Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g0792 ATGGAAGCTCTAAACAGTTGGAGGGAGACTCGGTTGTTTTATCTAGTTCATTTTACTCTTATGATTGGTCAACAGAGTATGAGCTCTTCATCAACTCAACTCTGTGCTTCAAGGATGGGCATCTATGAGCCATTTCACCAGATCAACTCATGGGCAAATGCATTCGGTAGTCGACTAGATACGAGCATATCACCTATTATAAAAGTGGATGACTGTGTAGACATTAAACCTGAGTTTGTTCCTTTTGAATCAATGGATCATCTCGAGAGCAGTCAAGAAATGAACAAGCCAATCGATGATAAGGTACAAAGACGTTTAGCACAAAATCGGGAAGCAGCTCGTAAAAGCCGTATGAGGAAAAAGGTTTATGTGCAGCAGTTAGAAACTAGCCGTTTGAAGCTGCGACTGTTGGAGCAGGAGCTAGAAAGAACTAAGCAACAGAAGGGTACCAGCTGCTTAGTAGATACCAGCCACTTCGGATTCAGCGGATTTGTAAACCCAGGGATTGCTGCATTTGAGATGGAATACAATCACTGGGTTGAAGAGCAACAGAGACAGATCACCGAACTCAGAAAGGCGTTGCAAGTTCATACAACTGATATAGAACTCCAAATTTTAGTGGAGAGCAGCTTAAACCATTACCACAATCTGTTTTGCATGAAAGCCAATGCTGCGAAGGCTGATGTTTTCTATTTAATGTCTGGTGTTTGGAGAACATCGGCAGAGCGTTTTTTCCACTGGATAGGAGGATTTCGCCCATCAGAGCTGCTAAACGTTCTGAAGCCATACTTTGAGCCATTAAATGAACAACAAAGAGCCGATATCCACAAGTTGCAACAGTCGTCTCGGCAAGCTGAAGATGCGCTCACACAGGGAATGGAAAAACTGCACCAGAATCTATCCCTCAGCATTGCCAGTGATCCTATAGGAAGCTATATTTCTCAGATGGGTGATGGAATGGAGAAACTAGAAGCACTGGAGAGCTTCGTAAGCCAGCCGAGTGTGTGTTACTCTTTTCTTGAACAGGCAGACCATCTCAGGCAACAAACTTTGAAGAGAATGTCTCACATCCTAACCACCAAACAGGCAGCACAAGGCTTGCTCGCTTTGGGCGAGTACTTCCACCGTCTCCGCATCCTCAGTTCGCTCTGGGCTACTCGACCTCGTGAACCTGCCTAG 1179 44.87 MEALNSWRETRLFYLVHFTLMIGQQSMSSSSTQLCASRMGIYEPFHQINSWANAFGSRLDTSISPIIKVDDCVDIKPEFVPFESMDHLESSQEMNKPIDDKVQRRLAQNREAARKSRMRKKVYVQQLETSRLKLRLLEQELERTKQQKGTSCLVDTSHFGFSGFVNPGIAAFEMEYNHWVEEQQRQITELRKALQVHTTDIELQILVESSLNHYHNLFCMKANAAKADVFYLMSGVWRTSAERFFHWIGGFRPSELLNVLKPYFEPLNEQQRADIHKLQQSSRQAEDALTQGMEKLHQNLSLSIASDPIGSYISQMGDGMEKLEALESFVSQPSVCYSFLEQADHLRQQTLKRMSHILTTKQAAQGLLALGEYFHRLRILSSLWATRPREPA 392
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9033724 9038403 + CcPI632755_11g007920.1 Cco11g0792 192028
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g0792 392 PANTHER TRANSCRIPTION FACTOR TGA9 27 391 - -
Cco11g0792 392 Coils Coil 127 147 - -
Cco11g0792 392 ProSiteProfiles DOG1 domain profile. 169 387 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Cco11g0792 392 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 104 119 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco11g0792 392 Pfam Seed dormancy control 186 261 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Cco11g0792 392 SMART brlzneu 97 150 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco11g0792 392 FunFam BZIP family transcription factor 100 150 - -
Cco11g0792 392 Pfam bZIP transcription factor 100 131 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco11g0792 392 Coils Coil 268 288 - -
Cco11g0792 392 Coils Coil 180 200 - -
Cco11g0792 392 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 99 143 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco11g0792 392 Gene3D - 100 152 - -
Cco11g0792 392 SUPERFAMILY Leucine zipper domain 101 142 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g1009 Cco-Chr7:23117585 Cco11g0792 Cco-Chr11:9033724 2.20E-94 dispersed
Cco10g1716 Cco-Chr10:30698412 Cco11g0792 Cco-Chr11:9033724 4.00E-65 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60260 PF14144 DOG1 1.60E-28 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g0792 K14431 - csv:101217648 687.952