Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco11g0916 | ATGGGTTCAATCAATTGGCTTGGCTTCTCTCTCTCCCCTCAACACCAACCCTCCGACCACCCTCCCGCCGCCGCCCCCTTCACCTCCGACCAAATCTCCCCCTCCGACGTCTCCGCCGTCTGCTTTGACAACCTTCCTTCTTCATATGGTGTTTATGAACCCTTCAACCGCAATAATCACTCTCAAGATTGGAATAGTATGAAGGGTTTAGGGTCGACTCAAAGTTCGGATTTTTCTGCTTTAATCGAAACCCAACACCAACCAAAGCTTGAAAATTTCCTCGGTCACCACTCTTTCACCGACCACGACCACGCCGCCGCCGTCTACACCAATGCATCCGCCAACTACATGTTCCAAAATTGTTCTTTGGAGCTTCCATCTGAGGCTGGCGGCGGCGACGACGGCGGTGGAAGACCCAACGCCGGTAACGGAAACACCAACAACACTAGCTCTATTGGGTTATCTATGATTAAGACATGGCTAAGAAATCAACCGGCGCCGCCGCAAGCGGTGACCAAGAGTGGCGGAGATCACGACGGTGTAGTTGGAATAGGTAATAATATTACAAGCGCACATACTTTATCACTGTCGATGAACACTGGTCCCCCACCGCAGTCGCAGTCCTCCGGCTCGGCGGCTCTACCACTTCTCACGGCCAACGGCGGCGAAAGCTCTTCCTCCGATAACAAACAAGGCAAATCTTCCGCTGCCGAGCTGGACACTGAAAACGGCGCCGTTGAAGCTGTTCCTAGAAAATCTGTCGATACATTCGGACAAAGAACTTCCATCTACCGCGGAGTAACCAGGCATAGATGGACAGGAAGATATGAAGCTCATCTCTGGGACAATAGTTGCAGAAGAGAAGGACAGACTAGAAAAGGAAGACAAGTCTATTTGGGAGGTTATGACAAAGAAGAAAAGGCTGCTAGAGCTTACGATTTAGCGGCACTGAAATACTGGGGTACCACAACCACAACAAACTTTCCAATTAGTGATTACGAAAAAGAGTTGGAAGACATGAAGCACATGACTCGGCAAGAGTTTGTTGCGTCTCTAAGAAGGAAGAGTAGTGGGTTTTCTCGAGGAGCTTCAATTTACCGCGGAGTTACAAGACACCACCAGCATGGGAGATGGCAAGCAAGAATAGGGAGAGTTGCGGGGAATAAAGACCTCTACTTGGGAACTTTCAGTACACAAGAGGAAGCAGCCGAAGCATATGATATAGCGGCTATAAAGTTTAGGGGACTAAACGCAGTGACAAACTTTGACATGAGCCGTTACGATGTAAAAGCCATTCTTGAAAGCAACACATTACCTATCGGCGGCGCAGCCAAGCGCTTAAAAGACATCGACCACTCCGACATCCCTCTGGACCCCCAACGAACAGACGACACCATAACGTCACACCTCTCTGATGGAATAATAACCACCACCACTGCTCCCTACAGCGGTGGTGGATGGCCCACTCTCGCCTTCCACCACCATCCCTACGCCTTTCACTACCCGTATGCTACCCCACAACAACGGTTGTGGTGCAAGCAAGAACATGACACTACTGCCATCGCCGCCGACAACTTCTTCCCACATGGTGGGGCTATGGACTCGATGGACCACAGCTCGGGGTCGAGCTCCGTGGTTTACAGCAGTGGTAACGGAGATGGGTACAGCGGGAACTTCTTGATCCCAATGGGAGCGGGAGGGGCGGAAGGGAGCAGCAGCAACAACAACAATAGTGGATTGGGAGACATGGGAGAAGTGAATTTATTTGGTAGTTGTTCTAACGTGGATGATTCATACAATGCAACAAGAACGACCAATTTGTATAATTATCATAACCCCTCTCATCAGCTGCAACCACCGCCGCTGTCGTCGGGGTTGCAAGGTTCTAGCTGCAACAACTGGCTTCCTCCGGCAAGGTCAGTTTGTCACGGGGGAGCTCCGCCGCCTTTCACCATTTGGAATGACACTTAG | 1971 | 50.68 | MGSINWLGFSLSPQHQPSDHPPAAAPFTSDQISPSDVSAVCFDNLPSSYGVYEPFNRNNHSQDWNSMKGLGSTQSSDFSALIETQHQPKLENFLGHHSFTDHDHAAAVYTNASANYMFQNCSLELPSEAGGGDDGGGRPNAGNGNTNNTSSIGLSMIKTWLRNQPAPPQAVTKSGGDHDGVVGIGNNITSAHTLSLSMNTGPPPQSQSSGSAALPLLTANGGESSSSDNKQGKSSAAELDTENGAVEAVPRKSVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQTRKGRQVYLGGYDKEEKAARAYDLAALKYWGTTTTTNFPISDYEKELEDMKHMTRQEFVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKAILESNTLPIGGAAKRLKDIDHSDIPLDPQRTDDTITSHLSDGIITTTTAPYSGGGWPTLAFHHHPYAFHYPYATPQQRLWCKQEHDTTAIAADNFFPHGGAMDSMDHSSGSSSVVYSSGNGDGYSGNFLIPMGAGGAEGSSSNNNNSGLGDMGEVNLFGSCSNVDDSYNATRTTNLYNYHNPSHQLQPPPLSSGLQGSSCNNWLPPARSVCHGGAPPPFTIWNDT | 656 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 13224340 | 13228508 | + | CcPI632755_11g009160.1 | Cco11g0916 | 192152 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco11g0916 | 656 | MobiDBLite | consensus disorder prediction | 186 | 238 | - | - | |
Cco11g0916 | 656 | FunFam | AP2-like ethylene-responsive transcription factor ANT | 262 | 331 | - | - | |
Cco11g0916 | 656 | Gene3D | AP2/ERF domain | 365 | 425 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco11g0916 | 656 | Gene3D | AP2/ERF domain | 263 | 331 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco11g0916 | 656 | MobiDBLite | consensus disorder prediction | 165 | 253 | - | - | |
Cco11g0916 | 656 | PRINTS | Ethylene responsive element binding protein signature | 264 | 275 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco11g0916 | 656 | PRINTS | Ethylene responsive element binding protein signature | 405 | 425 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco11g0916 | 656 | ProSiteProfiles | AP2/ERF domain profile. | 365 | 423 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco11g0916 | 656 | SMART | rav1_2 | 365 | 429 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco11g0916 | 656 | SMART | rav1_2 | 263 | 335 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco11g0916 | 656 | MobiDBLite | consensus disorder prediction | 10 | 29 | - | - | |
Cco11g0916 | 656 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 205 | 458 | - | - | |
Cco11g0916 | 656 | MobiDBLite | consensus disorder prediction | 128 | 151 | - | - | |
Cco11g0916 | 656 | FunFam | AP2-like ethylene-responsive transcription factor | 364 | 425 | - | - | |
Cco11g0916 | 656 | Pfam | AP2 domain | 264 | 321 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco11g0916 | 656 | Pfam | AP2 domain | 366 | 415 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco11g0916 | 656 | CDD | AP2 | 262 | 331 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco11g0916 | 656 | SUPERFAMILY | DNA-binding domain | 364 | 425 | IPR016177 | GO:0003677(InterPro) | |
Cco11g0916 | 656 | ProSiteProfiles | AP2/ERF domain profile. | 263 | 329 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco11g0916 | 656 | CDD | AP2 | 364 | 425 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco11g0916 | 656 | SUPERFAMILY | DNA-binding domain | 262 | 331 | IPR016177 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco02g2489 | Cco-Chr2:37230020 | Cco11g0916 | Cco-Chr11:13224340 | 1.50E-103 | dispersed | |
Cco06g1537 | Cco-Chr6:25868736 | Cco11g0916 | Cco-Chr11:13224340 | 1.50E-101 | dispersed | |
Cco07g1482 | Cco-Chr7:28971771 | Cco11g0916 | Cco-Chr11:13224340 | 6.40E-98 | dispersed | |
Cco10g0737 | Cco-Chr10:10917055 | Cco11g0916 | Cco-Chr11:13224340 | 1.10E-99 | dispersed | |
Cco10g1476 | Cco-Chr10:27846823 | Cco11g0916 | Cco-Chr11:13224340 | 1.50E-64 | dispersed | |
Cco10g1567 | Cco-Chr10:28876204 | Cco11g0916 | Cco-Chr11:13224340 | 7.50E-45 | dispersed | |
Cco10g2053 | Cco-Chr10:33922839 | Cco11g0916 | Cco-Chr11:13224340 | 1.30E-42 | dispersed | |
Cco11g0916 | Cco-Chr11:13224340 | Cco05g1164 | Cco-Chr5:10746004 | 7.50E-08 | dispersed | |
Cco11g0916 | Cco-Chr11:13224340 | Cco08g1852 | Cco-Chr8:29537290 | 2.50E-96 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
60264 | PF00847 | AP2 | 1.50E-12 | CL0081 | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco11g0916 | K09285 | - | csv:101219473 | 1069.3 |