Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g0996 ATGGAGCATGGAGATGTTGTGTCGAAGGGCATGGTGTCAGACCCTTCAAGTTCGTACAAAAAAATCATAATAGTTGCAGCTATTGCAGCCGGAGTCCAATTTGGTTGGGCTCTCCAGCTTTCGTTGCTGACACCTTACGTACAGCAACTTGGAGTTTCACATACATGGTCAGCTTTCATATGGCTTTGTGGGCCATTATCAGGGCTTATTGTCCAACCCACTGTTGGATATTACAGCGATCGTTGCACTTCTAGGTTTGGTCGTCGTCGACCATTCATTGCTGCTGGGGCTGGCTTTGTGGCGGCTGCAGTTTTCCTCATTGGCTTTGCTGCAGATATTGGGCATGCAGCGGGAGATCAACTTGCTGCACGCACAAAACCAAGGGCTGTAGCCATATTTGTTGTCGGATTCTGGGTTCTTGATGTCGCTAACAACATGCTGCAAGGCCCTTGTAGAGCTTTGTTGGCAGATATGTCAGGTACCAACCACAAGAAGATGAGAATGGCCAATGGTTTTTTCTCCTTCTTCATGGGCGTAGGGAATGTTTTGGGTTACGCAGCTGGGTCCAATAACACACTCTATAAAGTCCTTCCCTTCACAATAACCAAAGCATGTGACACTTACTGTGCCAACCTCAAAACATGCTTCTTGATCGACATTGTGTTTCTCCTCCTCATTACCACCTTCGCCGTGTTTACAGTCAGCGAGAAGCAATTTGAGCGCTTGGAGATTGACGAAGAAGCAACACCCTTTTTCGGGAAGTTGCTTGGAGCACTCAAGAAGTTGGAGAAGCCCATGTGGATCTTGTTGCTCGTAACAGCTTTGAACTGGATTGGTTGGTTCCCATTTATAATGTATGACACTGACTGGATGGGTTTGGAAGTGTACGGAGGAAAGCCAAAGGGAACTCCAGAACAAGTCAAGTTCTATGACCTTGGTGTTCGTTCTGGGGCCCTTGGGTTGATGATAAACTCCTTTGTTCTAGGATTTTCAGCTTTAGCGATTGAGCCAATTAGTCGTATTCTAGGAGGTCTCAGGTGGTGGTGGGGAGTTGTGAACATCATATTCACCATTTGCATGGGATCCACCGTCGTTGTTACAAAGGTTGCTGAGCGGTGGAGGTCCGTTAACGGTTTGCGCTTTCCTCCCGCGAACATTAGGGCCGGAGCTTTTTCCATCTTTGCAGTCTTGGGTATTCCACTATCGGTCACTTTTAGCGTTCCCTTTGCACTTGCATCCATCTTTTCTTCAGAATCTGATGCGGGTCAAGGCCTCTCTTTGGGAATTCTCAACCTCTTCATTGTCATCCCACAGTTCATTGTGTCTGCAGTTAGTGGACCTTTAGATGCAGCTTTCGGAGGTGGAAACTTACCCGCATTTGTACTGGGTGGAATTGCTTCTTTTGCAAGCGCAATGTGCGCTATGTTCGTCCTTCCAGATCCACCACCTCAATCCGAAGTCTCCTTGACAGTGGGGGCTGGCCATTGA 1488 47.65 MEHGDVVSKGMVSDPSSSYKKIIIVAAIAAGVQFGWALQLSLLTPYVQQLGVSHTWSAFIWLCGPLSGLIVQPTVGYYSDRCTSRFGRRRPFIAAGAGFVAAAVFLIGFAADIGHAAGDQLAARTKPRAVAIFVVGFWVLDVANNMLQGPCRALLADMSGTNHKKMRMANGFFSFFMGVGNVLGYAAGSNNTLYKVLPFTITKACDTYCANLKTCFLIDIVFLLLITTFAVFTVSEKQFERLEIDEEATPFFGKLLGALKKLEKPMWILLLVTALNWIGWFPFIMYDTDWMGLEVYGGKPKGTPEQVKFYDLGVRSGALGLMINSFVLGFSALAIEPISRILGGLRWWWGVVNIIFTICMGSTVVVTKVAERWRSVNGLRFPPANIRAGAFSIFAVLGIPLSVTFSVPFALASIFSSESDAGQGLSLGILNLFIVIPQFIVSAVSGPLDAAFGGGNLPAFVLGGIASFASAMCAMFVLPDPPPQSEVSLTVGAGH 495
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 17184521 17186096 - CcPI632755_11g009960.1 Cco11g0996 192232

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g0996 495 Pfam MFS/sugar transport protein 28 279 - -
Cco11g0996 495 SUPERFAMILY MFS general substrate transporter 21 484 IPR036259 -
Cco11g0996 495 CDD MFS_SLC45_SUC 31 476 - -
Cco11g0996 495 Gene3D MFS general substrate transporter like domains 16 486 IPR036259 -
Cco11g0996 495 PANTHER SUGAR TRANSPORTER 14 477 - GO:0005773(PANTHER)|GO:0005886(PANTHER)|GO:0008506(PANTHER)|GO:0016020(PANTHER)
Cco11g0996 495 NCBIfam sucrose/proton symporter 18 482 IPR005989 GO:0005886(InterPro)|GO:0008515(InterPro)|GO:0015770(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g0996 K15378 - - csv:116401998 891.723
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g1350 Cco-Chr8:25417159 Cco11g0996 Cco-Chr11:17184521 8.20E-124 dispersed
Cco09g2395 Cco-Chr9:38154907 Cco11g0996 Cco-Chr11:17184521 3.30E-114 dispersed
Cco11g0996 Cco-Chr11:17184521 Cco11g1003 Cco-Chr11:17914763 6.80E-288 proximal
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco11g0996 . 14 484 Sucrose Transporter Gene Family AT1G22710 62.3 8.9e-174 607.1
Cco11g1003 . 14 484 Sucrose Transporter Gene Family AT1G22710 62.3 8.9e-174 607.1
Cco08g1350 . 32 477 Sucrose Transporter Gene Family AT1G22710 50.9 2.4e-131 466.1
Cco11g0996 . 14 479 Sucrose Transporter Gene Family AT2G14670 63.0 3.6e-172 601.7
Cco11g1003 . 14 479 Sucrose Transporter Gene Family AT2G14670 63.0 3.6e-172 601.7
Cco08g1350 . 25 477 Sucrose Transporter Gene Family AT2G14670 52.7 9.9e-130 460.7
Cco11g0996 . 14 409 Sucrose Transporter Gene Family AT1G66570 60.8 8.5e-144 507.3
Cco11g1003 . 14 409 Sucrose Transporter Gene Family AT1G66570 60.8 8.5e-144 507.3
Cco08g1350 . 25 424 Sucrose Transporter Gene Family AT1G66570 51.2 3.6e-110 395.6
Cco09g2395 . 152 598 Sucrose Transporter Gene Family AT2G02860 70.1 1.0e-181 633.3
Cco11g0996 . 8 479 Sucrose Transporter Gene Family AT5G06170 60.5 5.7e-162 567.8
Cco11g1003 . 8 479 Sucrose Transporter Gene Family AT5G06170 60.5 5.7e-162 567.8
Cco08g1350 . 31 477 Sucrose Transporter Gene Family AT5G06170 51.1 8.1e-124 441.0
Cco11g0996 . 17 479 Sucrose Transporter Gene Family AT5G43610 63.0 2.6e-170 595.5
Cco11g1003 . 17 479 Sucrose Transporter Gene Family AT5G43610 63.0 2.6e-170 595.5
Cco08g1350 . 31 477 Sucrose Transporter Gene Family AT5G43610 52.1 6.0e-127 451.4
Cco08g1350 . 18 478 Sucrose Transporter Gene Family AT1G09960 70.6 2.0e-194 675.6
Cco11g0996 . 8 489 Sucrose Transporter Gene Family AT1G09960 50.9 8.4e-132 467.6
Cco11g1003 . 8 489 Sucrose Transporter Gene Family AT1G09960 50.9 8.4e-132 467.6
Cco11g0996 . 14 495 Sucrose Transporter Gene Family AT1G71880 60.9 1.0e-169 593.6
Cco11g1003 . 14 495 Sucrose Transporter Gene Family AT1G71880 60.9 1.0e-169 593.6
Cco08g1350 . 31 477 Sucrose Transporter Gene Family AT1G71880 52.8 8.1e-127 451.1
Cco11g0996 . 17 484 Sucrose Transporter Gene Family AT1G71890 60.0 3.7e-164 575.1
Cco11g1003 . 17 484 Sucrose Transporter Gene Family AT1G71890 60.0 3.7e-164 575.1
Cco11g0996 . 14 495 Sucrose Transporter Gene Family AT1G71880 60.9 1.0e-169 593.6
Cco11g1003 . 14 495 Sucrose Transporter Gene Family AT1G71880 60.9 1.0e-169 593.6
Cco08g1350 . 31 477 Sucrose Transporter Gene Family AT1G71880 52.8 8.1e-127 451.1
Cco11g0996 . 14 484 Sucrose Transporter Gene Family AT1G22710 62.3 8.9e-174 607.1
Cco11g1003 . 14 484 Sucrose Transporter Gene Family AT1G22710 62.3 8.9e-174 607.1
Cco08g1350 . 32 477 Sucrose Transporter Gene Family AT1G22710 50.9 2.4e-131 466.1
Cco09g2395 . 152 598 Sucrose Transporter Gene Family AT2G02860 70.1 1.0e-181 633.3
Cco08g1350 . 18 478 Sucrose Transporter Gene Family AT1G09960 70.6 2.0e-194 675.6
Cco11g0996 . 8 489 Sucrose Transporter Gene Family AT1G09960 50.9 8.4e-132 467.6
Cco11g1003 . 8 489 Sucrose Transporter Gene Family AT1G09960 50.9 8.4e-132 467.6
Cco11g0996 . 17 484 Sucrose Transporter Gene Family AT1G71890 60.0 3.7e-164 575.1
Cco11g1003 . 17 484 Sucrose Transporter Gene Family AT1G71890 60.0 3.7e-164 575.1
Cco11g0996 . 17 479 Sucrose Transporter Gene Family AT5G43610 63.0 2.6e-170 595.5
Cco11g1003 . 17 479 Sucrose Transporter Gene Family AT5G43610 63.0 2.6e-170 595.5
Cco08g1350 . 31 477 Sucrose Transporter Gene Family AT5G43610 52.1 6.0e-127 451.4
Cco11g0996 . 14 409 Sucrose Transporter Gene Family AT1G66570 60.8 8.5e-144 507.3
Cco11g1003 . 14 409 Sucrose Transporter Gene Family AT1G66570 60.8 8.5e-144 507.3
Cco08g1350 . 25 424 Sucrose Transporter Gene Family AT1G66570 51.2 3.6e-110 395.6
Cco11g0996 . 14 479 Sucrose Transporter Gene Family AT2G14670 63.0 3.6e-172 601.7
Cco11g1003 . 14 479 Sucrose Transporter Gene Family AT2G14670 63.0 3.6e-172 601.7
Cco08g1350 . 25 477 Sucrose Transporter Gene Family AT2G14670 52.7 9.9e-130 460.7
Cco11g0996 . 8 479 Sucrose Transporter Gene Family AT5G06170 60.5 5.7e-162 567.8
Cco11g1003 . 8 479 Sucrose Transporter Gene Family AT5G06170 60.5 5.7e-162 567.8
Cco08g1350 . 31 477 Sucrose Transporter Gene Family AT5G06170 51.1 8.1e-124 441.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002342 4 2 1 7 5 1 2 2 1 1 2 2 3 1 3 2 2 1 1 2 3 2 1 1 2 2 1 1 1 1 60