Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g0870 ATGTCTACACTCGAAATCGAAGCTAGGGATGTCATCAAGATCGTGCTTCAGTTTTGTAAAGAAAATTCATTGCACCAGACGTTCCAGACGTTACAGAATGAGTGTCAGGTTTCTTTGAATACCGTAGACAGCATTGAAACTTTTGTTGCTGATATAAACTCTGGACGGTGGGATGCTATATTGCCTCAAGTGTCTCAACTTAAGCTTCCAAGAAATAAATTGGAGGACTTGTATGAACAGATTGTATTAGAAATGATTGAGCTTCGTGAATTGGATACTGCTCGTGCTATTCTAAGGCAAACTCAAGTGATGGGTGTCATGAAGCAGGAACAACCTGAAAGATACCTGCGACTTGAGCATCTATTAGTCCGAACATACTTTGATCCAAACGAGGCTTATCAAGATTCAACAAAGGAGAAACGCCGAGCACAAATTGCACAAGCCCTTGCAGCTGAAGTTACCGTGGTTGCACCTTCTCGTTTAATGGCTCTAATTGGCCAGGCTCTAAAATGGCAGCAACACCAAGGTTTACTTCCTCCAGGAACGCAGTTTGACTTATTTCGTGGAACTGCTGCTATGAAACAAGATGTGGAGGATGTTTATCCAACAACCCTTTCTCACACAATAAAGTTCGGTACAAAAAGTCATGCAGAATGTGCTCGGTTCTCACCAGATGGGCAGTTTCTTGTTTCTTGCTCCGTGGATGGATTCATTGAGGTCTGGGATTATATAAGTGGGAAACTCAAGAAGGATCTTCAGTACCAGGCTGATGAAACTTTTATGATGCATGATGATCCGGTCCTTTGTGTTGATTTTAGTAGAGACTCAGAGATGATTGCTTCTGGTTCACAAGATGGAAAAATTAAAGTATGGCGTATAAGGACTGGCCAATGCTTGCGGCGTCTTGAACGTGCTCATTCTCAGGGAGTTACGAGTGTTGTTTTCTCACGTGACGGAACCCAGTTGCTGAGTACATCTTTTGACACCACAGCAAGAATCCATGGTCTAAAATCTGGGAAGCTATTGAAGGAATTCCGTGGACATTCATCATATGTGAATGATGCAGTCTTTACTAATGATGGAGCACGGGTCATTACTGCATCTAGTGATTGCACGGTCAAGGTTTGGGATGTGAAGACAACTGATTGTCTGCATACATTCAAGCCACCGCCTCCATTAAGGGGAGGAGATGCCTCGGTGAATTCAGTTCATATCTTCCCCAAAAATGCAGATCATATTGTTGTTTGTAACAAGACATCGTCAATATACATCATGACATTGCAAGGGCAGGTTGTTAAGAGCTTCTCATCTGGTAAAAGAGAAGGGGGAGATTTTGTTGCAGCTTGCGTATCACCAAAAGGTGAATGGATATACTGCATTGGTGAAGACAGGAATATGTATTGCTTCAGCCACCAATCTGGTAAGCTGGAGCATCTCATGAAGGTTCATGAGAAGGACGTGATAGGAGGTGGAAACAGTCCATTCAGAGATGGCGACGGAAGCGGCGGGAGACGGGTGGAGATGGTACCGGCTATGTTTGTATTCGGAGACTCTCTCATTGACAATGGAAATAACAATAATCTTCCCTCTTTTGCCAAGGCCAACTATTTCCCCTATGGCATTGATTTCAATGGCGGCCCAACTGGCCGCTTCTCCAATGGCTACACCATGGTCGATGAAATAGCGGAGCTGCTAGGACTCCCATTAATCCCAGCCTTCTCTCAAGTTTCTGGAGCCCAATCTCTGCATGGAGTCAACTATGCGTCTGCTGCAGCCGGCATTCTTGACGCTACGGGGAGAAACTTTGTGAGTCGCATACCTTTCAATCAACAAATCAGAAACTTCGAGAACACGCTGGATGAGATTAGTAACAATGTAGGGGCAGGGAAGGTGGGAGAATCCATCGGAAGGTGCATATTCTTTGTGGGAATGGGAAGCAACGACTACCTCAATAACTATCTTATGCCAAATTACCCCACTCGAAATCAGTACAATGCTCAACAGTACGCGGACTTGTTGGTCAGCCAATATACGCAGCAGCTCACTAGGCTGTACAATCTAGGAGGTAGAAGGTTTGCTATAGCAGGTTTAGGGCTGATGGGTTGCATTCCAAGCATCCTAGCACAGAGCCCATCAGGAAGGTGCTCAGAAGAAGTGAACCAACTTGTTGGACCATTCAATATAAATGTGAAGAGAATGATAAAGCAGCTGAATACCAATCTTCCAGGAGCAAGATATAGTTACATTGACATAGAACACATGTTCCAAGACTTGCTTCTCAATTCTAGATTTTATGGTTTAAGTGTTTTGAATAGAGGATGCTGTGGAATTGGGAGGAACAGAGGCCAAATCACTTGCCTTCCCTTCCAAACTCCTTGTAGTAATCGAGATGAGTACATCTTTTGGGATGCATTCCATCCTACTGAAGCAGTTAACATTATCATGGCTAGGAAGGCTTTTAATGGTGACCAATCTGTTATTTTCCCTTTCAATATCCAACAGCTAGCTACTACTCTTTGA 2520 43.81 MSTLEIEARDVIKIVLQFCKENSLHQTFQTLQNECQVSLNTVDSIETFVADINSGRWDAILPQVSQLKLPRNKLEDLYEQIVLEMIELRELDTARAILRQTQVMGVMKQEQPERYLRLEHLLVRTYFDPNEAYQDSTKEKRRAQIAQALAAEVTVVAPSRLMALIGQALKWQQHQGLLPPGTQFDLFRGTAAMKQDVEDVYPTTLSHTIKFGTKSHAECARFSPDGQFLVSCSVDGFIEVWDYISGKLKKDLQYQADETFMMHDDPVLCVDFSRDSEMIASGSQDGKIKVWRIRTGQCLRRLERAHSQGVTSVVFSRDGTQLLSTSFDTTARIHGLKSGKLLKEFRGHSSYVNDAVFTNDGARVITASSDCTVKVWDVKTTDCLHTFKPPPPLRGGDASVNSVHIFPKNADHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCIGEDRNMYCFSHQSGKLEHLMKVHEKDVIGGGNSPFRDGDGSGGRRVEMVPAMFVFGDSLIDNGNNNNLPSFAKANYFPYGIDFNGGPTGRFSNGYTMVDEIAELLGLPLIPAFSQVSGAQSLHGVNYASAAAGILDATGRNFVSRIPFNQQIRNFENTLDEISNNVGAGKVGESIGRCIFFVGMGSNDYLNNYLMPNYPTRNQYNAQQYADLLVSQYTQQLTRLYNLGGRRFAIAGLGLMGCIPSILAQSPSGRCSEEVNQLVGPFNINVKRMIKQLNTNLPGARYSYIDIEHMFQDLLLNSRFYGLSVLNRGCCGIGRNRGQITCLPFQTPCSNRDEYIFWDAFHPTEAVNIIMARKAFNGDQSVIFPFNIQQLATTL 839
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 10942642 10961433 + CcPI632755_11g008700.1 Cco11g0870 192106

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g0870 839 Gene3D - 190 497 IPR015943 GO:0005515(InterPro)
Cco11g0870 839 ProSiteProfiles Trp-Asp (WD) repeats profile. 345 386 IPR001680 GO:0005515(InterPro)
Cco11g0870 839 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 41 93 IPR006595 -
Cco11g0870 839 CDD SGNH_plant_lipase_like 510 823 IPR035669 -
Cco11g0870 839 CDD WD40 219 487 - -
Cco11g0870 839 Pfam WD domain, G-beta repeat 259 291 IPR001680 GO:0005515(InterPro)
Cco11g0870 839 Pfam WD domain, G-beta repeat 217 242 IPR001680 GO:0005515(InterPro)
Cco11g0870 839 Pfam WD domain, G-beta repeat 296 333 IPR001680 GO:0005515(InterPro)
Cco11g0870 839 Pfam WD domain, G-beta repeat 339 377 IPR001680 GO:0005515(InterPro)
Cco11g0870 839 ProSiteProfiles Trp-Asp (WD) repeats profile. 222 251 IPR001680 GO:0005515(InterPro)
Cco11g0870 839 ProSitePatterns Trp-Asp (WD) repeats signature. 364 378 IPR019775 -
Cco11g0870 839 Coils Coil 71 91 - -
Cco11g0870 839 PANTHER WD40 REPEAT PROTEIN 3 490 IPR045184 GO:0000398(InterPro)|GO:0008380(PANTHER)|GO:0071011(PANTHER)
Cco11g0870 839 ProSiteProfiles Trp-Asp (WD) repeats profile. 260 301 IPR001680 GO:0005515(InterPro)
Cco11g0870 839 SMART Lish 7 39 IPR006594 GO:0005515(InterPro)
Cco11g0870 839 Pfam GDSL-like Lipase/Acylhydrolase 513 817 IPR001087 GO:0016788(InterPro)
Cco11g0870 839 ProSiteProfiles Trp-Asp (WD) repeats profile. 303 344 IPR001680 GO:0005515(InterPro)
Cco11g0870 839 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 260 297 - -
Cco11g0870 839 FunFam SMU1, DNA replication regulator and spliceosomal factor 191 498 - -
Cco11g0870 839 SMART WD40_4 253 292 IPR001680 GO:0005515(InterPro)
Cco11g0870 839 SMART WD40_4 428 470 IPR001680 GO:0005515(InterPro)
Cco11g0870 839 SMART WD40_4 202 242 IPR001680 GO:0005515(InterPro)
Cco11g0870 839 SMART WD40_4 380 426 IPR001680 GO:0005515(InterPro)
Cco11g0870 839 SMART WD40_4 295 335 IPR001680 GO:0005515(InterPro)
Cco11g0870 839 SMART WD40_4 338 377 IPR001680 GO:0005515(InterPro)
Cco11g0870 839 ProSiteProfiles LIS1 homology (LisH) motif profile. 7 39 IPR006594 GO:0005515(InterPro)
Cco11g0870 839 PRINTS G protein beta WD-40 repeat signature 229 243 IPR020472 -
Cco11g0870 839 PRINTS G protein beta WD-40 repeat signature 364 378 IPR020472 -
Cco11g0870 839 PRINTS G protein beta WD-40 repeat signature 279 293 IPR020472 -
Cco11g0870 839 Pfam LisH-like dimerisation domain 7 37 IPR054532 -
Cco11g0870 839 SUPERFAMILY WD40 repeat-like 208 489 IPR036322 GO:0005515(InterPro)
Cco11g0870 839 SMART ctlh 41 93 IPR006595 -
Cco11g0870 839 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 345 380 - -
Cco11g0870 839 Gene3D SGNH hydrolase 505 824 IPR036514 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g0870 K13111 - - csv:101203464 988.408
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g1817 Cco-Chr6:28514935 Cco11g0870 Cco-Chr11:10942642 2.20E-60 dispersed
Cco07g1233 Cco-Chr7:26220086 Cco11g0870 Cco-Chr11:10942642 1.30E-63 dispersed
Cco08g0111 Cco-Chr8:1845576 Cco11g0870 Cco-Chr11:10942642 2.90E-150 dispersed
Cco08g0113 Cco-Chr8:1858850 Cco11g0870 Cco-Chr11:10942642 4.20E-91 dispersed
Cco10g0486 Cco-Chr10:5785674 Cco11g0870 Cco-Chr11:10942642 7.50E-58 dispersed
Cco11g0870 Cco-Chr11:10942642 Cco11g0937 Cco-Chr11:14488039 5.70E-61 dispersed
Cco11g0870 Cco-Chr11:10942642 Cco03g0721 Cco-Chr3:7404989 1.70E-97 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1661 . . . . . . . Bma01g02439 . . . . Car01g00778 . . . . . . . . . . . . . . . . . . . . . . . . . Cme09g00039 . . . . . . . . . . . . . . . . Cpe02g01018 . . . . . . . Cla11g00844 Cam11g0875 Cec11g0875 Cco11g0870 Clacu11g0987 Cmu11g0838 Cre11g1319 Lsi08g00048 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005835 1 1 1 1 1 1 2 1 1 1 1 1 2 0 1 2 1 2 3 1 1 1 1 1 1 1 1 2 4 1 39