Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g0821 ATGTGCAGGAGGACAACGAAGCGACAAGGAGGCTGCCACGATGGCAACAACAATGACGGCGTCAGAAGAAGAAGAACTATCCCATCTCCAAGAGTCCTAGAAAGGCTAGTCCTCGACGAAAGCTTGCACTTCTTCCGCCGTCGAAAAGTAAGTTGTTGTTTGCTTCTGCCAGAATCGTATCATCGGAGACGGAGGCGGCGACTGTCCTCTCTCGCTGCCAGTTTTATCACTGTCCACCTTGCGACAGCTACCGCGACTGAAGGATTAAGGAACAATATGTTCAAGAAGGCGGCAGAAGCGAAGTTACACCAGAGATTATCTGGTGCAGACAGGAAGAAGCTGAAGAGGACTGTTAAAGAAAGGTTCCCCGGAGCTTCCGATGCCGAGATTGATGTCTTGCTTCCTCCCAAGGTTGAGTTTTCTGTTGCCAAGTTCCAAAATCGCGTCCACATATATAGTCTAGAAGGAGGCTTTCCTATGTTTTTCGACGTTGATGGGAGAGGAACTGAAATATTCCCCACAGTTTTTGCACTCTGGATGGTACCAGAGTTGTTGCCTGCCTTTGTTTTGAAGGGGGGTGAAGTGTCTCGCTATGTGATAGGAGGAGCAGACTTGATGTTCCCTGGTATTCACATTCCTGCTGAAGGTCTTCCTTCATTTTTATCTGGGGAACCATGGGCTGTGAAAGTCCCTGGCAATGCATCTCCTATTGCTGTTGGTGTTACCACCATGAGTAGCACTGAAGCATTAAAAGCGGGTTTACGTGGAAAGGCTCTGAGAATTCTACACTACTACAGGGATTCCCTTTGGGGATCGGTAGAGGGTCATTATGTGCCGAATGCAGGTTTCTTGGAAGATGTTGTATATGGAGATCCTGTTTTGGCATCATCTTCACAAACCGATGACTCTTGTGAAGGTACTGAAACTGCTGCTGATGCTTCAAATTATGGACAGAATGACAGCAGCAATAAAGAAGTTGGGGGATCTGTTGATGAAACTACAAGTGATGTTCTTGATGAGCCTGGGGTTGTTCTAACAGCACAGACAGATTCAACTACTGATGATATCGTTTCTGGTGTGAATGATTTGAAGGTTGTAAATGATATTTCCACTGAGGAACCAAATGTGCAACATACTTTATCAGCTGATGATGTGGATAAGCTTCTGGATAAATGTCTTCTTCAAGCCCTGCATACAACCGTGAAAGACAAAGACTTTCCACTTCCTGGAAGCACTCTGTGGTCAAATCATGTATTGCCTTGTCGGCCTCCTGGCATGATGCTAGACATCAAGAAATCATCTTACAAGAAATTGTCAAAGTGGTTGCAAGCTAAATCCTCTACTGGACTGATTATAGTGAAAGAAGACAAGCATAAAAAAGAGACGGTTTTGTACTCTGTTAACCGTAAGCATCCAGACTACACTTCCTTTAAACCAGAGAAGCAACAGGTAGAGAAAATTGATCAGAGCGACAATCATGGTCCAAAAGAAAGTTTATCCAATAAAATACTTGAAGTAGCAGAGATATACAAGCCAAGTGTGCATGTCAATCCCATTTTTTTTGCTGTGGGGGCGGACACTAGCAAACTTTACACTGCAGCAGAGGCTACTGATATTGTCTTCCAATACATTGAGAAAGAAAAATTGGAGAAACCAACAGAAAAGTCCAGAGTGGTCTTGGACGCAATATTGTGTGATGCACTGTTCAAGGGGGCCATTAAGAAAGGAACAACATATCCAACAGAAATTCATAAAAAAGATATAGGTTCAACATTTATCAGCCGGATGCAACCTCATCATATTGTAACAAGAGGAAGTGAGTCTGTTGTTCGCAAAGGTGCATTAAAGACTATTCAAATAATGACAGAGCGACGTCAAGGAAATAAGAAAGTTACAAGACTTTCTGGGTTGGAAACGTTCTTGTTGGATGCTGAAGCATTGGCATCAGAGCTTCAGAAAAAGTGTGCTTGCAGTACGACGGTGGCCGAGTTGCCAGGTAAAAAAGGGTATGAAGTTGTGGTCCAAGGTGGAGTCATCGATGACTTGGCAAGACATCTGATTGAACAATATGGGATTCCAAAAAAGTACATTGAACTATATATTCAGAGGAAACTTACCAACCCCCGCCTGTATCATGCAAAAGAGGAAAAGCCTGAATCAAAAGATATGGTAGAAGTTACTGATGATGAGTTTCAGCCACTGCCTCCTGCCATTGTTATCGTCGTTTCGTTTGCCTTCAGCAATGAAATCGATACAGCCATTGCCGCTGTTGTGAAGACGCCTATCTGA 2289 43.73 MCRRTTKRQGGCHDGNNNDGVRRRRTIPSPRVLERLVLDESLHFFRRRKVSCCLLLPESYHRRRRRRLSSLAASFITVHLATATATEGLRNNMFKKAAEAKLHQRLSGADRKKLKRTVKERFPGASDAEIDVLLPPKVEFSVAKFQNRVHIYSLEGGFPMFFDVDGRGTEIFPTVFALWMVPELLPAFVLKGGEVSRYVIGGADLMFPGIHIPAEGLPSFLSGEPWAVKVPGNASPIAVGVTTMSSTEALKAGLRGKALRILHYYRDSLWGSVEGHYVPNAGFLEDVVYGDPVLASSSQTDDSCEGTETAADASNYGQNDSSNKEVGGSVDETTSDVLDEPGVVLTAQTDSTTDDIVSGVNDLKVVNDISTEEPNVQHTLSADDVDKLLDKCLLQALHTTVKDKDFPLPGSTLWSNHVLPCRPPGMMLDIKKSSYKKLSKWLQAKSSTGLIIVKEDKHKKETVLYSVNRKHPDYTSFKPEKQQVEKIDQSDNHGPKESLSNKILEVAEIYKPSVHVNPIFFAVGADTSKLYTAAEATDIVFQYIEKEKLEKPTEKSRVVLDAILCDALFKGAIKKGTTYPTEIHKKDIGSTFISRMQPHHIVTRGSESVVRKGALKTIQIMTERRQGNKKVTRLSGLETFLLDAEALASELQKKCACSTTVAELPGKKGYEVVVQGGVIDDLARHLIEQYGIPKKYIELYIQRKLTNPRLYHAKEEKPESKDMVEVTDDEFQPLPPAIVIVVSFAFSNEIDTAIAAVVKTPI 762
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9568431 9586321 - CcPI632755_11g008210.1 Cco11g0821 192057

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g0821 762 ProSiteProfiles Translation initiation factor SUI1 family profile. 618 690 IPR001950 GO:0003743(InterPro)|GO:0006413(InterPro)
Cco11g0821 762 MobiDBLite consensus disorder prediction 295 330 - -
Cco11g0821 762 CDD eIF2D_C 618 698 IPR039759 -
Cco11g0821 762 MobiDBLite consensus disorder prediction 1 26 - -
Cco11g0821 762 SUPERFAMILY eIF1-like 583 699 IPR036877 GO:0003743(InterPro)|GO:0006413(InterPro)
Cco11g0821 762 SUPERFAMILY SWIB/MDM2 domain 502 600 IPR036885 -
Cco11g0821 762 Gene3D - 91 277 - -
Cco11g0821 762 ProSiteProfiles PUA domain profile. 185 266 - -
Cco11g0821 762 Gene3D - 614 700 - -
Cco11g0821 762 MobiDBLite consensus disorder prediction 295 340 - -
Cco11g0821 762 Pfam Translation initiation factor SUI1 616 693 IPR001950 GO:0003743(InterPro)|GO:0006413(InterPro)
Cco11g0821 762 Pfam Pre-PUA-like domain 94 182 IPR041366 -
Cco11g0821 762 CDD eIF2D_N 101 173 IPR048247 -
Cco11g0821 762 CDD PUA_eIF2d-like 184 266 IPR048248 -
Cco11g0821 762 SUPERFAMILY PUA domain-like 195 271 IPR015947 -
Cco11g0821 762 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2D 93 700 IPR039757 GO:0001731(PANTHER)|GO:0001731(InterPro)|GO:0003743(InterPro)|GO:0003743(PANTHER)
Cco11g0821 762 FunFam eukaryotic translation initiation factor 2D 615 699 - -
Cco11g0821 762 FunFam Eukaryotic translation initiation factor 2D isoform A 93 277 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g0821 K15027 - - csv:101219792 1125.15
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1717 . Blo12g00811 . . . . . . . . . . . . . . . Bhi04g02549 Tan11g0045 . . Hepe02g3467 . Lcy10g2359 . . . . . . . Cone4ag1153 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla11g00797 Cam11g0833 Cec11g0819 Cco11g0821 Clacu11g1027 Cmu11g0888 Cre11g1275 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008392 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 4 1 34