Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g1034 ATGGCCACTGTTTCTTGCCAACCTTCCGATTTGGCACCCCTTCTCGGCTCAGCAGCCACCGCGAATTCAACCGCCATAGCCGAGTTCTTATGCTCAAGATTCACCACCATAGCCACCACTTTCAGCTCCACCACCTACGCCGTCGACAACACATACCTCCTCTTCTCCGCCTACCTCGTCTTCGCCATGCAGCTGGGGTTTGCCATGCTTTGTGCTGGCTCGGTCCGTGCCAAAAACACCATGAACATCATGCTCACCAACGTCCTCGATGCTGCGGCCGGTGGCCTCTCCTACTACCTCTTTGGCTTTGCCTTTGCCTTTGGTGCCCCCTCCAACTCCTTCATCGGCCGCCACTTTTTTGGCCTTTCCAATTTCCCCAACCCCTCTACTGATTATAGCTTCTTTCTCTATCAATGGGCATTTGCTATTGCTGCTGCAGGCATCACTAGTGGTTCCATTGCTGAGCGAACTCAATTTGTTGCCTATCTCATCTATTCTAGCATTCTTACTGGTTTCGTTTATCCCATAGTCTCCCACTGGTTTTGGTCTGCCGATGGGTGGGCTAGCCCAACCCGACCCAGTAACCTTATGTTCAATTCAGGGGCAATCGACTTTGCCGGATCAGGTGTGGTCCACATGGTCGGCGGCATAGCTGGTCTCTGGGGTGCCCTAATCGAAGGCCCTCAGATCGGCCGGTTTGATCGATCTGGCCGTTCTGTAGCCCTTCGCGGCCATAGTGCCTCCTTAGTAGTTCTTGGCTCTTTCCTCCTCTGGTTCGGGTGGTATGGGTTCAACCCAGGTTCATTTCTAACAATCTCCAAATCATACAATGATGGTCGCCCTTACTACGGACAATGGAGCGCCATAGGTCGAACTGGAGTCACCACAACACTAGCTGGATGCACAGCTGCCTTAACAACCCTCTTTACAAAACGCTTATTAGTTGGCCATTGGAACGTAATCGATGTATGCAATGGCCTATTAGGTGGATTTGCCGCAATCACGTCCGGTTGCGCCGTTGTTGAGCCATGGGCTGCGGTGATATGTGGATTTGTAGCATCCTGCGTGTTAACTGGCTTCAACAAGCTAGCTGAGAAGGTCAGCTACGATGACCCACTCGAGGCGGCACAACTGCATGGCGGGTGTGGGGCGTGGGGCTTGATATTCACAGGATTATTTGCAAGAAAGGAGTATGTAGCAGAGGTTTACCAGGCCGGGCGTCCATATGGGTTGTTGATGGGTGGCGGAGGGAGGCTGCTGGCGGCCCAGTTGGTGGAGATAATGGCGATAATTGGGTGGGTTTCTGTAACGATGGGGGGATTGTTTTATGGGCTGAAGAAGGTGAAATTGTTGAGAATATCAAGGGAAGATGAGATGGCTGGGATGGATTTGACAAGACATGGAGGTTTTGCTTATGTATATAATGATGAGGAGGATCCGTCTGCAAAGCCATCTGGATTTATGATGAGGAGAATTGAGCCTGCTAATGAAACTCCTCCTCAACAGAATTCTTCTTCAGGGATGGTAGCTGTTTGA 1536 51.3 MATVSCQPSDLAPLLGSAATANSTAIAEFLCSRFTTIATTFSSTTYAVDNTYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLSYYLFGFAFAFGAPSNSFIGRHFFGLSNFPNPSTDYSFFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSILTGFVYPIVSHWFWSADGWASPTRPSNLMFNSGAIDFAGSGVVHMVGGIAGLWGALIEGPQIGRFDRSGRSVALRGHSASLVVLGSFLLWFGWYGFNPGSFLTISKSYNDGRPYYGQWSAIGRTGVTTTLAGCTAALTTLFTKRLLVGHWNVIDVCNGLLGGFAAITSGCAVVEPWAAVICGFVASCVLTGFNKLAEKVSYDDPLEAAQLHGGCGAWGLIFTGLFARKEYVAEVYQAGRPYGLLMGGGGRLLAAQLVEIMAIIGWVSVTMGGLFYGLKKVKLLRISREDEMAGMDLTRHGGFAYVYNDEEDPSAKPSGFMMRRIEPANETPPQQNSSSGMVAV 511
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 19287421 19289719 + CcPI632755_11g010340.1 Cco11g1034 192270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g1034 511 Gene3D Ammonium transporter AmtB like domains 30 487 IPR029020 -
Cco11g1034 511 SUPERFAMILY Ammonium transporter 46 453 - -
Cco11g1034 511 FunFam Ammonium transporter 30 487 - -
Cco11g1034 511 Pfam Ammonium Transporter Family 52 472 IPR024041 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Cco11g1034 511 PANTHER AMMONIUM TRANSPORTER 19 481 - GO:0005887(PANTHER)|GO:0008519(PANTHER)|GO:0072488(PANTHER)|GO:0097272(PANTHER)
Cco11g1034 511 NCBIfam ammonium transporter 49 472 IPR001905 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g0145 Cco-Chr7:1488972 Cco11g1034 Cco-Chr11:19287421 4.70E-209 dispersed
Cco11g1034 Cco-Chr11:19287421 Cco11g1037 Cco-Chr11:19422051 1.10E-261 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g1034 K03320 - csv:101222356 921.768