Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g1037 ATGGCCACTCTTTCTTGCCAACCTTCCGATTTGGCGCCACTGCTCGGCTCCACAGGCACCACCAATTCCACCGCCATAGCTGAGTTCCTATGCTCAAGATTCACCACCATAGCCACCACTTTCAACTCCACCACCTACGCCGTTGACAACACATACCTCCTCTTCTCCGCCTACCTCGTCTTCGCCATGCAGCTGGGGTTTGCCATGCTTTGTGCTGGCTCGGTCCGTGCCAAAAACACCATGAACATCATGCTCACCAACGTCCTTGACGCCGCTGCCGGTGGCCTCTCCTACTACCTCTTTGGCTTTGCCTTTGCCTTTGGTGCCCCCTCCAACTCCTTCATCGGCCGCCACTTTTTTGACCTCTCCAGTGTCCCTAACCCCTCCACTGATTATAGCTTCTTTCTCTATCAATGGGCTTTTGCTATTGCCGCTGCAGGCATCACTAGTGGCTCCATAGCTGAGCGAACTCAATTCGTCGCCTACCTCATCTACTCAACTATTCTAACTGGCTTCATCTATCCTATAGTCTCCCACTGGTTCTGGTCTGCTGACGGGTGGGCCAGCCCAACCCGACCCAACAACCTCCTATTCAACTCAGGTGCAATCGACTTCGCCGGGTCAGGTGTGGTCCACATGGTTGGTGGCATAGCTGGCCTATGGGGAGCTTTAATCGAAGGCCCTCGAATCGGCCGGTTTGATCGATCTGGCCGATCTGTCGCCCTTCGCGGCCACAGCGCCTCCTTAGTGGTTCTCGGCTCCTTCCTCCTCTGGTTTGGCTGGTACGGATTTAACTCCGGCTCATTCCTAACAATCTCCAAATCCTACAATGACGGTCGTCCTTACTACGGCCAATGGAGCGCCATAGGTCGAACTGGAGTCACCACAACACTAGCTGGATGCACAGCTGCCTTAACAACCCTCTTTGCAAAACGCCTATTAGTTGGGCATTGGAATGTAATCGATGTGTGCAACGGCCTATTGGGCGGGTTCGCCGCCATCACATCCGGTTGTGCCGTGGTGGAGCCATGGGCGGCAGTGATATGTGGTTTCGTAGCATCATGGGTGTTAATTGGGTTAAACAAGCTAGCCGAGAGGGTGAGCTATGACGACCCACTAGAGGCGGCACAATTGCATGGCGGGTGTGGCGCGTGGGGTTTGATATTCACAGGATTATTTGCGACGAAGAAATACGTCGGTGAGGTATATCAAGCCGGGCGGCCGTACGGATTGTTGATGGGCGGTGGAGGGAGGCTGCTGGCAGCGCAGGTGGTGGAGATAGTAGCGATAGTCGGTTGGGTGTCTGTGACAATGGGGGGATTGTTTTATGGGCTGAAGAAAGGGAAACTATTAAGAATATCAAGAGAGGATGAAATGGCAGGGATGGATTTGACAAGGCATGGGGGATTTGCTTATGTATATAATGATGAGGAAGATCTATCAGAGAAGCCTTCAGGGTTTATGATGAGAAGGATTGAACCTACCGATGCTAGTTCTCCCGAGGAGCATACTTCTACGATCGGGGCTGTTTGA 1533 53.03 MATLSCQPSDLAPLLGSTGTTNSTAIAEFLCSRFTTIATTFNSTTYAVDNTYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLSYYLFGFAFAFGAPSNSFIGRHFFDLSSVPNPSTDYSFFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSTILTGFIYPIVSHWFWSADGWASPTRPNNLLFNSGAIDFAGSGVVHMVGGIAGLWGALIEGPRIGRFDRSGRSVALRGHSASLVVLGSFLLWFGWYGFNSGSFLTISKSYNDGRPYYGQWSAIGRTGVTTTLAGCTAALTTLFAKRLLVGHWNVIDVCNGLLGGFAAITSGCAVVEPWAAVICGFVASWVLIGLNKLAERVSYDDPLEAAQLHGGCGAWGLIFTGLFATKKYVGEVYQAGRPYGLLMGGGGRLLAAQVVEIVAIVGWVSVTMGGLFYGLKKGKLLRISREDEMAGMDLTRHGGFAYVYNDEEDLSEKPSGFMMRRIEPTDASSPEEHTSTIGAV 510
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 19422051 19424081 + CcPI632755_11g010370.1 Cco11g1037 192273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g1037 510 Pfam Ammonium Transporter Family 52 472 IPR024041 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Cco11g1037 510 ProSitePatterns Ammonium transporters signature. 204 229 IPR018047 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Cco11g1037 510 SUPERFAMILY Ammonium transporter 46 453 - -
Cco11g1037 510 PANTHER AMMONIUM TRANSPORTER 21 478 - GO:0005887(PANTHER)|GO:0008519(PANTHER)|GO:0072488(PANTHER)|GO:0097272(PANTHER)
Cco11g1037 510 NCBIfam ammonium transporter 49 472 IPR001905 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Cco11g1037 510 Gene3D Ammonium transporter AmtB like domains 30 487 IPR029020 -
Cco11g1037 510 FunFam Ammonium transporter 30 487 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g0789 Cco-Chr6:9122317 Cco11g1037 Cco-Chr11:19422051 1.60E-207 dispersed
Cco11g1034 Cco-Chr11:19287421 Cco11g1037 Cco-Chr11:19422051 1.10E-261 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g1037 K03320 - csv:101217871 929.472