Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g0927 ATGCAGACAGGGCCGACCGGCGGGAACAGCTTGCAAACTGGCGTCAAAACCCTAAAAAATCAACTCCATGAGATATTGGCAAATTCCAAACCTTGTCCGAAATGCAAACGTCCTATTGAGAAAAATCAAGGGTGCATGCATATTACTTGCACACCACCTTGTAAATTTGAGTTCTGCTGGCTTTGCCTTGGTCCATGGTCTGATCATGGAGAAAGGACAGGAGGATTTTATGCATGTAATCGCTATGAAACTGCAAAGCAAGAGGGAGTGTATGATGATGCTGAAAAGCGTAGAGAGATGGCCAAGAATTCTCTGGAGAGATATACTCATTATTATGAAAGATGGGCTACCAACCAATCGTCTAGGCAAAAGGCACTTGCGGATCTCCATCAAATGCAAACCGTGCATCTCGAAAAGTTAAGTGACATTCAGTGCCAACCTGAGTCACAGCTTAAGTTCATAAGCGAAGCATGGCTACAGATTGTCGAGTGTAGGCGAGTTCTTAAATGGACTTATGCCTATGGATATTATCTACCTGAGCGTGAACATGCCAAGAGACAATTCTTTGAATACTTGCAAGGTGAGGCTGAGTCTGGGTTGGAACGACTTCACCAATGTGCAGAAAAGGAGTTGCATGCTTACCTAAATGCTGCTGATGGTCCTTCAAAAGATTTCAATGAGTTCCGTACCAAACTTGCTGGACTAACCAGTGTAACTCGGAATTACTTCGAGAATTTAGTACGTGCGCTTGAGAATGGTCTGTCAGATGTGGATTCCCATGGTACCTGCAGCAAAACAGTAAGCTCAAAGAGTACTAGTGGCTGCAGGAGTAAAGGTGGGAAAGGCAAGATGAGTGCATTCAGAGCTAGCGATGTGCCAGCAACGGCGATAACCATATTCAGGCGTTGGAAATCCAACTTAGATGATGACGTTCGTTCCTTCGATCATCTGTTCTTGCTGGTCGGAATGCTCAAAGTGCATACTTTGGCTTTCAGAAGGATATGA 1005 44.58 MQTGPTGGNSLQTGVKTLKNQLHEILANSKPCPKCKRPIEKNQGCMHITCTPPCKFEFCWLCLGPWSDHGERTGGFYACNRYETAKQEGVYDDAEKRREMAKNSLERYTHYYERWATNQSSRQKALADLHQMQTVHLEKLSDIQCQPESQLKFISEAWLQIVECRRVLKWTYAYGYYLPEREHAKRQFFEYLQGEAESGLERLHQCAEKELHAYLNAADGPSKDFNEFRTKLAGLTSVTRNYFENLVRALENGLSDVDSHGTCSKTVSSKSTSGCRSKGGKGKMSAFRASDVPATAITIFRRWKSNLDDDVRSFDHLFLLVGMLKVHTLAFRRI 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 13872231 13882614 + CcPI632755_11g009270.1 Cco11g0927 192163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g0927 334 Pfam Ariadne domain 92 254 IPR045840 -
Cco11g0927 334 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 28 155 IPR031127 GO:0000151(PANTHER)|GO:0000209(PANTHER)|GO:0004842(InterPro)|GO:0005737(PANTHER)|GO:0006511(PANTHER)|GO:0016567(InterPro)|GO:0031624(PANTHER)|GO:0032436(PANTHER)|GO:0061630(PANTHER)
Cco11g0927 334 FunFam RBR-type E3 ubiquitin transferase 15 257 - -
Cco11g0927 334 CDD Rcat_RBR_ARI7-like 28 82 - -
Cco11g0927 334 Gene3D - 13 257 - -
Cco11g0927 334 Pfam IBR domain 27 67 - -
Cco11g0927 334 ProSiteProfiles TRIAD supradomain profile. 1 83 IPR044066 -
Cco11g0927 334 SUPERFAMILY RING/U-box 19 83 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g0586 Cco-Chr8:15248446 Cco11g0927 Cco-Chr11:13872231 2.60E-129 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g0927 K11968 - csv:101218052 541.962