Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g0691 ATGATATGGGGCATGGGTTGTTCGCCTGCCTCACTCGGAAGCGAAACGAAAGACGGGTCAGACAGCAACTCAACGCGTCCGAGTCACCTCCCTCACTCGACTCGCTCCCTCATCTTCTCCGTCGTCACACCACATCCGGGTTTTTCATTTTCACACAATTTTAAGAGACCCCATCATCAAGACTTTTCGATTCAAAGCAAACCTTGTCGTTTTTGGTCCTACACAATCAACCCCATTTACTCGATTCTGTTCTACATGAGTTTTGTTTTCCGTGGAACGAGAGTTCCAGACATTGAAAATGGTCTATCTGGATTTATACCCGAACGACGTGCAATGCGGGTTCATGCAGCACGTCCTGTTAACTCAAACTCACTTGCCTTTCTTGTCACAGTCCTTTTGTTATTCATGATATTAAATTCTCACCAGATGTCACCGAACTTTCTGCTCTGGCTTGTGCTTGGTGTCTTTTTGATGGCTACAACATTAAGGATGTACGCAACTTGTCAACAACTTCAGGCTCAAGCCCAAGCTAGAGCTATGGCAGCCAGTGGCCTTCTCGGTCACACTGAATTGAGGTTACATATGCCACCATCAATAGCACTTGCAACTAGAGGGCGTTTACAGGGGCTAAGGCTTCAACTTGCTCTGCTAGATCGAGAATTCGATGATCTAGATTATGAAACTTTGAGAGCTTTGGATTCTGACAATGCTCCGACAACACCTTCTATGAGTGAGGAACAAATCAATGCTCTTCCCGTTCATAAATACAAGGTTTCTGGTCCTCAAAGCGACCCCTCTGTAAATCAGCAGGCTTCATCTTCAGAATCTAACGAGAAGAGACAAGATTCAGTTAATGCAGTTGGGGGTACCAAGACCTCTGAGGATGAACTCACATGCAGTGTTTGCTTGGAGCAAGTAAATGTTGGTGAACTCATACGTAGTTTGCCATGTTTACATCAGTTCCATGCCAACTGCATAGATCCATGGCTGCGACAGCAGGGAACGTGCCCTGTTTGTAAATTCCGAGCGGTGTCTGGGTGGTCAGAGCAGGGGCAAGGAGAAACCGATGCTTATATGGTTTAA 1083 45.98 MIWGMGCSPASLGSETKDGSDSNSTRPSHLPHSTRSLIFSVVTPHPGFSFSHNFKRPHHQDFSIQSKPCRFWSYTINPIYSILFYMSFVFRGTRVPDIENGLSGFIPERRAMRVHAARPVNSNSLAFLVTVLLLFMILNSHQMSPNFLLWLVLGVFLMATTLRMYATCQQLQAQAQARAMAASGLLGHTELRLHMPPSIALATRGRLQGLRLQLALLDREFDDLDYETLRALDSDNAPTTPSMSEEQINALPVHKYKVSGPQSDPSVNQQASSSESNEKRQDSVNAVGGTKTSEDELTCSVCLEQVNVGELIRSLPCLHQFHANCIDPWLRQQGTCPVCKFRAVSGWSEQGQGETDAYMV 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 7524732 7528922 + CcPI632755_11g006910.1 Cco11g0691 191927
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g0691 360 MobiDBLite consensus disorder prediction 261 290 - -
Cco11g0691 360 CDD RING-H2_PA-TM-RING 298 340 - -
Cco11g0691 360 MobiDBLite consensus disorder prediction 13 32 - -
Cco11g0691 360 SUPERFAMILY RING/U-box 293 346 - -
Cco11g0691 360 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 232 344 IPR013083 -
Cco11g0691 360 MobiDBLite consensus disorder prediction 1 32 - -
Cco11g0691 360 Pfam Ring finger domain 298 340 IPR001841 -
Cco11g0691 360 SMART ring_2 299 339 IPR001841 -
Cco11g0691 360 MobiDBLite consensus disorder prediction 256 290 - -
Cco11g0691 360 ProSiteProfiles Zinc finger RING-type profile. 299 340 IPR001841 -
Cco11g0691 360 PANTHER TARGET OF ERK KINASE MPK-1 87 343 - GO:0006511(PANTHER)|GO:0016567(PANTHER)|GO:0061630(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g0253 Cco-Chr7:2595050 Cco11g0691 Cco-Chr11:7524732 1.90E-10 dispersed
Cco08g0954 Cco-Chr8:21416596 Cco11g0691 Cco-Chr11:7524732 2.50E-08 dispersed
Cco11g0691 Cco-Chr11:7524732 Cco10g1805 Cco-Chr10:31646214 7.00E-08 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g0691 K16283 - csv:101216306 502.286