Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g0893 ATGGGGCTATTGATAAGTTGCTCTTGGTTCTACATCGGCTTCAAGAGATGGAAGCTCATAAAACTCAGAGAATATTTCTTCCGACAAAATGGAGGATTAATGTTTGAGCAACAACTTTCCATCCGAGACGACGCCGCACAAACCGCTAAACTTTTCACAGCTGAGGAATTACGGAAAGCCACTAACAACTACTCTGACGACCGAATCGTCGGCAAAGGCGGCTTCGGAACAGTCTACAAAGGCATCCTTCCTACCGGCGCCGCCGTCGCCATCAAGAAATCCAAGATCGTCGATAAAACTCAGAACAAACAGTTCATCAACGAAGTCATTGTCCTCTCACAGATCAATCATCGAAACACAGTCAAACTCCTAGGCTGTTGCTTGGAAGAAGAAGTTCCTCTTCTCGTCTACGAATTCGTCTCCAATGGCACGCTCTTCGATCACATTCACAAGAGAAAATCACAGCGCTCTATTCCTTGGAAGATCCGCCTCAAAATCGCATCCGAAACCGCCGGAGTCCTCTCCTATCTTCACTCCTCCGCCACTATTCCGATCATTCACAGAGATGTCAAATCCACAAACATTCTCCTCGACGAAAATTTCACTGCGAAGGTTTCCGATTTTGGTGCTTCCAAACTAGTTCCTTTAGATCAGGTCGATTTGAACACGATCGTGCAAGGAACTCTGGGATACCTAGATCCAGAGTATTTGCAAACTAGTCAATTGACAGAGAAGAGTGACGTGTACAGTTTCGGAGTTGTTTTGGTCGAATTGATGACCGGAAAAGCTCCTCTGTCCTTCAGCCGATCGGAGGAAGAACGGAATCTATCAATGCATTTTCTAATCGCTCTGAAACAGAATCGACTTGGAGAAATTGTGGATAGAAGTTTAGGCGGCGATGTGGATGTGGAGCAACTGAAGGAAGTTGCGAACCTTGCGAAGAGGTGTTTGAGAGTGAAGGGAGAAGAAAGGCCGACGATGAAGGAGGTTGCTGCAGAGCTTGAAGGATTATGTCAAATGGCGTTCGGTCATCCATGGAATGTTGATAAATCTTCGTCTGTTGAAGGAGGAGAGCTTTTGGTTAATGAAGAAGATAAAAATGAAGTTCCATTTGATAGTTTGCTTTTCCCCATCAACCAAATGATACCAAACGCACGTTCTGCCAGGTAA 1170 45.3 MGLLISCSWFYIGFKRWKLIKLREYFFRQNGGLMFEQQLSIRDDAAQTAKLFTAEELRKATNNYSDDRIVGKGGFGTVYKGILPTGAAVAIKKSKIVDKTQNKQFINEVIVLSQINHRNTVKLLGCCLEEEVPLLVYEFVSNGTLFDHIHKRKSQRSIPWKIRLKIASETAGVLSYLHSSATIPIIHRDVKSTNILLDENFTAKVSDFGASKLVPLDQVDLNTIVQGTLGYLDPEYLQTSQLTEKSDVYSFGVVLVELMTGKAPLSFSRSEEERNLSMHFLIALKQNRLGEIVDRSLGGDVDVEQLKEVANLAKRCLRVKGEERPTMKEVAAELEGLCQMAFGHPWNVDKSSSVEGGELLVNEEDKNEVPFDSLLFPINQMIPNARSAR 389
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 11755436 11756605 - CcPI632755_11g008930.1 Cco11g0893 192129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g0893 389 SMART serkin_6 64 342 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco11g0893 389 Gene3D Phosphorylase Kinase; domain 1 33 139 - -
Cco11g0893 389 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 4 338 IPR045274 GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)|GO:0007166(PANTHER)|GO:0007166(InterPro)
Cco11g0893 389 Gene3D Transferase(Phosphotransferase) domain 1 140 345 - -
Cco11g0893 389 FunFam Wall-associated receptor kinase 2 34 139 - -
Cco11g0893 389 SUPERFAMILY Protein kinase-like (PK-like) 48 336 IPR011009 -
Cco11g0893 389 ProSitePatterns Serine/Threonine protein kinases active-site signature. 185 197 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco11g0893 389 ProSiteProfiles Protein kinase domain profile. 64 347 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco11g0893 389 CDD STKc_IRAK 70 337 - -
Cco11g0893 389 Pfam Protein kinase domain 64 331 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco11g0893 389 FunFam Wall-associated receptor kinase 2 140 356 - -
Cco11g0893 389 ProSitePatterns Protein kinases ATP-binding region signature. 70 93 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g0761 Cco-Chr8:19428467 Cco11g0893 Cco-Chr11:11755436 1.00E-109 dispersed
Cco11g0678 Cco-Chr11:7388175 Cco11g0893 Cco-Chr11:11755436 7.20E-77 dispersed
Cco11g0893 Cco-Chr11:11755436 Cco11g1970 Cco-Chr11:32175938 1.40E-118 dispersed
Cco11g0893 Cco-Chr11:11755436 Cco10g1945 Cco-Chr10:33008027 2.10E-79 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87238 PF00069 Pkinase 1.80E-51 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g0893 - - - 0.0