Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g0971 ATGGGGTCCTGCTTGTCTTCGGAGAGCAGGAGCCCCATTCCTGGTTCCCCAACTTCTCCGGCTAAGCATCATCGGAGCAAGAACAGTTGCAAGAGGCGATATGGTTCTAGGAATTCCTCCTTTGGGGATCTCTCACTTCATCGGATCCCCGGCAGGCTCTTCGCTAATGGCTTCACTGATGTGGCGTCTCTGTTCACCCAGCAGGGCAAGAAAGGGACCAATCAGGATGCCATGATTGTTTGGGAGAATTTCGGCTCTAGAACTGATACGATCTTCTGTGGGGTTTTTGATGGCCATGGTCCCTATGGTCATATGGTTGCAAAGAAAGTGAGGGATTCTCTTCCTCTGAGGTTGAGTGCACATTGGGAGGTTAACTTGACCACGGATGATGTTCATAGAGAGATCAATCTTAATACAGGAAGTATGAACTCGGATGAAGCTACTTCCTTTTTATCTGCTGAAGAAGAGTCAAGGGCCTCCACTGATGTTGAAGGAACGGAAAAGCAACCTGAAATTTTCCATACTCTGAAGGAGTCATTTCTTAAGGCTTTTAGAGTTATGGACTGGGAACTCAGAATGCACCAAACTATAGATAGCTTCTGTAGTGGGACTACAGCAGTGACTATAGTTAAACAGGGTCAGGATCTTGTCATTGGAAATGTTGGGGACTCCCGAGCTGTTTTGGGTATGAGAGATAAAGATGACTCGCTTGTTGCCATTCAATTGACTGTGGATCTCAAGCCAAATCTTCCAGCTGAAGCAGAGAGAATCCGTAGGTGTAGAGGTCGTGTGTTTGCTCTCCAAGATGAACCTGATGTAGCTCGAGTTTGGCTTCCAAACAGCAACTCTCCTGGACTTGCCATGGCACGGGCATTTGGAGATTTCTGCCTCAAAGACTTTGGTCTTATCTCTGTACCAGAAATATCATATCGACGGCTCACTGAAAAAGACAAATTCATTGTTCTGGCTACAGATGGAATATGGGATGTTCTGTCAAACAAAGAGGTTGTAGATATTGTTGCATCAGCTCCAAAACGTACTACTGCAGCTCGAACTCTGGTTGAAACTGCCATTAAAGCATGGAAACATAAATACCCAACTTCCAAAATTGATGACTGTGCGGTCGTTTGCCTCTTCCTTGACTCAAACTCCAGCAATCTATCATCTGCTTCCAATACCAAACCGGAAGAGCAACAAAGTTTAACAGAACAAGTCAGCACTGCAGTTGAGAATGAAAATTTCTCTGTCCCAAATGGTCTGAATCGTTCAGGAACTATCCGAACCACCAGCAAGGAGATTTTGCAGGATGGAAGTGATGAAGAAGAAGATGAATCGAAGGAGGAAGAACATTCAGAAATGGGAATAGAATGGTCTGCCCTGGAAGGAGTGTCACGCGTAAACACTTTGGTAACCCTGCCAAGATTCGATCCTGGAAAAGAAGATACGAAAGGGCGGAAGTAA 1461 45.38 MGSCLSSESRSPIPGSPTSPAKHHRSKNSCKRRYGSRNSSFGDLSLHRIPGRLFANGFTDVASLFTQQGKKGTNQDAMIVWENFGSRTDTIFCGVFDGHGPYGHMVAKKVRDSLPLRLSAHWEVNLTTDDVHREINLNTGSMNSDEATSFLSAEEESRASTDVEGTEKQPEIFHTLKESFLKAFRVMDWELRMHQTIDSFCSGTTAVTIVKQGQDLVIGNVGDSRAVLGMRDKDDSLVAIQLTVDLKPNLPAEAERIRRCRGRVFALQDEPDVARVWLPNSNSPGLAMARAFGDFCLKDFGLISVPEISYRRLTEKDKFIVLATDGIWDVLSNKEVVDIVASAPKRTTAARTLVETAIKAWKHKYPTSKIDDCAVVCLFLDSNSSNLSSASNTKPEEQQSLTEQVSTAVENENFSVPNGLNRSGTIRTTSKEILQDGSDEEEDESKEEEHSEMGIEWSALEGVSRVNTLVTLPRFDPGKEDTKGRK 486
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
11 15423598 15426532 + CcPI632755_11g009710.1 Cco11g0971 192207
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cco11g0971 486 MobiDBLite consensus disorder prediction 146 166 - -
Cco11g0971 486 CDD PP2Cc 61 380 IPR001932 -
Cco11g0971 486 MobiDBLite consensus disorder prediction 1 36 - -
Cco11g0971 486 Gene3D - 59 383 IPR036457 -
Cco11g0971 486 MobiDBLite consensus disorder prediction 414 458 - -
Cco11g0971 486 SMART PP2C_4 52 378 IPR001932 -
Cco11g0971 486 MobiDBLite consensus disorder prediction 1 16 - -
Cco11g0971 486 Pfam Protein phosphatase 2C 129 359 IPR001932 -
Cco11g0971 486 MobiDBLite consensus disorder prediction 414 432 - -
Cco11g0971 486 FunFam probable protein phosphatase 2C 33 56 383 - -
Cco11g0971 486 SUPERFAMILY PP2C-like 61 381 IPR036457 -
Cco11g0971 486 PANTHER PROTEIN PHOSPHATASE 33 379 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Cco11g0971 486 ProSiteProfiles PPM-type phosphatase domain profile. 61 380 IPR001932 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1646 Cco-Chr2:29069297 Cco11g0971 Cco-Chr11:15423598 9.10E-96 dispersed
Cco03g1057 Cco-Chr3:18342714 Cco11g0971 Cco-Chr11:15423598 6.40E-143 dispersed
Cco04g0845 Cco-Chr4:24030678 Cco11g0971 Cco-Chr11:15423598 3.00E-93 dispersed
Cco05g0657 Cco-Chr5:5346639 Cco11g0971 Cco-Chr11:15423598 4.90E-24 dispersed
Cco06g0574 Cco-Chr6:6181990 Cco11g0971 Cco-Chr11:15423598 1.30E-25 dispersed
Cco08g0583 Cco-Chr8:15105839 Cco11g0971 Cco-Chr11:15423598 7.90E-132 dispersed
Cco10g0361 Cco-Chr10:4223389 Cco11g0971 Cco-Chr11:15423598 4.30E-131 dispersed
Cco11g0971 Cco-Chr11:15423598 Cco11g1844 Cco-Chr11:31126697 1.30E-17 dispersed
Cco11g0971 Cco-Chr11:15423598 Cco02g0124 Cco-Chr2:1344607 1.30E-113 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g0971 - - - 0.0