAAACAAGCCAAAGCCACCCATTGTAATCACTAAACACACTCCCAATGCCTTCCAAACCCACGTTTTCGAAATCACCACCGCCACCGACATTGCCCACTCCATTTCCACTTTCGCCCACCGCCGCCACCGTGGGGTTTCCATTCTCAGCGCCACCGGCCTCGTCGCTGACGTCACTCTCCGACAACCCCCCGGCGTCATTACCCTCCACGAACGCTTCGAGATTTTATCTCTCTCTGGCGCTTTCCTCCCCACACCCTCCCCCCACGGGGCTACCGCCTTGACCGTCTATCTCGCCGGCGGCCAAGGCCGGGTCGTTGGAGGCCTCGTCGCCGGTCCCCTCATCGCCGCCGGCCCCGTCATTGTAGTTGCAGCTTCATTTACCAACGCTATGTATGAAAAATTACCGATTGAAGAAGATGAAGAGAATGCAGAGGAAAAGAAATTGAAAGAAGAAAATACTAATGGAAATAATTCAGTGGGAGAATCATCATCAGTAATAGCAGCAGCAGCATCCGCAACAACTTCTTTGCCAGTTTATAATTTGATTCCTAATATTCAAATTTCACAAGAAATGTTTTGGGCTCCTCTTCCTCTTCCTCCTCCATCTTATTAA 741 50.34 MADRCWGGIGNLAHTEQEHGTKNEDEDGIKTKRRPRGRPPGSKNKPKPPIVITKHTPNAFQTHVFEITTATDIAHSISTFAHRRHRGVSILSATGLVADVTLRQPPGVITLHERFEILSLSGAFLPTPSPHGATALTVYLAGGQGRVVGGLVAGPLIAAGPVIVVAASFTNAMYEKLPIEEDEENAEEKKLKEENTNGNNSVGESSSVIAAAASATTSLPVYNLIPNIQISQEMFWAPLPLPPPSY 246
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 7455160 7455900 + CcPI632755_11g006850.1 Cco11g0685 191921
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g0685 246 PIRSF ESCAROLA 9 238 IPR014476 GO:0003680(InterPro)
Cco11g0685 246 MobiDBLite consensus disorder prediction 1 53 - -
Cco11g0685 246 Gene3D - 61 189 - -
Cco11g0685 246 Coils Coil 179 199 - -
Cco11g0685 246 MobiDBLite consensus disorder prediction 182 203 - -
Cco11g0685 246 CDD DUF296 61 169 IPR005175 -
Cco11g0685 246 Pfam Plants and Prokaryotes Conserved (PCC) domain 61 170 IPR005175 -
Cco11g0685 246 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 17 238 IPR014476 GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cco11g0685 246 SUPERFAMILY AF0104/ALDC/Ptd012-like 57 183 - -
Cco11g0685 246 MobiDBLite consensus disorder prediction 17 34 - -
Cco11g0685 246 ProSiteProfiles PPC domain profile profile. 57 192 IPR005175 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco09g1233 Cco-Chr9:12556308 Cco11g0685 Cco-Chr11:7455160 1.10E-50 dispersed
Cco10g0179 Cco-Chr10:1738579 Cco11g0685 Cco-Chr11:7455160 1.10E-47 dispersed
Cco11g0685 Cco-Chr11:7455160 Cco11g1503 Cco-Chr11:27851611 2.80E-32 dispersed
Cco11g0685 Cco-Chr11:7455160 Cco07g0348 Cco-Chr7:3666747 1.70E-53 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g0685 - - - 0.0