Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g0996 ATGGAGCATGGAGATGTTGTGTCGAAGGGCATGGTGTCAGACCCTTCAAGTTCGTACAAAAAAATCATAATAGTTGCAGCTATTGCAGCCGGAGTCCAATTTGGTTGGGCTCTCCAGCTTTCGTTGCTGACACCTTACGTACAGCAACTTGGAGTTTCACATACATGGTCAGCTTTCATATGGCTTTGTGGGCCATTATCAGGGCTTATTGTCCAACCCACTGTTGGATATTACAGCGATCGTTGCACTTCTAGGTTTGGTCGTCGTCGACCATTCATTGCTGCTGGGGCTGGCTTTGTGGCGGCTGCAGTTTTCCTCATTGGCTTTGCTGCAGATATTGGGCATGCAGCGGGAGATCAACTTGCTGCACGCACAAAACCAAGGGCTGTAGCCATATTTGTTGTCGGATTCTGGGTTCTTGATGTCGCTAACAACATGCTGCAAGGCCCTTGTAGAGCTTTGTTGGCAGATATGTCAGGTACCAACCACAAGAAGATGAGAATGGCCAATGGTTTTTTCTCCTTCTTCATGGGCGTAGGGAATGTTTTGGGTTACGCAGCTGGGTCCAATAACACACTCTATAAAGTCCTTCCCTTCACAATAACCAAAGCATGTGACACTTACTGTGCCAACCTCAAAACATGCTTCTTGATCGACATTGTGTTTCTCCTCCTCATTACCACCTTCGCCGTGTTTACAGTCAGCGAGAAGCAATTTGAGCGCTTGGAGATTGACGAAGAAGCAACACCCTTTTTCGGGAAGTTGCTTGGAGCACTCAAGAAGTTGGAGAAGCCCATGTGGATCTTGTTGCTCGTAACAGCTTTGAACTGGATTGGTTGGTTCCCATTTATAATGTATGACACTGACTGGATGGGTTTGGAAGTGTACGGAGGAAAGCCAAAGGGAACTCCAGAACAAGTCAAGTTCTATGACCTTGGTGTTCGTTCTGGGGCCCTTGGGTTGATGATAAACTCCTTTGTTCTAGGATTTTCAGCTTTAGCGATTGAGCCAATTAGTCGTATTCTAGGAGGTCTCAGGTGGTGGTGGGGAGTTGTGAACATCATATTCACCATTTGCATGGGATCCACCGTCGTTGTTACAAAGGTTGCTGAGCGGTGGAGGTCCGTTAACGGTTTGCGCTTTCCTCCCGCGAACATTAGGGCCGGAGCTTTTTCCATCTTTGCAGTCTTGGGTATTCCACTATCGGTCACTTTTAGCGTTCCCTTTGCACTTGCATCCATCTTTTCTTCAGAATCTGATGCGGGTCAAGGCCTCTCTTTGGGAATTCTCAACCTCTTCATTGTCATCCCACAGTTCATTGTGTCTGCAGTTAGTGGACCTTTAGATGCAGCTTTCGGAGGTGGAAACTTACCCGCATTTGTACTGGGTGGAATTGCTTCTTTTGCAAGCGCAATGTGCGCTATGTTCGTCCTTCCAGATCCACCACCTCAATCCGAAGTCTCCTTGACAGTGGGGGCTGGCCATTGA 1488 47.65 MEHGDVVSKGMVSDPSSSYKKIIIVAAIAAGVQFGWALQLSLLTPYVQQLGVSHTWSAFIWLCGPLSGLIVQPTVGYYSDRCTSRFGRRRPFIAAGAGFVAAAVFLIGFAADIGHAAGDQLAARTKPRAVAIFVVGFWVLDVANNMLQGPCRALLADMSGTNHKKMRMANGFFSFFMGVGNVLGYAAGSNNTLYKVLPFTITKACDTYCANLKTCFLIDIVFLLLITTFAVFTVSEKQFERLEIDEEATPFFGKLLGALKKLEKPMWILLLVTALNWIGWFPFIMYDTDWMGLEVYGGKPKGTPEQVKFYDLGVRSGALGLMINSFVLGFSALAIEPISRILGGLRWWWGVVNIIFTICMGSTVVVTKVAERWRSVNGLRFPPANIRAGAFSIFAVLGIPLSVTFSVPFALASIFSSESDAGQGLSLGILNLFIVIPQFIVSAVSGPLDAAFGGGNLPAFVLGGIASFASAMCAMFVLPDPPPQSEVSLTVGAGH 495
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 17184521 17186096 - CcPI632755_11g009960.1 Cco11g0996 192232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g0996 495 Pfam MFS/sugar transport protein 28 279 - -
Cco11g0996 495 SUPERFAMILY MFS general substrate transporter 21 484 IPR036259 -
Cco11g0996 495 CDD MFS_SLC45_SUC 31 476 - -
Cco11g0996 495 Gene3D MFS general substrate transporter like domains 16 486 IPR036259 -
Cco11g0996 495 PANTHER SUGAR TRANSPORTER 14 477 - GO:0005773(PANTHER)|GO:0005886(PANTHER)|GO:0008506(PANTHER)|GO:0016020(PANTHER)
Cco11g0996 495 NCBIfam sucrose/proton symporter 18 482 IPR005989 GO:0005886(InterPro)|GO:0008515(InterPro)|GO:0015770(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g1350 Cco-Chr8:25417159 Cco11g0996 Cco-Chr11:17184521 8.20E-124 dispersed
Cco09g2395 Cco-Chr9:38154907 Cco11g0996 Cco-Chr11:17184521 3.30E-114 dispersed
Cco11g0996 Cco-Chr11:17184521 Cco11g1003 Cco-Chr11:17914763 6.80E-288 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g0996 K15378 - csv:116401998 891.723