Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco11g1094 | ATGGCAGATTCATCACTTAATCCTTGGTCTTCTTTTCCAGAATCGGAAAATAGTGATGAATGTTATAGTTTTGTTGCTTCGGCAAATCCAGAGAACTCTGTCAATGTGTTGGTACTGGATACTGTTTTTCTTACATATGACATAGTTGCTCTAATTTCAAGACTGCTGTTACTTTTTTCCACAGACAGGGATATGGGGACAGAGCTTATGAGCGTCTGCGTTGAAGAAGATAGTGATGACTTTCCGTCGGTTCCACCAGGTTTTGAGTCATATATATCCTTTTCTCTAGGGAAGGTGCACAATCATGAAAAACAAGACAGTTGTGTCCCTGTTAGTTTGCCAACTGTCTCTGAATCACAACCAGTCAAAGTGGGAAGTGAGGTTGAAGGTGGCAATGTTGCAAAAGTTACAAGGTCCCTCCGGCGTAAACCATGTGTAAACTATAGACAATATGATTACTGCTCTGATGACGAGATTGATAGTACTAAGTGTCTAGATCAGAATTTTTCTTCAAGGCCTTCTCTTTCAAAGGGAGTCATCCGTGGATGTTCAGAATGTAATAATTGCCAAAAGGTTGTTGCCAGATGGCGTCCAGAAGAATCCTGCCGGCCGAACCTTGAGGATGCACCTGTGTTTTACCCAACCGAAGAGGAATTTGGAGATACTTTGACATATATAGCAAGCATACGAGCAAAAGCAGAACCATATGGGATTTGTCGTATTGTCCCGCCATCTTCTTGGAAACCTCCATGTCCCCTGAAGCAGAAACATATTTGGGAGGGGTCTAAATTTGCAACTCGTGTCCAAAGAATTGATAAGCTTCAAAATCGAGATTCAATAAGAAAGAACTCTAGGGTTTGCAGTCAGATGAGAAGGAAAAGGAGGAGGAGTAATCGAAAGGGGGTTGATGTTACCACCTTAAATGGCAAAATTGGAGATGCTGGCCCTGTTGAGGCGGAAAGATTTGGATTTGATCCTGGCCCAGATTTTACTTTAGCATTGTTTCAAAAATATGCAGATGACTTTAAGTCTCAGTATTTTAGTAAACCACTCAACGATACTACAAAGGGATGTAATCCATCTATGCTGCAAGAGAACAAACATTGGAAACCATCTTTAGAGGCTATTGAGGGTGAATATTGGCGGATGGTAGAGAAACCAACTGAAGAGATTGAGGTTCTCTATGGGGCTGATTTGGAAACTGGAGAGTTTGGCAGCGGCTTTCCAAAGATTTGCTGTCAAGAGGGCTCTACGTTGGATGAAGAGAAGTATGTAAAATCTGGCTGGAACCTGAATAACTTTCCTAAGCTTCCTGGATCAGTCCTTAGCTATGAGAGTAGCAATATATCTGGAGTCTTGGTACCATGGCTTTATATCGGGATGTGCTTTTCATCTTTTTGCTGGCATGTTGAAGATCACCACCTCTACTCTCTGAACTACATGCACTGGGGAGATCCCAAAGTCTGGTATGGTGTTCCAGGAAATGGTGCCGGAAAGTTAGAAGAGGCTATGAGAAAACATTTGCCTAACCTCTTTCAAGAACAACCTGATTTACTCCATAAACTGGTTACACAACTTTCTCCGTCCATATTGAAAATGGAGGGTGTACCTGTATATAGGTGTATTCAGAATCCTGGAGAGTTTGTTTTGACATTCCCTCGTGCATACCATTCAGGATTCAACAGTGGTTTCAATTGTGCAGAGGCAGTTAATGTAGCTCCAGTTGACTGGTTGCCCCATGGTCAAATTGCTGTAGAATTATATCGTGAACAAGGTCGAAGAACTACTATTTCCCATGATAAGCTATTGCTTGGTGCTGCTCGAGAAGCTGTGAGAGCACACTGGGAACTTAATTTACTGAAAAAGAATACTTTGGAAAATTTAAGATGGAATGATGTTTGTGGAAAAGATGGAATCTTAGCAAGAGCATTCAAGACTCGTGTTGAGATGGAGTGTGCAAGGAGGAACCTTCCTTGCAGTTCTTCCCAGGCAATGAAGATGGAGAGCAACTTCGATGCCTCTAATGAGAGAGAATGCAGTTCATGCCTCTTTGACTTGCATCTGTCTGCAGTCGGGTGTCGTTGTTCACCAGATAAATATGTATGCTTGAATCATGCCAAGCAGTTGTGCTCTTGTGCTTGGGAAGAGAGAATTTTTCTCTTTCGCTATGACATCAGTGAATTGAACATACTTCTTGAAGCATTGGAGGGAAAATTAAGTGCAGTATACAGGTGGGCTAGGCAGGATCTCGGTCTGGCACTCAGTACATCTAGGGAGTTGAGTTCTCAATCATCAACCAAGTCCCTTGGGAATCCTCAATGGAAAGAATTCTTGAGGCAATCTTCATTATTACCAACTCTAACCGCTTTTGACAGCCCTTCTCATCATGCCAAAAAGTTATCTGAAGTTACTGCTTCCTTTTCAGAAGTTAAGAAGGTAATTTCCACAGTTGACGGATCTGGGAGGGAAATTGAGCAGCAAAATCATCAAATTGAGGTGAAAAAAGAGAACCATGACCTTGTGGCAACCAATTCAAGACATGCAGATTCACAGTCCTGTAAAGAAGATACAAATGCTCTGAATTTAGTAGAAGTGAAAAATACAACGGATAAAATGTGTCCTGAAAATGTCATACTATTAAGTGATGATGAAGGTGATGAGCATAAGAAGACGATTTCAAATGGTTTAGCTGAAAGTTCATCAGTAAAGCAGCTGGGAAATTCAGACCGGTTCACTGAGATTGATTCCAAGGCCAGCCTGTGCAACTACGATGAAAATGCCATTTTGCACACTCCCGCAACTGATGCAACGGCCATGGGAGAAAAGGAGGTCAACTTGTTGACTGAAAAAAGATTGAATAGTTGCCAATCGAGCATTGTGCCTTTAAATAGTAAACAGTTTCAAAACATTAACTTATCAGTTAGAGATGCAGCTAATGCTATTCAGAACACCTCAGATGCAGGATTAAGTCATAGTAATAGAGTATTTCCAGCGTCAACAGACACTGATTCTCAAAAACCACAGACATGTGGCTCTGGAAAATTGAATGAGGGTAGGCATGGAAATGTCGGAACAAGTGCTACCTCTTGTGTGTTAGACCCTAGTAGAACTACTGCAAATTTATCTTGCAATCAAGCTAATATGGATAGATTCATGAGGCAAAAGGGTCCTCGAATGGCAAAGGTAGTTCGGAGGATCAACTGCAATGTTGAGCCTTTAGAATATGGAATCGTGCTCTCAGGAAAGTCTTGGTCAAACTGTCAGGCCATTTTCCCAAAAGGATTTAAGAGCAGGGTCAAGTTTATAAGTGTTTTAGATCCGTCAACTTTGTGTTACTATGTTTCTGAAATTCTCGATGCTGGACGGGATGGGCCTCTGTTCATGGTTGTTTTGGAGCATTGTCCAAGTGAGGTATTCGTTCATGTTTCTGCTACCAGATGTTGGGAGTTGGTTAGAGAACGAGTCAATCAGGAAATTGCAAAGCAACATAAGTTGGGTAGAACAAACCTTCCTCCTCTACAGCCTCCTGGGAGCTTAGATGGGTTAGAAATGTTCGGATTTACTTCACCGGCAATTGTGCAGGCTATTGAGGCAATGGATCGAAATCGAGTATGTGGTGAGTATTGGGACTCTCGGCCCTATTCTCGGCCTCAAGTACATAGTCCACAACTGTCTCAATCAACAGAAATTAGTCGTAACATGCAAACAACCGAAAGGAACCACGGGGTTAATTCTAGGCCAGCTGGAGTGGATATAGTACTTAGGGGATTGTTGAAGAAGGCAAACCTAGAAGAACTAAACTCACTCTATACTCTTTTAAATGATAATAGGCCAACAGTTGATCAAGGTGTGTTAGCTCGACTTCTTAACGAAGAGATTCAAAGTCATCGAAGATGA | 3897 | 41.83 | MADSSLNPWSSFPESENSDECYSFVASANPENSVNVLVLDTVFLTYDIVALISRLLLLFSTDRDMGTELMSVCVEEDSDDFPSVPPGFESYISFSLGKVHNHEKQDSCVPVSLPTVSESQPVKVGSEVEGGNVAKVTRSLRRKPCVNYRQYDYCSDDEIDSTKCLDQNFSSRPSLSKGVIRGCSECNNCQKVVARWRPEESCRPNLEDAPVFYPTEEEFGDTLTYIASIRAKAEPYGICRIVPPSSWKPPCPLKQKHIWEGSKFATRVQRIDKLQNRDSIRKNSRVCSQMRRKRRRSNRKGVDVTTLNGKIGDAGPVEAERFGFDPGPDFTLALFQKYADDFKSQYFSKPLNDTTKGCNPSMLQENKHWKPSLEAIEGEYWRMVEKPTEEIEVLYGADLETGEFGSGFPKICCQEGSTLDEEKYVKSGWNLNNFPKLPGSVLSYESSNISGVLVPWLYIGMCFSSFCWHVEDHHLYSLNYMHWGDPKVWYGVPGNGAGKLEEAMRKHLPNLFQEQPDLLHKLVTQLSPSILKMEGVPVYRCIQNPGEFVLTFPRAYHSGFNSGFNCAEAVNVAPVDWLPHGQIAVELYREQGRRTTISHDKLLLGAAREAVRAHWELNLLKKNTLENLRWNDVCGKDGILARAFKTRVEMECARRNLPCSSSQAMKMESNFDASNERECSSCLFDLHLSAVGCRCSPDKYVCLNHAKQLCSCAWEERIFLFRYDISELNILLEALEGKLSAVYRWARQDLGLALSTSRELSSQSSTKSLGNPQWKEFLRQSSLLPTLTAFDSPSHHAKKLSEVTASFSEVKKVISTVDGSGREIEQQNHQIEVKKENHDLVATNSRHADSQSCKEDTNALNLVEVKNTTDKMCPENVILLSDDEGDEHKKTISNGLAESSSVKQLGNSDRFTEIDSKASLCNYDENAILHTPATDATAMGEKEVNLLTEKRLNSCQSSIVPLNSKQFQNINLSVRDAANAIQNTSDAGLSHSNRVFPASTDTDSQKPQTCGSGKLNEGRHGNVGTSATSCVLDPSRTTANLSCNQANMDRFMRQKGPRMAKVVRRINCNVEPLEYGIVLSGKSWSNCQAIFPKGFKSRVKFISVLDPSTLCYYVSEILDAGRDGPLFMVVLEHCPSEVFVHVSATRCWELVRERVNQEIAKQHKLGRTNLPPLQPPGSLDGLEMFGFTSPAIVQAIEAMDRNRVCGEYWDSRPYSRPQVHSPQLSQSTEISRNMQTTERNHGVNSRPAGVDIVLRGLLKKANLEELNSLYTLLNDNRPTVDQGVLARLLNEEIQSHRR | 1298 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 21014134 | 21026357 | + | CcPI632755_11g010940.1 | Cco11g1094 | 192330 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco11g1094 | 1298 | SMART | fyrc_3 | 1126 | 1220 | IPR003889 | GO:0005634(InterPro) | |
Cco11g1094 | 1298 | Pfam | jmjN domain | 210 | 243 | IPR003349 | - | |
Cco11g1094 | 1298 | Pfam | C5HC2 zinc finger | 679 | 730 | IPR004198 | - | |
Cco11g1094 | 1298 | SUPERFAMILY | Clavaminate synthase-like | 424 | 616 | - | - | |
Cco11g1094 | 1298 | MobiDBLite | consensus disorder prediction | 1215 | 1244 | - | - | |
Cco11g1094 | 1298 | MobiDBLite | consensus disorder prediction | 1216 | 1243 | - | - | |
Cco11g1094 | 1298 | Pfam | F/Y rich C-terminus | 1124 | 1208 | IPR003889 | GO:0005634(InterPro) | |
Cco11g1094 | 1298 | ProSiteProfiles | JmjN domain profile. | 209 | 250 | IPR003349 | - | |
Cco11g1094 | 1298 | SMART | fyrn_3 | 1076 | 1120 | IPR003888 | GO:0005634(InterPro) | |
Cco11g1094 | 1298 | MobiDBLite | consensus disorder prediction | 988 | 1021 | - | - | |
Cco11g1094 | 1298 | Gene3D | - | 1070 | 1206 | - | - | |
Cco11g1094 | 1298 | SMART | cupin_9 | 423 | 589 | IPR003347 | - | |
Cco11g1094 | 1298 | ProSiteProfiles | FYR domain FYRC motif profile. | 1122 | 1212 | IPR003889 | GO:0005634(InterPro) | |
Cco11g1094 | 1298 | ProSiteProfiles | JmjC domain profile. | 423 | 589 | IPR003347 | - | |
Cco11g1094 | 1298 | Pfam | JmjC domain, hydroxylase | 456 | 572 | IPR003347 | - | |
Cco11g1094 | 1298 | PANTHER | LYSINE-SPECIFIC DEMETHYLASE | 193 | 982 | - | GO:0000785(PANTHER)|GO:0005634(PANTHER)|GO:0006338(PANTHER)|GO:0010468(PANTHER)|GO:0032452(PANTHER)|GO:0034647(PANTHER) | |
Cco11g1094 | 1298 | FunFam | Putative lysine-specific demethylase JMJ16 | 1068 | 1206 | - | - | |
Cco11g1094 | 1298 | Pfam | F/Y-rich N-terminus | 1077 | 1119 | IPR003888 | GO:0005634(InterPro) | |
Cco11g1094 | 1298 | ProSiteProfiles | FYR domain FYRN motif profile. | 1062 | 1120 | IPR003888 | GO:0005634(InterPro) | |
Cco11g1094 | 1298 | MobiDBLite | consensus disorder prediction | 988 | 1012 | - | - | |
Cco11g1094 | 1298 | Gene3D | Cupin | 194 | 573 | - | - | |
Cco11g1094 | 1298 | SMART | JmjN_1 | 208 | 249 | IPR003349 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco01g0284 | Cco-Chr1:2716877 | Cco11g1094 | Cco-Chr11:21014134 | 4.30E-93 | dispersed | |
Cco01g0939 | Cco-Chr1:10596237 | Cco11g1094 | Cco-Chr11:21014134 | 6.70E-232 | dispersed | |
Cco09g0778 | Cco-Chr9:7153991 | Cco11g1094 | Cco-Chr11:21014134 | 4.40E-175 | dispersed | |
Cco10g0140 | Cco-Chr10:1345370 | Cco11g1094 | Cco-Chr11:21014134 | 1.40E-54 | dispersed | |
Cco11g1094 | Cco-Chr11:21014134 | Cco09g1175 | Cco-Chr9:11515412 | 8.50E-56 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
60272 | PF02373 | JmjC | 1.90E-44 | CL0029 | Cco | TR |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco11g1094 | K11446 | - | csv:101208186 | 2304.25 |