Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco11g0738 | ATGGATCATCAGTTCCAAGAAGAAAGTAGTGTGAAAAAAACAAGTAGTGGATCTATGAAATCGGAGAAGAAGATAAGAAAAGGGAGATTTGCGTTTGAAACCAGGAGCCAAGTTGATGTGCTTGACGATGGCTATCGCTGGAGAAAATATGGTCAAAAGGCTGTTAAGAACGACAAGTTTCCCAGGAGCTACTACAAGTGTTCACATCAAGGATGCAAAGTGAAGAAGCAAATTCAACGGCTTACAAATGATGAAGGAGTGGTATTAACAACCTACGAAGGAGTTCATTCCCATCCCATCGAAACCCCTCAAGATACCTTTCAACATATCTTGACTCACATGCAAATTTACCCTTCTTCCTTTTAA | 366 | 40.16 | MDHQFQEESSVKKTSSGSMKSEKKIRKGRFAFETRSQVDVLDDGYRWRKYGQKAVKNDKFPRSYYKCSHQGCKVKKQIQRLTNDEGVVLTTYEGVHSHPIETPQDTFQHILTHMQIYPSSF | 121 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 8139357 | 8140407 | - | CcPI632755_11g007380.1 | Cco11g0738 | 191974 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco11g0738 | 121 | SUPERFAMILY | WRKY DNA-binding domain | 34 | 100 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco11g0738 | 121 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 12 | 101 | IPR044810 | GO:0003700(InterPro) | |
Cco11g0738 | 121 | ProSiteProfiles | WRKY domain profile. | 36 | 101 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco11g0738 | 121 | SMART | WRKY_cls | 41 | 100 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco11g0738 | 121 | Pfam | WRKY DNA -binding domain | 42 | 99 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco11g0738 | 121 | Gene3D | WRKY domain | 25 | 101 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco11g0738 | 121 | FunFam | WRKY transcription factor 57 | 27 | 101 | - | - | |
Cco11g0738 | 121 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco07g1625 | Cco-Chr7:30315596 | Cco11g0738 | Cco-Chr11:8139357 | 3.00E-42 | dispersed | |
Cco11g0470 | Cco-Chr11:5016895 | Cco11g0738 | Cco-Chr11:8139357 | 2.80E-23 | dispersed | |
Cco11g0738 | Cco-Chr11:8139357 | Cco04g0998 | Cco-Chr4:25564048 | 4.00E-16 | dispersed | |
Cco11g0738 | Cco-Chr11:8139357 | Cco04g2216 | Cco-Chr4:35774089 | 5.60E-26 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
60257 | PF03106 | WRKY | 2.40E-25 | CL0274 | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco11g0738 | - | - | - | 0.0 |