Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g0984 ATGCAGAATCATCAACAAATGAACTTGGTTTTGTCTACTGATGCAAAGCCAAGGCTGAAATGGACTTCTGAGCTTCATCAAAGATTTGTTGAGGCTGTCAATCATCTTGGTGGAGCAGATAAGGCCACCCCTAAGAGCTTGATGAGAGTTATGGGAATCACTGGCCTTAGTCTTTACCATCTCAAGAGCCACTTACAGAAATACAGGTTGGGAAAAAGCCAGCAGTCTGAAACCAATGCCCAACTCAAGCTAGAAGAGATGCAGAGAAAAGGTGGGCATTTTGATGGAGAAGAAAACAAGGATAGAAGTCAAAATCATAACAAAACAGAGAACATGAAGATATCCGAAGCTCTAGAAATACAATTGGAAGTACAGAAGAGATTACAAGAGCAAATAGAGGTACAAAGGCATTTACAACTGAGAATCGAAGCACAAGGAAAATATTTAAAGACAGTGTTAAGAAAGGCACAAGAGACAATTGCAGGGTACGGATGTTGTTCTGAAGCACTTGAAGAGGCCAAAGCAGAGCTCTCTCAATTGGTTTCAATGGTGAGTTCTGGTTGTCAGAGCTCTTCTTTATCAGAACTGACTGACTCGACAGAACTGAATTTCAAAGGCATTGAAAGAGTAGGAAGAAGAATGTGTTCCATTGAAAGCTCTTTAACGTCTTCAGAGACCTCAGAGGAGGCCCCAATCACGAAGAAGAGAAAAGGAAAAGAAAAGGAAAAGGAAAAAGAACAGAGCAGCTCTGTTTCTGAGGGAGATTGTAAGAGATTAACAATGCATACAAGTGATGAGGAACACGAGGAATTCAGAATGATCGACTTGAATGATTCTCAATTTGACGATAATACAAGTGGAATTGAATCACAGTTGATTGAGTTCCTTTAA 891 40.18 MQNHQQMNLVLSTDAKPRLKWTSELHQRFVEAVNHLGGADKATPKSLMRVMGITGLSLYHLKSHLQKYRLGKSQQSETNAQLKLEEMQRKGGHFDGEENKDRSQNHNKTENMKISEALEIQLEVQKRLQEQIEVQRHLQLRIEAQGKYLKTVLRKAQETIAGYGCCSEALEEAKAELSQLVSMVSSGCQSSSLSELTDSTELNFKGIERVGRRMCSIESSLTSSETSEEAPITKKRKGKEKEKEKEQSSSVSEGDCKRLTMHTSDEEHEEFRMIDLNDSQFDDNTSGIESQLIEFL 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 16134236 16135583 + CcPI632755_11g009840.1 Cco11g0984 192220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g0984 296 SUPERFAMILY Homeodomain-like 15 71 IPR009057 -
Cco11g0984 296 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 13 73 IPR017930 -
Cco11g0984 296 FunFam Myb family transcription factor 15 73 - -
Cco11g0984 296 Pfam MYB-CC type transfactor, LHEQLE motif 112 159 IPR025756 -
Cco11g0984 296 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 3 277 IPR046955 GO:0003700(InterPro)
Cco11g0984 296 MobiDBLite consensus disorder prediction 218 284 - -
Cco11g0984 296 MobiDBLite consensus disorder prediction 90 111 - -
Cco11g0984 296 Gene3D - 15 73 - -
Cco11g0984 296 MobiDBLite consensus disorder prediction 229 277 - -
Cco11g0984 296 Pfam Myb-like DNA-binding domain 18 69 IPR001005 -
Cco11g0984 296 NCBIfam myb-like DNA-binding domain, SHAQKYF class 16 71 IPR006447 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco10g1314 Cco-Chr10:26074426 Cco11g0984 Cco-Chr11:16134236 1.70E-39 dispersed
Cco10g1671 Cco-Chr10:30106313 Cco11g0984 Cco-Chr11:16134236 3.60E-21 dispersed
Cco11g0288 Cco-Chr11:2925412 Cco11g0984 Cco-Chr11:16134236 3.10E-09 dispersed
Cco11g0984 Cco-Chr11:16134236 Cco11g1702 Cco-Chr11:29858356 5.90E-13 dispersed
Cco11g0984 Cco-Chr11:16134236 Cco02g2008 Cco-Chr2:33035249 3.10E-30 transposed
Cco11g0984 Cco-Chr11:16134236 Cco09g2488 Cco-Chr9:39010121 3.10E-30 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60265 PF00249 Myb_DNA-binding 1.10E-06 CL0123 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g0984 - - - 0.0