Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g0916 ATGGGTTCAATCAATTGGCTTGGCTTCTCTCTCTCCCCTCAACACCAACCCTCCGACCACCCTCCCGCCGCCGCCCCCTTCACCTCCGACCAAATCTCCCCCTCCGACGTCTCCGCCGTCTGCTTTGACAACCTTCCTTCTTCATATGGTGTTTATGAACCCTTCAACCGCAATAATCACTCTCAAGATTGGAATAGTATGAAGGGTTTAGGGTCGACTCAAAGTTCGGATTTTTCTGCTTTAATCGAAACCCAACACCAACCAAAGCTTGAAAATTTCCTCGGTCACCACTCTTTCACCGACCACGACCACGCCGCCGCCGTCTACACCAATGCATCCGCCAACTACATGTTCCAAAATTGTTCTTTGGAGCTTCCATCTGAGGCTGGCGGCGGCGACGACGGCGGTGGAAGACCCAACGCCGGTAACGGAAACACCAACAACACTAGCTCTATTGGGTTATCTATGATTAAGACATGGCTAAGAAATCAACCGGCGCCGCCGCAAGCGGTGACCAAGAGTGGCGGAGATCACGACGGTGTAGTTGGAATAGGTAATAATATTACAAGCGCACATACTTTATCACTGTCGATGAACACTGGTCCCCCACCGCAGTCGCAGTCCTCCGGCTCGGCGGCTCTACCACTTCTCACGGCCAACGGCGGCGAAAGCTCTTCCTCCGATAACAAACAAGGCAAATCTTCCGCTGCCGAGCTGGACACTGAAAACGGCGCCGTTGAAGCTGTTCCTAGAAAATCTGTCGATACATTCGGACAAAGAACTTCCATCTACCGCGGAGTAACCAGGCATAGATGGACAGGAAGATATGAAGCTCATCTCTGGGACAATAGTTGCAGAAGAGAAGGACAGACTAGAAAAGGAAGACAAGTCTATTTGGGAGGTTATGACAAAGAAGAAAAGGCTGCTAGAGCTTACGATTTAGCGGCACTGAAATACTGGGGTACCACAACCACAACAAACTTTCCAATTAGTGATTACGAAAAAGAGTTGGAAGACATGAAGCACATGACTCGGCAAGAGTTTGTTGCGTCTCTAAGAAGGAAGAGTAGTGGGTTTTCTCGAGGAGCTTCAATTTACCGCGGAGTTACAAGACACCACCAGCATGGGAGATGGCAAGCAAGAATAGGGAGAGTTGCGGGGAATAAAGACCTCTACTTGGGAACTTTCAGTACACAAGAGGAAGCAGCCGAAGCATATGATATAGCGGCTATAAAGTTTAGGGGACTAAACGCAGTGACAAACTTTGACATGAGCCGTTACGATGTAAAAGCCATTCTTGAAAGCAACACATTACCTATCGGCGGCGCAGCCAAGCGCTTAAAAGACATCGACCACTCCGACATCCCTCTGGACCCCCAACGAACAGACGACACCATAACGTCACACCTCTCTGATGGAATAATAACCACCACCACTGCTCCCTACAGCGGTGGTGGATGGCCCACTCTCGCCTTCCACCACCATCCCTACGCCTTTCACTACCCGTATGCTACCCCACAACAACGGTTGTGGTGCAAGCAAGAACATGACACTACTGCCATCGCCGCCGACAACTTCTTCCCACATGGTGGGGCTATGGACTCGATGGACCACAGCTCGGGGTCGAGCTCCGTGGTTTACAGCAGTGGTAACGGAGATGGGTACAGCGGGAACTTCTTGATCCCAATGGGAGCGGGAGGGGCGGAAGGGAGCAGCAGCAACAACAACAATAGTGGATTGGGAGACATGGGAGAAGTGAATTTATTTGGTAGTTGTTCTAACGTGGATGATTCATACAATGCAACAAGAACGACCAATTTGTATAATTATCATAACCCCTCTCATCAGCTGCAACCACCGCCGCTGTCGTCGGGGTTGCAAGGTTCTAGCTGCAACAACTGGCTTCCTCCGGCAAGGTCAGTTTGTCACGGGGGAGCTCCGCCGCCTTTCACCATTTGGAATGACACTTAG 1971 50.68 MGSINWLGFSLSPQHQPSDHPPAAAPFTSDQISPSDVSAVCFDNLPSSYGVYEPFNRNNHSQDWNSMKGLGSTQSSDFSALIETQHQPKLENFLGHHSFTDHDHAAAVYTNASANYMFQNCSLELPSEAGGGDDGGGRPNAGNGNTNNTSSIGLSMIKTWLRNQPAPPQAVTKSGGDHDGVVGIGNNITSAHTLSLSMNTGPPPQSQSSGSAALPLLTANGGESSSSDNKQGKSSAAELDTENGAVEAVPRKSVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQTRKGRQVYLGGYDKEEKAARAYDLAALKYWGTTTTTNFPISDYEKELEDMKHMTRQEFVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKAILESNTLPIGGAAKRLKDIDHSDIPLDPQRTDDTITSHLSDGIITTTTAPYSGGGWPTLAFHHHPYAFHYPYATPQQRLWCKQEHDTTAIAADNFFPHGGAMDSMDHSSGSSSVVYSSGNGDGYSGNFLIPMGAGGAEGSSSNNNNSGLGDMGEVNLFGSCSNVDDSYNATRTTNLYNYHNPSHQLQPPPLSSGLQGSSCNNWLPPARSVCHGGAPPPFTIWNDT 656
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 13224340 13228508 + CcPI632755_11g009160.1 Cco11g0916 192152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g0916 656 MobiDBLite consensus disorder prediction 186 238 - -
Cco11g0916 656 FunFam AP2-like ethylene-responsive transcription factor ANT 262 331 - -
Cco11g0916 656 Gene3D AP2/ERF domain 365 425 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco11g0916 656 Gene3D AP2/ERF domain 263 331 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco11g0916 656 MobiDBLite consensus disorder prediction 165 253 - -
Cco11g0916 656 PRINTS Ethylene responsive element binding protein signature 264 275 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco11g0916 656 PRINTS Ethylene responsive element binding protein signature 405 425 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco11g0916 656 ProSiteProfiles AP2/ERF domain profile. 365 423 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco11g0916 656 SMART rav1_2 365 429 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco11g0916 656 SMART rav1_2 263 335 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco11g0916 656 MobiDBLite consensus disorder prediction 10 29 - -
Cco11g0916 656 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 205 458 - -
Cco11g0916 656 MobiDBLite consensus disorder prediction 128 151 - -
Cco11g0916 656 FunFam AP2-like ethylene-responsive transcription factor 364 425 - -
Cco11g0916 656 Pfam AP2 domain 264 321 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco11g0916 656 Pfam AP2 domain 366 415 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco11g0916 656 CDD AP2 262 331 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco11g0916 656 SUPERFAMILY DNA-binding domain 364 425 IPR016177 GO:0003677(InterPro)
Cco11g0916 656 ProSiteProfiles AP2/ERF domain profile. 263 329 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco11g0916 656 CDD AP2 364 425 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco11g0916 656 SUPERFAMILY DNA-binding domain 262 331 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g2489 Cco-Chr2:37230020 Cco11g0916 Cco-Chr11:13224340 1.50E-103 dispersed
Cco06g1537 Cco-Chr6:25868736 Cco11g0916 Cco-Chr11:13224340 1.50E-101 dispersed
Cco07g1482 Cco-Chr7:28971771 Cco11g0916 Cco-Chr11:13224340 6.40E-98 dispersed
Cco10g0737 Cco-Chr10:10917055 Cco11g0916 Cco-Chr11:13224340 1.10E-99 dispersed
Cco10g1476 Cco-Chr10:27846823 Cco11g0916 Cco-Chr11:13224340 1.50E-64 dispersed
Cco10g1567 Cco-Chr10:28876204 Cco11g0916 Cco-Chr11:13224340 7.50E-45 dispersed
Cco10g2053 Cco-Chr10:33922839 Cco11g0916 Cco-Chr11:13224340 1.30E-42 dispersed
Cco11g0916 Cco-Chr11:13224340 Cco05g1164 Cco-Chr5:10746004 7.50E-08 dispersed
Cco11g0916 Cco-Chr11:13224340 Cco08g1852 Cco-Chr8:29537290 2.50E-96 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60264 PF00847 AP2 1.50E-12 CL0081 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g0916 K09285 - csv:101219473 1069.3