Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g0984 ATGCAGAATCATCAACAAATGAACTTGGTTTTGTCTACTGATGCAAAGCCAAGGCTGAAATGGACTTCTGAGCTTCATCAAAGATTTGTTGAGGCTGTCAATCATCTTGGTGGAGCAGATAAGGCCACCCCTAAGAGCTTGATGAGAGTTATGGGAATCACTGGCCTTAGTCTTTACCATCTCAAGAGCCACTTACAGAAATACAGGTTGGGAAAAAGCCAGCAGTCTGAAACCAATGCCCAACTCAAGCTAGAAGAGATGCAGAGAAAAGGTGGGCATTTTGATGGAGAAGAAAACAAGGATAGAAGTCAAAATCATAACAAAACAGAGAACATGAAGATATCCGAAGCTCTAGAAATACAATTGGAAGTACAGAAGAGATTACAAGAGCAAATAGAGGTACAAAGGCATTTACAACTGAGAATCGAAGCACAAGGAAAATATTTAAAGACAGTGTTAAGAAAGGCACAAGAGACAATTGCAGGGTACGGATGTTGTTCTGAAGCACTTGAAGAGGCCAAAGCAGAGCTCTCTCAATTGGTTTCAATGGTGAGTTCTGGTTGTCAGAGCTCTTCTTTATCAGAACTGACTGACTCGACAGAACTGAATTTCAAAGGCATTGAAAGAGTAGGAAGAAGAATGTGTTCCATTGAAAGCTCTTTAACGTCTTCAGAGACCTCAGAGGAGGCCCCAATCACGAAGAAGAGAAAAGGAAAAGAAAAGGAAAAGGAAAAAGAACAGAGCAGCTCTGTTTCTGAGGGAGATTGTAAGAGATTAACAATGCATACAAGTGATGAGGAACACGAGGAATTCAGAATGATCGACTTGAATGATTCTCAATTTGACGATAATACAAGTGGAATTGAATCACAGTTGATTGAGTTCCTTTAA 891 40.18 MQNHQQMNLVLSTDAKPRLKWTSELHQRFVEAVNHLGGADKATPKSLMRVMGITGLSLYHLKSHLQKYRLGKSQQSETNAQLKLEEMQRKGGHFDGEENKDRSQNHNKTENMKISEALEIQLEVQKRLQEQIEVQRHLQLRIEAQGKYLKTVLRKAQETIAGYGCCSEALEEAKAELSQLVSMVSSGCQSSSLSELTDSTELNFKGIERVGRRMCSIESSLTSSETSEEAPITKKRKGKEKEKEKEQSSSVSEGDCKRLTMHTSDEEHEEFRMIDLNDSQFDDNTSGIESQLIEFL 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 16134236 16135583 + CcPI632755_11g009840.1 Cco11g0984 192220

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g0984 296 SUPERFAMILY Homeodomain-like 15 71 IPR009057 -
Cco11g0984 296 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 13 73 IPR017930 -
Cco11g0984 296 FunFam Myb family transcription factor 15 73 - -
Cco11g0984 296 Pfam MYB-CC type transfactor, LHEQLE motif 112 159 IPR025756 -
Cco11g0984 296 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 3 277 IPR046955 GO:0003700(InterPro)
Cco11g0984 296 MobiDBLite consensus disorder prediction 218 284 - -
Cco11g0984 296 MobiDBLite consensus disorder prediction 90 111 - -
Cco11g0984 296 Gene3D - 15 73 - -
Cco11g0984 296 MobiDBLite consensus disorder prediction 229 277 - -
Cco11g0984 296 Pfam Myb-like DNA-binding domain 18 69 IPR001005 -
Cco11g0984 296 NCBIfam myb-like DNA-binding domain, SHAQKYF class 16 71 IPR006447 GO:0003677(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g0984 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco10g1314 Cco-Chr10:26074426 Cco11g0984 Cco-Chr11:16134236 1.70E-39 dispersed
Cco10g1671 Cco-Chr10:30106313 Cco11g0984 Cco-Chr11:16134236 3.60E-21 dispersed
Cco11g0288 Cco-Chr11:2925412 Cco11g0984 Cco-Chr11:16134236 3.10E-09 dispersed
Cco11g0984 Cco-Chr11:16134236 Cco11g1702 Cco-Chr11:29858356 5.90E-13 dispersed
Cco11g0984 Cco-Chr11:16134236 Cco02g2008 Cco-Chr2:33035249 3.10E-30 transposed
Cco11g0984 Cco-Chr11:16134236 Cco09g2488 Cco-Chr9:39010121 3.10E-30 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco05g0383 . 12 267 G2-like Transcription Factor Family AT3G24120 63.9 1.3e-79 293.5
Cco02g2008 . 22 192 G2-like Transcription Factor Family AT3G24120 54.6 4.4e-40 162.2
Cco07g0226 . 4 152 G2-like Transcription Factor Family AT3G24120 54.9 9.8e-40 161.0
Cco09g2488 . 16 166 G2-like Transcription Factor Family AT3G24120 58.9 1.3e-39 160.6
Cco04g1886 . 31 149 G2-like Transcription Factor Family AT3G24120 67.2 3.5e-37 152.5
Cco05g1222 . 248 448 G2-like Transcription Factor Family AT5G16560 57.3 1.4e-44 177.6
Cco09g1174 . 196 357 G2-like Transcription Factor Family AT5G16560 58.0 4.7e-37 152.5
Cco05g2205 . 1 167 G2-like Transcription Factor Family AT5G42630 58.3 1.5e-40 163.3
Cco08g1731 . 52 138 G2-like Transcription Factor Family AT5G42630 83.9 1.3e-36 150.2
Cco08g0647 . 20 258 G2-like Transcription Factor Family AT1G25550 54.9 8.5e-54 207.6
Cco05g2566 . 19 256 G2-like Transcription Factor Family AT1G25550 55.8 3.2e-53 205.7
Cco05g2566 . 19 352 G2-like Transcription Factor Family AT1G68670 50.6 5.9e-68 255.0
Cco03g0134 . 1 269 G2-like Transcription Factor Family AT3G46640 52.0 6.4e-61 231.5
Cco04g0701 . 1 301 G2-like Transcription Factor Family AT5G05090 57.1 4.2e-74 275.0
Cco10g1632 . 1 283 G2-like Transcription Factor Family AT5G05090 53.8 6.9e-69 257.7
Cco05g0383 . 12 315 G2-like Transcription Factor Family AT4G13640 58.0 3.0e-65 245.7
Cco05g0383 . 12 267 G2-like Transcription Factor Family AT3G24120 63.9 1.3e-79 293.5
Cco02g2008 . 22 192 G2-like Transcription Factor Family AT3G24120 54.6 4.4e-40 162.2
Cco07g0226 . 4 152 G2-like Transcription Factor Family AT3G24120 54.9 9.8e-40 161.0
Cco09g2488 . 16 166 G2-like Transcription Factor Family AT3G24120 58.9 1.3e-39 160.6
Cco04g1886 . 31 149 G2-like Transcription Factor Family AT3G24120 67.2 3.5e-37 152.5
Cco11g0984 . 1 228 G2-like Transcription Factor Family AT1G69580 55.6 2.4e-50 196.4
Cco09g2488 . 1 382 G2-like Transcription Factor Family AT1G79430 54.9 3.7e-86 315.5
Cco02g2008 . 1 181 G2-like Transcription Factor Family AT1G79430 85.2 2.8e-73 272.7
Cco05g0383 . 39 203 G2-like Transcription Factor Family AT1G79430 61.2 3.4e-39 159.5
Cco04g1885 . 97 339 G2-like Transcription Factor Family AT2G01060 62.3 5.9e-56 214.5
Cco04g0701 . 1 301 G2-like Transcription Factor Family AT3G10760 63.0 1.2e-91 333.6
Cco10g1632 . 1 283 G2-like Transcription Factor Family AT3G10760 58.4 2.8e-83 305.8
Cco04g0701 . 1 203 G2-like Transcription Factor Family AT2G40970 60.2 2.4e-60 229.2
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60265 PF00249 Myb_DNA-binding 1.10E-06 CL0123 Cco TF