Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g0793 ATGCAGAGATCGTGGCAAGTTGTGGTTGTTTTCCTCTTCTCAATCTCAGCACTGCCATCCTCTTCCTTTTCGAGCGCAGAGCTGCCGCTTACGGCGGACGGAAAGGTGTTGGAGCTCGACGAATCCAATTTCGATCTCGCCATTTCATCGTTTGATTACATATTGGTCGACTTTTACGCTCCATGGTGTGGCCACTGCAAGCGTCTTTCTCCGGAGTTGGACGCTGCTGCACCTCAGCTTGCCAAATTGAAGGAGCCTGTAGTTCTAGCAAAAGTGAATGCTGACAAGTTTACTAGTCTTGCTAAAAAATATGACGTTGATGCCTATCCCACAATCAAGATCTTCATGCACGGTGTCCCAGTAGACTATTATGGACCAAGGAAAGCAGAGTTACTTGCCCGTTATCTGAAGAAATTTGTTGCTCCAGATGTCTCAATTCTTGAGTCAGACTCATCAATTAATGAATTTGTTGAAGCTGCTGGGCCTTTCTTCCCTATCTATTTGGGTTTTGGTTTAGATGAGTCTGTTATTTCTAAATTCGCTATTAAGTACAAGAAAAAGGCCTGGTTTTCAGTGGCAAAGGGTTTCTCAGAGGATATGATGGTGTCTTATGATTTTGATAAAATTCCTGCTTTGGTTTCTATCCATCCAAATTACAACAATGAGCGGAGCATCTTTTATGGTCCCTTTGAAGAACAATTCTTGGAGGAATTCATCAAACAAAGTCTGTTCCCCCTTGTTCTGCCCATAAATTACGACACTCTTAAGCTACTAAAAGATGATGAGAGGAAAATAGCACTCACAATTGTGGAGGATGAGGGTGGTGACCAGACGAAGAATTTGATCAATTTATTAAAGGCTGCTGCATCTGCTAATCGTGACTTGGTGTTTGCTTATGTTGGGGCTAAACAGTGGGGAGAATTTGCTGATTCATTTGGGGACAAGAAGACCACACTGCCAAAAATGGTCATTTGGGACGGGGAGGACGATTACTTAATGGTCACTGGTTCAGAAAGCATCATTGGGAACGACCATGCATCCGAAATCTCGAAGTTTATTGAAGGATATAGGGAAGGGAGAACTGAAAAAAGAAGAGTTGCGGGTCCTGCATTTATTGGCTTCATAAACTCACTGATAGGCATCAGGACTGTATACATCATTGTAATTATTGTTGCAGGAATAATGCTTTACCAAAACCTCACCAAAGACGATAACGAATATCGCAGCATCGATACTCCTGCTAGGGACCAGGTGGAGCAAACTAGCAGCTCTACCTCACAGGTTGAAAGGACTGAATATAAGGCTGGTGACAAGGAAGATTGA 1323 43.01 MQRSWQVVVVFLFSISALPSSSFSSAELPLTADGKVLELDESNFDLAISSFDYILVDFYAPWCGHCKRLSPELDAAAPQLAKLKEPVVLAKVNADKFTSLAKKYDVDAYPTIKIFMHGVPVDYYGPRKAELLARYLKKFVAPDVSILESDSSINEFVEAAGPFFPIYLGFGLDESVISKFAIKYKKKAWFSVAKGFSEDMMVSYDFDKIPALVSIHPNYNNERSIFYGPFEEQFLEEFIKQSLFPLVLPINYDTLKLLKDDERKIALTIVEDEGGDQTKNLINLLKAAASANRDLVFAYVGAKQWGEFADSFGDKKTTLPKMVIWDGEDDYLMVTGSESIIGNDHASEISKFIEGYREGRTEKRRVAGPAFIGFINSLIGIRTVYIIVIIVAGIMLYQNLTKDDNEYRSIDTPARDQVEQTSSSTSQVERTEYKAGDKED 440
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9044002 9048594 + CcPI632755_11g007930.1 Cco11g0793 192029

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g0793 440 ProSiteProfiles Thioredoxin domain profile. 17 141 IPR013766 -
Cco11g0793 440 FunFam Protein disulfide-isomerase 5-2 24 140 - -
Cco11g0793 440 ProSitePatterns Thioredoxin family active site. 55 73 IPR017937 -
Cco11g0793 440 SUPERFAMILY Thioredoxin-like 243 363 IPR036249 -
Cco11g0793 440 PRINTS Thioredoxin family signature 54 62 - -
Cco11g0793 440 PRINTS Thioredoxin family signature 105 116 - -
Cco11g0793 440 PRINTS Thioredoxin family signature 62 71 - -
Cco11g0793 440 Gene3D Glutaredoxin 232 365 - -
Cco11g0793 440 PANTHER PROTEIN DISULFIDE ISOMERASE 27 361 - GO:0003756(PANTHER)|GO:0005783(PANTHER)|GO:0006457(PANTHER)|GO:0034976(PANTHER)
Cco11g0793 440 CDD PDI_a_family 37 136 - -
Cco11g0793 440 Pfam Thioredoxin-like domain 179 338 - -
Cco11g0793 440 MobiDBLite consensus disorder prediction 414 430 - -
Cco11g0793 440 Pfam Thioredoxin 36 137 IPR013766 -
Cco11g0793 440 SUPERFAMILY Thioredoxin-like 28 139 IPR036249 -
Cco11g0793 440 Gene3D Glutaredoxin 23 151 - -
Cco11g0793 440 MobiDBLite consensus disorder prediction 411 440 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g0793 K09580 - - csv:101217891 781.941
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g1386 Cco-Chr7:27953433 Cco11g0793 Cco-Chr11:9044002 4.20E-17 dispersed
Cco09g0516 Cco-Chr9:4529410 Cco11g0793 Cco-Chr11:9044002 1.10E-16 dispersed
Cco11g0793 Cco-Chr11:9044002 Cco08g0717 Cco-Chr8:18741156 6.50E-24 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g296 . Blo12g00677 . . . . . . . . . Cma09g00809 . . . Cpe06g00643 . . . . . . . . . . . . . . . . . . . Lsi04g02376 Csa04g01817 . . . . . . . . . . . . Cmo09g00802 . . . Car09g00724 . . Bhi09g02649 . . . . . . Cla11g00771 Cam11g0806 Cec11g0787 Cco11g0793 Clacu11g1052 Cmu11g0913 Cre11g1251 . . Chy07g00665 Cme07g00873
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006012 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 38