Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g0824 ATGCAACGGTCACGTAGAGCTCTTCTTCAGAGAAGGGCTTTAGAGAAAACTACAAGTGGGAGGAATCGCTTGTATATGTTCTTTCTGTCCTTAGTATTTGTATTGTGGGGGCTATTCTTCCTCTTTAGCCCGTGGATCAGACAGGGCAACAGTCGTAGAGATGGCTGCACTGATCTACAAGATAGCATATCAACTTGGAATGAATCCAAGTATGGAAATTACAAGCATTCTGAAATAATTACTGAAAGCCGTCAGAATAAAAATTGTTCAGCTGCCCCTTTAAAGGAACGGTTCATAGACAGTGCAAAATCCAGAGCCTTTGACGATGTTATCTTTGCTCCTGAAGAAAATGTAAATCATGATAATTTTGATGAGAATGTACGTTTGCTTGCTCTTGGAGAGCAGCCTGATGTGAAGAAAGATGGTTTAGGAGGGAATTTTCAAACTGATACTTTAAAAGCTGATCGCCTATCTGATGTTTTACCCCTTGGTCTTGAAGTTTTCAAAAGCAGAGCATTTATCTCAAAAACCAAAATCAGACCTGGCCAATTGGAAAGTACTTTACATAGGTTAGAGCCTAGCGGTGCAGAATACAATTATGCAGCAGCTTCAAAGGGGTCAAAGGTATTGGGATTTAACAAGGAAGCCAAGGGAGCCTCAAATATATTAGAAAGGGACACGGACAAGTACCTCAGAAATCCATGTTCTGCTGAGGAAAAATTTGTTACCTTGGAACTTTCTGAAGAAACATTAGTGCGTACAATTAAAATTGCTAATTTTGAGCACCACTCTTCCAATTTGAAGGAATTTGAGCTTCTTGGAAGTTCGGTTTATCCTACTGATGTTTGGGTAAAGCTTGGGAACTTTACTGCTGCAAATGCAAAGCATGCTCAAAGGTTTGTCCTTGAGGAGCCAAAATGGGTGAGGTACTTGAAATTAAGACTTTTAGGTCATCATGGTTCAGAATTCTACTGCACACTAAGTGTCTTTGAAGTTTATGGACTAGATGCGGTCGAGGAAATGCTGGAGGATTTGGTTTCAGCTCATGACAATACCTTTATATCAACAGGACTTTCTGTGGACAATGAACCAATGACAAAGTACGACAACGAGCATCATAACTACGATGGAGAAATATCCTCTTTAAGGGATGACGCTGATATTGTACAGGATTTTGTTAAACAAGACTTACCGGATAGGTTTCAAGAACTTCGCCATCATCAAGCAGGCAGGATGCCTGGGGACACTGTTCTCAAGATACTAATGCAGAAAGTTCGCTCATCTGATTTAAACTTATCTATCCTGGAGCACTATTTGGAAGAACTACATTCCAAATATGGAAATATTTTCAGACAGTTCAATGATGACATTCGAGAGAACGACATACTCCTAGAGAAGAGTCGTGAAGACATAAGGAATCTCCTCAGAATCCAGGAGAGCCTTAGTAAAGATGTTAGTGATCTCATTTCTTGGAGGTCCTTTATTTCTCTCCAGTTGGATAATCTACTCAGAGACAATGCAATTCTCAGATCTGAGATTGAGAAGGTTAGGGAGAAACAGAGTTCTCAAGAGAACCAAGGCGCTACGGTGGTATTTGTATGTATGGTTTTTTTATTATTTGGTCTGATTAGGCTGTTCATAGATATGGTGGTTAGTGTTTATAGAGTAACAAGTATGGAAAGGAAGAGTAAATCTGGGAAATTTTGTATGGCTTCTTCCTGGATTTTGTTGCTACTGAGTTGTAGCATCTTCATTTTCATACTTTTGTAG 1770 39.55 MQRSRRALLQRRALEKTTSGRNRLYMFFLSLVFVLWGLFFLFSPWIRQGNSRRDGCTDLQDSISTWNESKYGNYKHSEIITESRQNKNCSAAPLKERFIDSAKSRAFDDVIFAPEENVNHDNFDENVRLLALGEQPDVKKDGLGGNFQTDTLKADRLSDVLPLGLEVFKSRAFISKTKIRPGQLESTLHRLEPSGAEYNYAAASKGSKVLGFNKEAKGASNILERDTDKYLRNPCSAEEKFVTLELSEETLVRTIKIANFEHHSSNLKEFELLGSSVYPTDVWVKLGNFTAANAKHAQRFVLEEPKWVRYLKLRLLGHHGSEFYCTLSVFEVYGLDAVEEMLEDLVSAHDNTFISTGLSVDNEPMTKYDNEHHNYDGEISSLRDDADIVQDFVKQDLPDRFQELRHHQAGRMPGDTVLKILMQKVRSSDLNLSILEHYLEELHSKYGNIFRQFNDDIRENDILLEKSREDIRNLLRIQESLSKDVSDLISWRSFISLQLDNLLRDNAILRSEIEKVREKQSSQENQGATVVFVCMVFLLFGLIRLFIDMVVSVYRVTSMERKSKSGKFCMASSWILLLLSCSIFIFILL 589
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9644591 9647325 - CcPI632755_11g008240.1 Cco11g0824 192060

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g0824 589 Coils Coil 464 484 - -
Cco11g0824 589 ProSiteProfiles SUN domain profile. 171 337 IPR012919 -
Cco11g0824 589 Pfam Sad1 / UNC-like C-terminal 213 334 IPR012919 -
Cco11g0824 589 SUPERFAMILY Galactose-binding domain-like 218 333 IPR008979 -
Cco11g0824 589 FunFam Galactose-binding protein isoform 3 202 345 - -
Cco11g0824 589 Coils Coil 499 526 - -
Cco11g0824 589 Gene3D - 213 345 - -
Cco11g0824 589 PANTHER MEMBRANE PROTEIN CH1 RELATED 27 582 IPR045120 GO:0005737(PANTHER)|GO:0016020(PANTHER)|GO:0016020(InterPro)|GO:0034975(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g0824 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0176 Cco-Chr1:1677157 Cco11g0824 Cco-Chr11:9644591 1.20E-92 dispersed
Cco08g0212 Cco-Chr8:3518005 Cco11g0824 Cco-Chr11:9644591 8.60E-133 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1715 Blo01g01681 Blo12g00813 . Bda03g00359 . Bpe04g00319 Bma04g00336 . . . Cma01g00876 Cma09g01292 Car01g00801 . . Cpe06g00977 . Bhi04g02551 . . . . . . Cla08g00151 Cam08g0147 Cec08g0104 Cco08g0212 . Cmu08g0148 Cre08g0131 Cone4ag1155 . . . . . . Cme09g00106 . . Bda11g00923 . . . . . Sed01g3805 Cmo01g00919 Cmo09g01250 . . . Car09g01108 . Cpe02g00987 Bhi06g00145 Tan10g1859 Cmetu09g0015 . . . . Cla11g00801 Cam11g0837 Cec11g0822 Cco11g0824 Clacu11g1021 Cmu11g0883 Cre11g1281 Lsi08g00153 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004020 3 6 3 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 0 4 1 44