Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g0927 ATGCAGACAGGGCCGACCGGCGGGAACAGCTTGCAAACTGGCGTCAAAACCCTAAAAAATCAACTCCATGAGATATTGGCAAATTCCAAACCTTGTCCGAAATGCAAACGTCCTATTGAGAAAAATCAAGGGTGCATGCATATTACTTGCACACCACCTTGTAAATTTGAGTTCTGCTGGCTTTGCCTTGGTCCATGGTCTGATCATGGAGAAAGGACAGGAGGATTTTATGCATGTAATCGCTATGAAACTGCAAAGCAAGAGGGAGTGTATGATGATGCTGAAAAGCGTAGAGAGATGGCCAAGAATTCTCTGGAGAGATATACTCATTATTATGAAAGATGGGCTACCAACCAATCGTCTAGGCAAAAGGCACTTGCGGATCTCCATCAAATGCAAACCGTGCATCTCGAAAAGTTAAGTGACATTCAGTGCCAACCTGAGTCACAGCTTAAGTTCATAAGCGAAGCATGGCTACAGATTGTCGAGTGTAGGCGAGTTCTTAAATGGACTTATGCCTATGGATATTATCTACCTGAGCGTGAACATGCCAAGAGACAATTCTTTGAATACTTGCAAGGTGAGGCTGAGTCTGGGTTGGAACGACTTCACCAATGTGCAGAAAAGGAGTTGCATGCTTACCTAAATGCTGCTGATGGTCCTTCAAAAGATTTCAATGAGTTCCGTACCAAACTTGCTGGACTAACCAGTGTAACTCGGAATTACTTCGAGAATTTAGTACGTGCGCTTGAGAATGGTCTGTCAGATGTGGATTCCCATGGTACCTGCAGCAAAACAGTAAGCTCAAAGAGTACTAGTGGCTGCAGGAGTAAAGGTGGGAAAGGCAAGATGAGTGCATTCAGAGCTAGCGATGTGCCAGCAACGGCGATAACCATATTCAGGCGTTGGAAATCCAACTTAGATGATGACGTTCGTTCCTTCGATCATCTGTTCTTGCTGGTCGGAATGCTCAAAGTGCATACTTTGGCTTTCAGAAGGATATGA 1005 44.58 MQTGPTGGNSLQTGVKTLKNQLHEILANSKPCPKCKRPIEKNQGCMHITCTPPCKFEFCWLCLGPWSDHGERTGGFYACNRYETAKQEGVYDDAEKRREMAKNSLERYTHYYERWATNQSSRQKALADLHQMQTVHLEKLSDIQCQPESQLKFISEAWLQIVECRRVLKWTYAYGYYLPEREHAKRQFFEYLQGEAESGLERLHQCAEKELHAYLNAADGPSKDFNEFRTKLAGLTSVTRNYFENLVRALENGLSDVDSHGTCSKTVSSKSTSGCRSKGGKGKMSAFRASDVPATAITIFRRWKSNLDDDVRSFDHLFLLVGMLKVHTLAFRRI 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 13872231 13882614 + CcPI632755_11g009270.1 Cco11g0927 192163

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g0927 334 Pfam Ariadne domain 92 254 IPR045840 -
Cco11g0927 334 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 28 155 IPR031127 GO:0000151(PANTHER)|GO:0000209(PANTHER)|GO:0004842(InterPro)|GO:0005737(PANTHER)|GO:0006511(PANTHER)|GO:0016567(InterPro)|GO:0031624(PANTHER)|GO:0032436(PANTHER)|GO:0061630(PANTHER)
Cco11g0927 334 FunFam RBR-type E3 ubiquitin transferase 15 257 - -
Cco11g0927 334 CDD Rcat_RBR_ARI7-like 28 82 - -
Cco11g0927 334 Gene3D - 13 257 - -
Cco11g0927 334 Pfam IBR domain 27 67 - -
Cco11g0927 334 ProSiteProfiles TRIAD supradomain profile. 1 83 IPR044066 -
Cco11g0927 334 SUPERFAMILY RING/U-box 19 83 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g0927 K11968 - - csv:101218052 541.962
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g0586 Cco-Chr8:15248446 Cco11g0927 Cco-Chr11:13872231 2.60E-129 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco09g1993 . 164 589 ARIADNE family AT4G34370 72.2 3.0e-183 638.3
Cco09g1993 . 58 542 ARIADNE family AT2G16090 77.2 1.4e-224 775.8
Cco09g1993 . 38 543 ARIADNE family AT3G27710 62.0 5.8e-184 641.0
Cco09g1993 . 44 522 ARIADNE family AT3G27720 54.5 5.4e-144 508.1
Cco08g0586 . 61 535 ARIADNE family AT1G05890 73.9 3.6e-219 758.1
Cco11g0927 . 14 273 ARIADNE family AT1G05890 73.2 1.0e-112 404.4
Cco08g0586 . 57 589 ARIADNE family AT1G65430 72.0 1.6e-240 828.9
Cco11g0927 . 25 274 ARIADNE family AT1G65430 84.8 2.2e-125 446.4
Cco08g0586 . 58 454 ARIADNE family AT2G31780 58.4 4.9e-144 508.1
Cco11g0927 . 16 188 ARIADNE family AT2G31780 54.3 1.1e-50 198.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001364 2 4 3 1 2 2 3 3 2 3 2 2 3 2 2 3 2 4 2 3 2 2 3 2 2 2 2 3 3 1 72