Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco11g0985 | ATGGAGTTTCATTTCCTCTTTTTAGTGCCCTTTCTCTCACTCCTCTCTTCCGCCGCCGCCTGGATTAATGCTCATGCCACCTTCTACGGCGGCAGCGATGCTTCCGGGACAATGGGTGGAGCTTGTGGGTACGGGAATCTTTACAGTGAAGGCTACGGAACCAACACTGCAGCAGTTAGCACTGCTCTTTTCAACAATGGGTTGAGTTGTGGGTCTTGTTATGAAATCAAGTGCGTTAATGACCCGAAATGGTGCCTCCATGGCTCTATTTTGGTCACTGCAACCAATTTCTGTCCGCCCAATAATGCACTTCCTAATAACGCCGGCGGCTGGTGCAACCCTCCCCTCCACCACTTTGACCTCTCCCAGTCCGTCTTCCTCCGCATTGCTCAATACCACGCCGGCATCGTCCCAGTCGTCTATCGTAGAGCTCCATGTAAGAGGAAGGGAGGAGTAAGGTTCACAATCAATGGGCATTCCTACTTCAACTTAGTGCTAATAACCAACGTCGGGGGCGCCGGGGATGTGCATGCGGTGTCCGTGAAAGGGTCTAGAACTGGTTGGCAATCAATGTCCAGAAATTGGGGACAGAACTGGCAAAGCCACACCTATTTGGATGGTCAAACCCTCTCTTTCAAGCTCACTACCAGCGACGGCCGTACGCTTATTTCCAACAATGTCGTTCCTGCCGGCTGGTCCTTTGGCCAGACCTTCACCGGCGCCCAATTCCGGAATGAGACAAGTGGGCCGAGGTGGACTCTTCTTACCACCCGCCTTTAA | 780 | 52.56 | MEFHFLFLVPFLSLLSSAAAWINAHATFYGGSDASGTMGGACGYGNLYSEGYGTNTAAVSTALFNNGLSCGSCYEIKCVNDPKWCLHGSILVTATNFCPPNNALPNNAGGWCNPPLHHFDLSQSVFLRIAQYHAGIVPVVYRRAPCKRKGGVRFTINGHSYFNLVLITNVGGAGDVHAVSVKGSRTGWQSMSRNWGQNWQSHTYLDGQTLSFKLTTSDGRTLISNNVVPAGWSFGQTFTGAQFRNETSGPRWTLLTTRL | 259 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 16321521 | 16323146 | + | CcPI632755_11g009850.1 | Cco11g0985 | 192221 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco11g0985 | 259 | Pfam | Lytic transglycolase | 56 | 141 | IPR009009 | - | |
| Cco11g0985 | 259 | Pfam | Expansin C-terminal domain | 152 | 229 | IPR007117 | - | |
| Cco11g0985 | 259 | PRINTS | Expansin signature | 126 | 139 | IPR002963 | GO:0009664(InterPro) | |
| Cco11g0985 | 259 | PRINTS | Expansin signature | 109 | 126 | IPR002963 | GO:0009664(InterPro) | |
| Cco11g0985 | 259 | PRINTS | Expansin signature | 51 | 65 | IPR002963 | GO:0009664(InterPro) | |
| Cco11g0985 | 259 | PRINTS | Expansin signature | 162 | 183 | IPR002963 | GO:0009664(InterPro) | |
| Cco11g0985 | 259 | PRINTS | Expansin signature | 78 | 89 | IPR002963 | GO:0009664(InterPro) | |
| Cco11g0985 | 259 | PRINTS | Expansin signature | 150 | 162 | IPR002963 | GO:0009664(InterPro) | |
| Cco11g0985 | 259 | PRINTS | Expansin signature | 90 | 100 | IPR002963 | GO:0009664(InterPro) | |
| Cco11g0985 | 259 | PRINTS | Expansin signature | 226 | 242 | IPR002963 | GO:0009664(InterPro) | |
| Cco11g0985 | 259 | PRINTS | Expansin signature | 197 | 218 | IPR002963 | GO:0009664(InterPro) | |
| Cco11g0985 | 259 | ProSiteProfiles | Expansin, family-45 endoglucanase-like domain profile. | 39 | 151 | IPR007112 | - | |
| Cco11g0985 | 259 | SUPERFAMILY | PHL pollen allergen | 148 | 240 | IPR036749 | - | |
| Cco11g0985 | 259 | Gene3D | - | 151 | 243 | IPR036749 | - | |
| Cco11g0985 | 259 | FunFam | Expansin | 13 | 147 | - | - | |
| Cco11g0985 | 259 | Gene3D | - | 13 | 147 | IPR036908 | - | |
| Cco11g0985 | 259 | CDD | DPBB_EXPA_N | 21 | 146 | - | - | |
| Cco11g0985 | 259 | ProSiteProfiles | Expansin, Cellulose-binding-like domain profile. | 161 | 240 | IPR007117 | - | |
| Cco11g0985 | 259 | SUPERFAMILY | Barwin-like endoglucanases | 12 | 169 | IPR036908 | - | |
| Cco11g0985 | 259 | SMART | dpbb_1 | 56 | 141 | IPR007112 | - | |
| Cco11g0985 | 259 | PRINTS | Expansin/Lol pI family signature | 20 | 35 | IPR007118 | GO:0005576(InterPro) | |
| Cco11g0985 | 259 | PRINTS | Expansin/Lol pI family signature | 38 | 56 | IPR007118 | GO:0005576(InterPro) | |
| Cco11g0985 | 259 | PRINTS | Expansin/Lol pI family signature | 60 | 78 | IPR007118 | GO:0005576(InterPro) | |
| Cco11g0985 | 259 | PRINTS | Expansin/Lol pI family signature | 188 | 202 | IPR007118 | GO:0005576(InterPro) | |
| Cco11g0985 | 259 | PRINTS | Expansin/Lol pI family signature | 134 | 150 | IPR007118 | GO:0005576(InterPro) | |
| Cco11g0985 | 259 | PRINTS | Expansin/Lol pI family signature | 226 | 240 | IPR007118 | GO:0005576(InterPro) | |
| Cco11g0985 | 259 | PANTHER | EXPANSIN-A15 | 9 | 243 | IPR002963 | GO:0009664(InterPro) | |
| Cco11g0985 | 259 | FunFam | Expansin | 151 | 243 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco01g1803 | Cco-Chr1:30718981 | Cco11g0985 | Cco-Chr11:16321521 | 1.00E-87 | dispersed | |
| Cco06g1813 | Cco-Chr6:28495715 | Cco11g0985 | Cco-Chr11:16321521 | 3.10E-111 | dispersed | |
| Cco07g0535 | Cco-Chr7:6861690 | Cco11g0985 | Cco-Chr11:16321521 | 3.00E-106 | dispersed | |
| Cco09g2019 | Cco-Chr9:34423639 | Cco11g0985 | Cco-Chr11:16321521 | 2.40E-105 | dispersed | |
| Cco09g2168 | Cco-Chr9:36068482 | Cco11g0985 | Cco-Chr11:16321521 | 4.80E-99 | dispersed | |
| Cco10g0638 | Cco-Chr10:8819650 | Cco11g0985 | Cco-Chr11:16321521 | 4.40E-67 | dispersed | |
| Cco11g0583 | Cco-Chr11:6253081 | Cco11g0985 | Cco-Chr11:16321521 | 8.40E-106 | dispersed | |
| Cco11g0985 | Cco-Chr11:16321521 | Cco05g2686 | Cco-Chr5:34845054 | 7.50E-121 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco11g0985 | - | - | - | 0.0 |