Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco11g0971 | ATGGGGTCCTGCTTGTCTTCGGAGAGCAGGAGCCCCATTCCTGGTTCCCCAACTTCTCCGGCTAAGCATCATCGGAGCAAGAACAGTTGCAAGAGGCGATATGGTTCTAGGAATTCCTCCTTTGGGGATCTCTCACTTCATCGGATCCCCGGCAGGCTCTTCGCTAATGGCTTCACTGATGTGGCGTCTCTGTTCACCCAGCAGGGCAAGAAAGGGACCAATCAGGATGCCATGATTGTTTGGGAGAATTTCGGCTCTAGAACTGATACGATCTTCTGTGGGGTTTTTGATGGCCATGGTCCCTATGGTCATATGGTTGCAAAGAAAGTGAGGGATTCTCTTCCTCTGAGGTTGAGTGCACATTGGGAGGTTAACTTGACCACGGATGATGTTCATAGAGAGATCAATCTTAATACAGGAAGTATGAACTCGGATGAAGCTACTTCCTTTTTATCTGCTGAAGAAGAGTCAAGGGCCTCCACTGATGTTGAAGGAACGGAAAAGCAACCTGAAATTTTCCATACTCTGAAGGAGTCATTTCTTAAGGCTTTTAGAGTTATGGACTGGGAACTCAGAATGCACCAAACTATAGATAGCTTCTGTAGTGGGACTACAGCAGTGACTATAGTTAAACAGGGTCAGGATCTTGTCATTGGAAATGTTGGGGACTCCCGAGCTGTTTTGGGTATGAGAGATAAAGATGACTCGCTTGTTGCCATTCAATTGACTGTGGATCTCAAGCCAAATCTTCCAGCTGAAGCAGAGAGAATCCGTAGGTGTAGAGGTCGTGTGTTTGCTCTCCAAGATGAACCTGATGTAGCTCGAGTTTGGCTTCCAAACAGCAACTCTCCTGGACTTGCCATGGCACGGGCATTTGGAGATTTCTGCCTCAAAGACTTTGGTCTTATCTCTGTACCAGAAATATCATATCGACGGCTCACTGAAAAAGACAAATTCATTGTTCTGGCTACAGATGGAATATGGGATGTTCTGTCAAACAAAGAGGTTGTAGATATTGTTGCATCAGCTCCAAAACGTACTACTGCAGCTCGAACTCTGGTTGAAACTGCCATTAAAGCATGGAAACATAAATACCCAACTTCCAAAATTGATGACTGTGCGGTCGTTTGCCTCTTCCTTGACTCAAACTCCAGCAATCTATCATCTGCTTCCAATACCAAACCGGAAGAGCAACAAAGTTTAACAGAACAAGTCAGCACTGCAGTTGAGAATGAAAATTTCTCTGTCCCAAATGGTCTGAATCGTTCAGGAACTATCCGAACCACCAGCAAGGAGATTTTGCAGGATGGAAGTGATGAAGAAGAAGATGAATCGAAGGAGGAAGAACATTCAGAAATGGGAATAGAATGGTCTGCCCTGGAAGGAGTGTCACGCGTAAACACTTTGGTAACCCTGCCAAGATTCGATCCTGGAAAAGAAGATACGAAAGGGCGGAAGTAA | 1461 | 45.38 | MGSCLSSESRSPIPGSPTSPAKHHRSKNSCKRRYGSRNSSFGDLSLHRIPGRLFANGFTDVASLFTQQGKKGTNQDAMIVWENFGSRTDTIFCGVFDGHGPYGHMVAKKVRDSLPLRLSAHWEVNLTTDDVHREINLNTGSMNSDEATSFLSAEEESRASTDVEGTEKQPEIFHTLKESFLKAFRVMDWELRMHQTIDSFCSGTTAVTIVKQGQDLVIGNVGDSRAVLGMRDKDDSLVAIQLTVDLKPNLPAEAERIRRCRGRVFALQDEPDVARVWLPNSNSPGLAMARAFGDFCLKDFGLISVPEISYRRLTEKDKFIVLATDGIWDVLSNKEVVDIVASAPKRTTAARTLVETAIKAWKHKYPTSKIDDCAVVCLFLDSNSSNLSSASNTKPEEQQSLTEQVSTAVENENFSVPNGLNRSGTIRTTSKEILQDGSDEEEDESKEEEHSEMGIEWSALEGVSRVNTLVTLPRFDPGKEDTKGRK | 486 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 15423598 | 15426532 | + | CcPI632755_11g009710.1 | Cco11g0971 | 192207 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco11g0971 | 486 | MobiDBLite | consensus disorder prediction | 146 | 166 | - | - | |
| Cco11g0971 | 486 | CDD | PP2Cc | 61 | 380 | IPR001932 | - | |
| Cco11g0971 | 486 | MobiDBLite | consensus disorder prediction | 1 | 36 | - | - | |
| Cco11g0971 | 486 | Gene3D | - | 59 | 383 | IPR036457 | - | |
| Cco11g0971 | 486 | MobiDBLite | consensus disorder prediction | 414 | 458 | - | - | |
| Cco11g0971 | 486 | SMART | PP2C_4 | 52 | 378 | IPR001932 | - | |
| Cco11g0971 | 486 | MobiDBLite | consensus disorder prediction | 1 | 16 | - | - | |
| Cco11g0971 | 486 | Pfam | Protein phosphatase 2C | 129 | 359 | IPR001932 | - | |
| Cco11g0971 | 486 | MobiDBLite | consensus disorder prediction | 414 | 432 | - | - | |
| Cco11g0971 | 486 | FunFam | probable protein phosphatase 2C 33 | 56 | 383 | - | - | |
| Cco11g0971 | 486 | SUPERFAMILY | PP2C-like | 61 | 381 | IPR036457 | - | |
| Cco11g0971 | 486 | PANTHER | PROTEIN PHOSPHATASE | 33 | 379 | IPR015655 | GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER) | |
| Cco11g0971 | 486 | ProSiteProfiles | PPM-type phosphatase domain profile. | 61 | 380 | IPR001932 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco02g1646 | Cco-Chr2:29069297 | Cco11g0971 | Cco-Chr11:15423598 | 9.10E-96 | dispersed | |
| Cco03g1057 | Cco-Chr3:18342714 | Cco11g0971 | Cco-Chr11:15423598 | 6.40E-143 | dispersed | |
| Cco04g0845 | Cco-Chr4:24030678 | Cco11g0971 | Cco-Chr11:15423598 | 3.00E-93 | dispersed | |
| Cco05g0657 | Cco-Chr5:5346639 | Cco11g0971 | Cco-Chr11:15423598 | 4.90E-24 | dispersed | |
| Cco06g0574 | Cco-Chr6:6181990 | Cco11g0971 | Cco-Chr11:15423598 | 1.30E-25 | dispersed | |
| Cco08g0583 | Cco-Chr8:15105839 | Cco11g0971 | Cco-Chr11:15423598 | 7.90E-132 | dispersed | |
| Cco10g0361 | Cco-Chr10:4223389 | Cco11g0971 | Cco-Chr11:15423598 | 4.30E-131 | dispersed | |
| Cco11g0971 | Cco-Chr11:15423598 | Cco11g1844 | Cco-Chr11:31126697 | 1.30E-17 | dispersed | |
| Cco11g0971 | Cco-Chr11:15423598 | Cco02g0124 | Cco-Chr2:1344607 | 1.30E-113 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco11g0971 | - | - | - | 0.0 |