Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco11g1094 ATGGCAGATTCATCACTTAATCCTTGGTCTTCTTTTCCAGAATCGGAAAATAGTGATGAATGTTATAGTTTTGTTGCTTCGGCAAATCCAGAGAACTCTGTCAATGTGTTGGTACTGGATACTGTTTTTCTTACATATGACATAGTTGCTCTAATTTCAAGACTGCTGTTACTTTTTTCCACAGACAGGGATATGGGGACAGAGCTTATGAGCGTCTGCGTTGAAGAAGATAGTGATGACTTTCCGTCGGTTCCACCAGGTTTTGAGTCATATATATCCTTTTCTCTAGGGAAGGTGCACAATCATGAAAAACAAGACAGTTGTGTCCCTGTTAGTTTGCCAACTGTCTCTGAATCACAACCAGTCAAAGTGGGAAGTGAGGTTGAAGGTGGCAATGTTGCAAAAGTTACAAGGTCCCTCCGGCGTAAACCATGTGTAAACTATAGACAATATGATTACTGCTCTGATGACGAGATTGATAGTACTAAGTGTCTAGATCAGAATTTTTCTTCAAGGCCTTCTCTTTCAAAGGGAGTCATCCGTGGATGTTCAGAATGTAATAATTGCCAAAAGGTTGTTGCCAGATGGCGTCCAGAAGAATCCTGCCGGCCGAACCTTGAGGATGCACCTGTGTTTTACCCAACCGAAGAGGAATTTGGAGATACTTTGACATATATAGCAAGCATACGAGCAAAAGCAGAACCATATGGGATTTGTCGTATTGTCCCGCCATCTTCTTGGAAACCTCCATGTCCCCTGAAGCAGAAACATATTTGGGAGGGGTCTAAATTTGCAACTCGTGTCCAAAGAATTGATAAGCTTCAAAATCGAGATTCAATAAGAAAGAACTCTAGGGTTTGCAGTCAGATGAGAAGGAAAAGGAGGAGGAGTAATCGAAAGGGGGTTGATGTTACCACCTTAAATGGCAAAATTGGAGATGCTGGCCCTGTTGAGGCGGAAAGATTTGGATTTGATCCTGGCCCAGATTTTACTTTAGCATTGTTTCAAAAATATGCAGATGACTTTAAGTCTCAGTATTTTAGTAAACCACTCAACGATACTACAAAGGGATGTAATCCATCTATGCTGCAAGAGAACAAACATTGGAAACCATCTTTAGAGGCTATTGAGGGTGAATATTGGCGGATGGTAGAGAAACCAACTGAAGAGATTGAGGTTCTCTATGGGGCTGATTTGGAAACTGGAGAGTTTGGCAGCGGCTTTCCAAAGATTTGCTGTCAAGAGGGCTCTACGTTGGATGAAGAGAAGTATGTAAAATCTGGCTGGAACCTGAATAACTTTCCTAAGCTTCCTGGATCAGTCCTTAGCTATGAGAGTAGCAATATATCTGGAGTCTTGGTACCATGGCTTTATATCGGGATGTGCTTTTCATCTTTTTGCTGGCATGTTGAAGATCACCACCTCTACTCTCTGAACTACATGCACTGGGGAGATCCCAAAGTCTGGTATGGTGTTCCAGGAAATGGTGCCGGAAAGTTAGAAGAGGCTATGAGAAAACATTTGCCTAACCTCTTTCAAGAACAACCTGATTTACTCCATAAACTGGTTACACAACTTTCTCCGTCCATATTGAAAATGGAGGGTGTACCTGTATATAGGTGTATTCAGAATCCTGGAGAGTTTGTTTTGACATTCCCTCGTGCATACCATTCAGGATTCAACAGTGGTTTCAATTGTGCAGAGGCAGTTAATGTAGCTCCAGTTGACTGGTTGCCCCATGGTCAAATTGCTGTAGAATTATATCGTGAACAAGGTCGAAGAACTACTATTTCCCATGATAAGCTATTGCTTGGTGCTGCTCGAGAAGCTGTGAGAGCACACTGGGAACTTAATTTACTGAAAAAGAATACTTTGGAAAATTTAAGATGGAATGATGTTTGTGGAAAAGATGGAATCTTAGCAAGAGCATTCAAGACTCGTGTTGAGATGGAGTGTGCAAGGAGGAACCTTCCTTGCAGTTCTTCCCAGGCAATGAAGATGGAGAGCAACTTCGATGCCTCTAATGAGAGAGAATGCAGTTCATGCCTCTTTGACTTGCATCTGTCTGCAGTCGGGTGTCGTTGTTCACCAGATAAATATGTATGCTTGAATCATGCCAAGCAGTTGTGCTCTTGTGCTTGGGAAGAGAGAATTTTTCTCTTTCGCTATGACATCAGTGAATTGAACATACTTCTTGAAGCATTGGAGGGAAAATTAAGTGCAGTATACAGGTGGGCTAGGCAGGATCTCGGTCTGGCACTCAGTACATCTAGGGAGTTGAGTTCTCAATCATCAACCAAGTCCCTTGGGAATCCTCAATGGAAAGAATTCTTGAGGCAATCTTCATTATTACCAACTCTAACCGCTTTTGACAGCCCTTCTCATCATGCCAAAAAGTTATCTGAAGTTACTGCTTCCTTTTCAGAAGTTAAGAAGGTAATTTCCACAGTTGACGGATCTGGGAGGGAAATTGAGCAGCAAAATCATCAAATTGAGGTGAAAAAAGAGAACCATGACCTTGTGGCAACCAATTCAAGACATGCAGATTCACAGTCCTGTAAAGAAGATACAAATGCTCTGAATTTAGTAGAAGTGAAAAATACAACGGATAAAATGTGTCCTGAAAATGTCATACTATTAAGTGATGATGAAGGTGATGAGCATAAGAAGACGATTTCAAATGGTTTAGCTGAAAGTTCATCAGTAAAGCAGCTGGGAAATTCAGACCGGTTCACTGAGATTGATTCCAAGGCCAGCCTGTGCAACTACGATGAAAATGCCATTTTGCACACTCCCGCAACTGATGCAACGGCCATGGGAGAAAAGGAGGTCAACTTGTTGACTGAAAAAAGATTGAATAGTTGCCAATCGAGCATTGTGCCTTTAAATAGTAAACAGTTTCAAAACATTAACTTATCAGTTAGAGATGCAGCTAATGCTATTCAGAACACCTCAGATGCAGGATTAAGTCATAGTAATAGAGTATTTCCAGCGTCAACAGACACTGATTCTCAAAAACCACAGACATGTGGCTCTGGAAAATTGAATGAGGGTAGGCATGGAAATGTCGGAACAAGTGCTACCTCTTGTGTGTTAGACCCTAGTAGAACTACTGCAAATTTATCTTGCAATCAAGCTAATATGGATAGATTCATGAGGCAAAAGGGTCCTCGAATGGCAAAGGTAGTTCGGAGGATCAACTGCAATGTTGAGCCTTTAGAATATGGAATCGTGCTCTCAGGAAAGTCTTGGTCAAACTGTCAGGCCATTTTCCCAAAAGGATTTAAGAGCAGGGTCAAGTTTATAAGTGTTTTAGATCCGTCAACTTTGTGTTACTATGTTTCTGAAATTCTCGATGCTGGACGGGATGGGCCTCTGTTCATGGTTGTTTTGGAGCATTGTCCAAGTGAGGTATTCGTTCATGTTTCTGCTACCAGATGTTGGGAGTTGGTTAGAGAACGAGTCAATCAGGAAATTGCAAAGCAACATAAGTTGGGTAGAACAAACCTTCCTCCTCTACAGCCTCCTGGGAGCTTAGATGGGTTAGAAATGTTCGGATTTACTTCACCGGCAATTGTGCAGGCTATTGAGGCAATGGATCGAAATCGAGTATGTGGTGAGTATTGGGACTCTCGGCCCTATTCTCGGCCTCAAGTACATAGTCCACAACTGTCTCAATCAACAGAAATTAGTCGTAACATGCAAACAACCGAAAGGAACCACGGGGTTAATTCTAGGCCAGCTGGAGTGGATATAGTACTTAGGGGATTGTTGAAGAAGGCAAACCTAGAAGAACTAAACTCACTCTATACTCTTTTAAATGATAATAGGCCAACAGTTGATCAAGGTGTGTTAGCTCGACTTCTTAACGAAGAGATTCAAAGTCATCGAAGATGA 3897 41.83 MADSSLNPWSSFPESENSDECYSFVASANPENSVNVLVLDTVFLTYDIVALISRLLLLFSTDRDMGTELMSVCVEEDSDDFPSVPPGFESYISFSLGKVHNHEKQDSCVPVSLPTVSESQPVKVGSEVEGGNVAKVTRSLRRKPCVNYRQYDYCSDDEIDSTKCLDQNFSSRPSLSKGVIRGCSECNNCQKVVARWRPEESCRPNLEDAPVFYPTEEEFGDTLTYIASIRAKAEPYGICRIVPPSSWKPPCPLKQKHIWEGSKFATRVQRIDKLQNRDSIRKNSRVCSQMRRKRRRSNRKGVDVTTLNGKIGDAGPVEAERFGFDPGPDFTLALFQKYADDFKSQYFSKPLNDTTKGCNPSMLQENKHWKPSLEAIEGEYWRMVEKPTEEIEVLYGADLETGEFGSGFPKICCQEGSTLDEEKYVKSGWNLNNFPKLPGSVLSYESSNISGVLVPWLYIGMCFSSFCWHVEDHHLYSLNYMHWGDPKVWYGVPGNGAGKLEEAMRKHLPNLFQEQPDLLHKLVTQLSPSILKMEGVPVYRCIQNPGEFVLTFPRAYHSGFNSGFNCAEAVNVAPVDWLPHGQIAVELYREQGRRTTISHDKLLLGAAREAVRAHWELNLLKKNTLENLRWNDVCGKDGILARAFKTRVEMECARRNLPCSSSQAMKMESNFDASNERECSSCLFDLHLSAVGCRCSPDKYVCLNHAKQLCSCAWEERIFLFRYDISELNILLEALEGKLSAVYRWARQDLGLALSTSRELSSQSSTKSLGNPQWKEFLRQSSLLPTLTAFDSPSHHAKKLSEVTASFSEVKKVISTVDGSGREIEQQNHQIEVKKENHDLVATNSRHADSQSCKEDTNALNLVEVKNTTDKMCPENVILLSDDEGDEHKKTISNGLAESSSVKQLGNSDRFTEIDSKASLCNYDENAILHTPATDATAMGEKEVNLLTEKRLNSCQSSIVPLNSKQFQNINLSVRDAANAIQNTSDAGLSHSNRVFPASTDTDSQKPQTCGSGKLNEGRHGNVGTSATSCVLDPSRTTANLSCNQANMDRFMRQKGPRMAKVVRRINCNVEPLEYGIVLSGKSWSNCQAIFPKGFKSRVKFISVLDPSTLCYYVSEILDAGRDGPLFMVVLEHCPSEVFVHVSATRCWELVRERVNQEIAKQHKLGRTNLPPLQPPGSLDGLEMFGFTSPAIVQAIEAMDRNRVCGEYWDSRPYSRPQVHSPQLSQSTEISRNMQTTERNHGVNSRPAGVDIVLRGLLKKANLEELNSLYTLLNDNRPTVDQGVLARLLNEEIQSHRR 1298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 21014134 21026357 + CcPI632755_11g010940.1 Cco11g1094 192330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco11g1094 1298 SMART fyrc_3 1126 1220 IPR003889 GO:0005634(InterPro)
Cco11g1094 1298 Pfam jmjN domain 210 243 IPR003349 -
Cco11g1094 1298 Pfam C5HC2 zinc finger 679 730 IPR004198 -
Cco11g1094 1298 SUPERFAMILY Clavaminate synthase-like 424 616 - -
Cco11g1094 1298 MobiDBLite consensus disorder prediction 1215 1244 - -
Cco11g1094 1298 MobiDBLite consensus disorder prediction 1216 1243 - -
Cco11g1094 1298 Pfam F/Y rich C-terminus 1124 1208 IPR003889 GO:0005634(InterPro)
Cco11g1094 1298 ProSiteProfiles JmjN domain profile. 209 250 IPR003349 -
Cco11g1094 1298 SMART fyrn_3 1076 1120 IPR003888 GO:0005634(InterPro)
Cco11g1094 1298 MobiDBLite consensus disorder prediction 988 1021 - -
Cco11g1094 1298 Gene3D - 1070 1206 - -
Cco11g1094 1298 SMART cupin_9 423 589 IPR003347 -
Cco11g1094 1298 ProSiteProfiles FYR domain FYRC motif profile. 1122 1212 IPR003889 GO:0005634(InterPro)
Cco11g1094 1298 ProSiteProfiles JmjC domain profile. 423 589 IPR003347 -
Cco11g1094 1298 Pfam JmjC domain, hydroxylase 456 572 IPR003347 -
Cco11g1094 1298 PANTHER LYSINE-SPECIFIC DEMETHYLASE 193 982 - GO:0000785(PANTHER)|GO:0005634(PANTHER)|GO:0006338(PANTHER)|GO:0010468(PANTHER)|GO:0032452(PANTHER)|GO:0034647(PANTHER)
Cco11g1094 1298 FunFam Putative lysine-specific demethylase JMJ16 1068 1206 - -
Cco11g1094 1298 Pfam F/Y-rich N-terminus 1077 1119 IPR003888 GO:0005634(InterPro)
Cco11g1094 1298 ProSiteProfiles FYR domain FYRN motif profile. 1062 1120 IPR003888 GO:0005634(InterPro)
Cco11g1094 1298 MobiDBLite consensus disorder prediction 988 1012 - -
Cco11g1094 1298 Gene3D Cupin 194 573 - -
Cco11g1094 1298 SMART JmjN_1 208 249 IPR003349 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0284 Cco-Chr1:2716877 Cco11g1094 Cco-Chr11:21014134 4.30E-93 dispersed
Cco01g0939 Cco-Chr1:10596237 Cco11g1094 Cco-Chr11:21014134 6.70E-232 dispersed
Cco09g0778 Cco-Chr9:7153991 Cco11g1094 Cco-Chr11:21014134 4.40E-175 dispersed
Cco10g0140 Cco-Chr10:1345370 Cco11g1094 Cco-Chr11:21014134 1.40E-54 dispersed
Cco11g1094 Cco-Chr11:21014134 Cco09g1175 Cco-Chr9:11515412 8.50E-56 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60272 PF02373 JmjC 1.90E-44 CL0029 Cco TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco11g1094 K11446 - csv:101208186 2304.25