Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g0738 ATGGATCATCAGTTCCAAGAAGAAAGTAGTGTGAAAAAAACAAGTAGTGGATCTATGAAATCGGAGAAGAAGATAAGAAAAGGGAGATTTGCGTTTGAAACCAGGAGCCAAGTTGATGTGCTTGACGATGGCTATCGCTGGAGAAAATATGGTCAAAAGGCTGTTAAGAACGACAAGTTTCCCAGGAGCTACTACAAGTGTTCACATCAAGGATGCAAAGTGAAGAAGCAAATTCAACGGCTTACAAATGATGAAGGAGTGGTATTAACAACCTACGAAGGAGTTCATTCCCATCCCATCGAAACCCCTCAAGATACCTTTCAACATATCTTGACTCACATGCAAATTTACCCTTCTTCCTTTTAA 366 40.16 MDHQFQEESSVKKTSSGSMKSEKKIRKGRFAFETRSQVDVLDDGYRWRKYGQKAVKNDKFPRSYYKCSHQGCKVKKQIQRLTNDEGVVLTTYEGVHSHPIETPQDTFQHILTHMQIYPSSF 121
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 8139357 8140407 - CcPI632755_11g007380.1 Cco11g0738 191974
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g0738 121 SUPERFAMILY WRKY DNA-binding domain 34 100 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco11g0738 121 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 12 101 IPR044810 GO:0003700(InterPro)
Cco11g0738 121 ProSiteProfiles WRKY domain profile. 36 101 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco11g0738 121 SMART WRKY_cls 41 100 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco11g0738 121 Pfam WRKY DNA -binding domain 42 99 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco11g0738 121 Gene3D WRKY domain 25 101 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco11g0738 121 FunFam WRKY transcription factor 57 27 101 - -
Cco11g0738 121 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g1625 Cco-Chr7:30315596 Cco11g0738 Cco-Chr11:8139357 3.00E-42 dispersed
Cco11g0470 Cco-Chr11:5016895 Cco11g0738 Cco-Chr11:8139357 2.80E-23 dispersed
Cco11g0738 Cco-Chr11:8139357 Cco04g0998 Cco-Chr4:25564048 4.00E-16 dispersed
Cco11g0738 Cco-Chr11:8139357 Cco04g2216 Cco-Chr4:35774089 5.60E-26 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60257 PF03106 WRKY 2.40E-25 CL0274 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g0738 - - - 0.0