Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g0728 ATGGCAGCCATGGCAATGCGAGTGGTGCTGTCATTGACTCTTCTCTTCATTCTCATTGGGGTTGCCCAGGCCCAGCTCTCCCTCAACTTCTACAATTCAACGTGCCCAAATGTCGAACAAATCGTTCGCCAGGCCGTCACCCTAAAGTTTAACCAAACATTCGTTACTGTTCCCGCAACTCTAAGGCTCTTCTTCCATGACTGCTTTGTTCAGGGATGTGATGCTTCGGTTATGATAGCATCCGCAAGTGGTGATGCAGAAAAAGACGCCGAGGACAACTTGTCGTTGGCAGGAGATGGATTTGATACCGTGGTTAAAGCTAAACAAGCAGTGGAAGCTCAATGTCCTGGAATAGTATCATGTGCGGATGTATTAGCCATCGCTGCAAGGGACGTTGTGGTTTTGGCAAGGGGGCCAAATTTCGCTGTGGAATTAGGACGGCGAGACGGGCTAATCTCGAAAGCATCTTTAGTAGCCGGAAACTTACCGGGACCAAACTTCAACCTGAGCGAATTAAATGCAATGTTCGCCAAAAACAACCTAACCCAAACCGAAATGATTGCGTTATCAGGAGCTCACACGGTTGGGTTCTCACATTGCAACCGTTTTGCGAACCGTCTTTACAACTTCTCGGCCACGTCTAATGTGGACCCTTCTCTGGACTCGGACTACGCCCAGCAGCTCATAGACGCCTGCCCACAAAACGTGGATCCCAGAGTGGCTGTGGACATGGACCCTATTACCCCAAGGAAAATGGATAATGTGTATTACCAAAATCTTGTGAACCACAAGGGGCTATTCACGTCGGATCAGGTGCTTTTTACGGACCCGTTGTCGCAACCGACGGTGAGTGGCTTTGCTAATGACAATCATGGGTTCAAGAAAGCGTTTGCCGCGGCTATGGTTCAGCTTGGGAGAGTGGGGGTTAAGACTGGGGTTTTGGGTGAGATTAGAACTGATTGTACTGCATTTAATTCCTAA 981 48.83 MAAMAMRVVLSLTLLFILIGVAQAQLSLNFYNSTCPNVEQIVRQAVTLKFNQTFVTVPATLRLFFHDCFVQGCDASVMIASASGDAEKDAEDNLSLAGDGFDTVVKAKQAVEAQCPGIVSCADVLAIAARDVVVLARGPNFAVELGRRDGLISKASLVAGNLPGPNFNLSELNAMFAKNNLTQTEMIALSGAHTVGFSHCNRFANRLYNFSATSNVDPSLDSDYAQQLIDACPQNVDPRVAVDMDPITPRKMDNVYYQNLVNHKGLFTSDQVLFTDPLSQPTVSGFANDNHGFKKAFAAAMVQLGRVGVKTGVLGEIRTDCTAFNS 326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 8021669 8023232 + CcPI632755_11g007280.1 Cco11g0728 191964
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g0728 326 Pfam Peroxidase 42 289 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco11g0728 326 Gene3D Peroxidase, domain 2 163 304 - -
Cco11g0728 326 ProSitePatterns Peroxidases proximal heme-ligand signature. 185 195 IPR019793 -
Cco11g0728 326 ProSitePatterns Peroxidases active site signature. 57 68 IPR019794 GO:0004601(InterPro)
Cco11g0728 326 PRINTS Plant peroxidase signature 137 152 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco11g0728 326 PRINTS Plant peroxidase signature 59 79 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco11g0728 326 PRINTS Plant peroxidase signature 118 128 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco11g0728 326 PRINTS Plant peroxidase signature 99 112 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco11g0728 326 PRINTS Plant peroxidase signature 299 312 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco11g0728 326 PRINTS Plant peroxidase signature 243 258 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco11g0728 326 PRINTS Plant peroxidase signature 259 276 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco11g0728 326 PRINTS Plant peroxidase signature 35 54 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco11g0728 326 PRINTS Plant peroxidase signature 184 196 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco11g0728 326 PANTHER - 11 325 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco11g0728 326 FunFam Peroxidase 29 171 - -
Cco11g0728 326 CDD secretory_peroxidase 25 324 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Cco11g0728 326 ProSiteProfiles Plant heme peroxidase family profile. 25 325 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco11g0728 326 Gene3D - 29 325 - -
Cco11g0728 326 SUPERFAMILY Heme-dependent peroxidases 25 325 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco11g0728 326 PRINTS Haem peroxidase superfamily signature 137 149 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco11g0728 326 PRINTS Haem peroxidase superfamily signature 119 136 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco11g0728 326 PRINTS Haem peroxidase superfamily signature 185 200 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco11g0728 326 PRINTS Haem peroxidase superfamily signature 57 71 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco11g0728 326 PRINTS Haem peroxidase superfamily signature 245 260 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco11g0728 326 FunFam Peroxidase 163 304 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0656 Cco-Chr3:6689126 Cco11g0728 Cco-Chr11:8021669 8.40E-75 dispersed
Cco05g0930 Cco-Chr5:8135915 Cco11g0728 Cco-Chr11:8021669 9.60E-70 dispersed
Cco05g1994 Cco-Chr5:29062166 Cco11g0728 Cco-Chr11:8021669 6.70E-103 dispersed
Cco11g0728 Cco-Chr11:8021669 Cco11g0730 Cco-Chr11:8065039 2.40E-124 dispersed
Cco11g0728 Cco-Chr11:8021669 Cco11g0729 Cco-Chr11:8032282 4.80E-117 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g0728 K00430 - csv:101213098 563.533